Wall clock time and date at job start Wed Apr 1 2020 04:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.51612 * 2 1 4 4 N 1.46505 * 109.46573 * 60.09940 * 3 2 1 5 5 C 1.34772 * 119.99625 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00149 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99860 * 180.02562 * 5 4 3 8 8 H 1.09002 * 110.66749 * 301.78870 * 7 5 4 9 9 C 1.54705 * 110.74855 * 65.00522 * 7 5 4 10 10 C 1.51646 * 101.93979 * 93.13198 * 9 7 5 11 11 C 1.37664 * 132.24276 * 195.74952 * 10 9 7 12 12 C 1.38352 * 120.00298 * 179.62135 * 11 10 9 13 13 C 1.38285 * 119.76593 * 359.97438 * 12 11 10 14 14 C 1.37932 * 120.35377 * 0.15663 * 13 12 11 15 15 C 1.38980 * 106.98257 * 15.71285 * 10 9 7 16 16 O 1.36137 * 111.26263 * 0.59449 * 15 10 9 17 17 C 1.53299 * 109.55151 * 239.87772 * 2 1 3 18 18 N 1.47157 * 108.38090 * 292.34998 * 17 2 1 19 19 C 1.36939 * 120.97868 * 129.45020 * 18 17 2 20 20 H 1.07998 * 119.99941 * 206.25161 * 19 18 17 21 21 C 1.38811 * 120.00390 * 26.24447 * 19 18 17 22 22 N 1.31625 * 119.99654 * 16.91120 * 21 19 18 23 23 Si 1.86798 * 120.00367 * 196.91042 * 21 19 18 24 24 H 1.48502 * 109.47060 * 94.62163 * 23 21 19 25 25 H 1.48503 * 109.47202 * 214.62057 * 23 21 19 26 26 H 1.48500 * 109.46791 * 334.62330 * 23 21 19 27 27 C 1.47146 * 118.04193 * 309.46636 * 18 17 2 28 28 C 1.53298 * 108.38388 * 50.53321 * 27 18 17 29 29 O 1.42957 * 109.51280 * 120.10555 * 2 1 3 30 30 H 1.09001 * 109.46651 * 59.99445 * 1 2 3 31 31 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46945 * 299.99817 * 1 2 3 33 33 H 1.09000 * 109.47189 * 300.10671 * 3 2 1 34 34 H 1.08992 * 109.47208 * 180.09982 * 3 2 1 35 35 H 0.96999 * 120.00089 * 0.02562 * 4 3 2 36 36 H 1.08995 * 110.94411 * 211.29932 * 9 7 5 37 37 H 1.09002 * 110.94477 * 334.96108 * 9 7 5 38 38 H 1.07994 * 119.98818 * 359.62346 * 11 10 9 39 39 H 1.08000 * 120.11418 * 180.02562 * 12 11 10 40 40 H 1.07998 * 119.82285 * 180.17329 * 13 12 11 41 41 H 1.07996 * 119.87611 * 180.02562 * 14 13 12 42 42 H 1.08995 * 109.68785 * 52.07643 * 17 2 1 43 43 H 1.08998 * 109.68028 * 172.63298 * 17 2 1 44 44 H 0.97007 * 119.99715 * 180.02562 * 22 21 19 45 45 H 1.09007 * 109.68077 * 290.81829 * 27 18 17 46 46 H 1.08993 * 109.68442 * 170.25887 * 27 18 17 47 47 H 1.08991 * 109.51669 * 187.77466 * 28 27 18 48 48 H 1.09004 * 109.55065 * 67.64798 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 7 1.5552 2.1323 1.1974 5 6 1.8826 3.4221 1.4112 6 8 2.5790 4.0115 0.6122 7 6 1.3833 4.1319 2.6432 8 1 0.2940 4.1170 2.6810 9 6 1.9847 3.5006 3.9211 10 6 3.2109 4.3630 4.1499 11 6 4.3315 4.1900 4.9305 12 6 5.3213 5.1566 4.9440 13 6 5.1802 6.2945 4.1709 14 6 4.0572 6.4717 3.3899 15 6 3.0540 5.5056 3.3744 16 8 1.8759 5.4816 2.6927 17 6 2.0430 -0.7250 -1.2495 18 7 1.6979 -2.1508 -1.1333 19 6 1.0637 -2.8079 -2.1536 20 1 0.4507 -3.6714 -1.9413 21 6 1.2085 -2.3642 -3.4609 22 7 2.1903 -1.5450 -3.7729 23 14 0.0099 -2.9297 -4.7774 24 1 -1.0747 -1.9260 -4.9235 25 1 0.7268 -3.0755 -6.0698 26 1 -0.5750 -4.2372 -4.3855 27 6 2.0541 -2.8494 0.1118 28 6 1.5405 -2.0209 1.2950 29 8 2.0075 -0.6759 1.1657 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6767 1.9568 -0.8890 34 1 3.1311 1.4413 -0.0018 35 1 0.9986 1.6608 1.8367 36 1 1.2912 3.5797 4.7583 37 1 2.2659 2.4619 3.7474 38 1 4.4379 3.2997 5.5324 39 1 6.2014 5.0225 5.5554 40 1 5.9536 7.0483 4.1785 41 1 3.9552 7.3631 2.7888 42 1 1.5716 -0.3043 -2.1376 43 1 3.1250 -0.6138 -1.3201 44 1 2.2913 -1.2346 -4.6864 45 1 3.1372 -2.9520 0.1782 46 1 1.5898 -3.8355 0.1252 47 1 1.9121 -2.4474 2.2266 48 1 0.4505 -2.0289 1.3001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108058652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:31 Heat of formation + Delta-G solvation = -72.394670 kcal Electronic energy + Delta-G solvation = -31069.913297 eV Core-core repulsion = 26897.520065 eV Total energy + Delta-G solvation = -4172.393232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.53109 -40.95127 -39.96764 -38.24032 -36.56915 -35.97249 -34.03879 -33.23012 -33.00966 -31.00997 -30.61168 -29.56302 -28.06817 -27.36551 -25.25080 -24.95077 -23.46361 -22.90149 -22.57608 -21.66373 -20.36598 -19.19650 -18.87570 -18.03609 -17.98143 -17.33834 -17.05437 -16.74643 -16.60054 -16.27370 -15.92076 -15.76099 -15.55381 -15.25292 -15.15583 -14.81324 -14.63271 -14.43263 -14.25094 -14.17554 -13.93606 -13.64439 -13.42178 -13.18260 -12.92652 -12.81876 -12.76796 -12.68901 -12.56896 -12.52142 -12.45092 -12.12759 -11.96075 -11.85566 -11.76458 -11.18046 -10.95713 -10.74702 -10.50453 -10.22335 -9.84797 -9.14277 -8.72656 -7.90323 -5.37248 0.31491 0.39148 1.40699 1.45414 1.47022 1.55955 1.80758 2.31080 2.47604 2.77096 2.79227 3.23964 3.36424 3.44520 3.49666 3.60091 3.90568 3.92011 4.01068 4.10716 4.16195 4.22705 4.31077 4.42514 4.47646 4.50797 4.55312 4.60927 4.63631 4.69577 4.72165 4.76878 4.79575 4.97415 5.04295 5.08113 5.12566 5.21256 5.27644 5.35920 5.37184 5.42683 5.53177 5.53729 5.61313 5.62260 6.15700 6.28704 6.36580 6.43982 7.06253 7.10293 7.75929 8.29486 9.15186 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002470 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.124924 B =11334.209173 C =11772.489659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.096 3.904 3 C 0.150 3.850 4 N -0.693 5.693 5 C 0.491 3.509 6 O -0.578 6.578 7 C 0.066 3.934 8 H 0.183 0.817 9 C -0.090 4.090 10 C -0.188 4.188 11 C -0.078 4.078 12 C -0.150 4.150 13 C -0.090 4.090 14 C -0.157 4.157 15 C 0.073 3.927 16 O -0.298 6.298 17 C 0.167 3.833 18 N -0.607 5.607 19 C -0.257 4.257 20 H 0.075 0.925 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.265 1.265 27 C 0.100 3.900 28 C 0.054 3.946 29 O -0.383 6.383 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.419 0.581 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.065 0.935 43 H -0.011 1.011 44 H 0.249 0.751 45 H 0.011 0.989 46 H 0.072 0.928 47 H 0.120 0.880 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 10.238 22.329 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.055 3.945 3 C 0.025 3.975 4 N -0.348 5.348 5 C 0.277 3.723 6 O -0.457 6.457 7 C 0.006 3.994 8 H 0.199 0.801 9 C -0.127 4.127 10 C -0.189 4.189 11 C -0.096 4.096 12 C -0.168 4.168 13 C -0.108 4.108 14 C -0.176 4.176 15 C 0.029 3.971 16 O -0.211 6.211 17 C 0.040 3.960 18 N -0.331 5.331 19 C -0.387 4.387 20 H 0.093 0.907 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.794 3.206 24 H -0.212 1.212 25 H -0.227 1.227 26 H -0.189 1.189 27 C -0.025 4.025 28 C -0.024 4.024 29 O -0.302 6.302 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.257 0.743 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.174 0.826 41 H 0.145 0.855 42 H 0.084 0.916 43 H 0.007 0.993 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.091 0.909 47 H 0.137 0.863 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.575 10.935 21.633 24.291 hybrid contribution -0.384 -0.697 -1.691 1.869 sum -1.959 10.238 19.941 22.502 Atomic orbital electron populations 1.22126 0.93654 1.03028 1.02316 1.22140 0.94791 0.90152 0.87393 1.21028 0.98571 0.89741 0.88145 1.45656 1.53125 1.10910 1.25060 1.21573 0.80180 0.82295 0.88263 1.90729 1.39440 1.67108 1.48472 1.23599 1.03117 0.80464 0.92176 0.80060 1.21880 0.94523 0.99972 0.96336 1.21111 0.98903 0.97376 1.01515 1.20677 0.91487 1.00046 0.97369 1.21469 1.00258 0.93920 1.01118 1.21241 0.96249 0.98661 0.94649 1.20594 0.92881 1.00346 1.03734 1.19994 0.87171 0.97112 0.92869 1.86882 1.33487 1.27629 1.73105 1.21048 0.95243 0.84490 0.95203 1.44256 1.68628 1.05485 1.14712 1.19526 1.21104 1.11989 0.86034 0.90727 1.25799 0.98797 1.00819 0.99232 1.70194 1.31075 1.38611 1.18455 0.85266 0.78486 0.78445 0.78366 1.21189 1.22665 1.18915 1.21841 0.96986 0.96451 0.87218 1.23117 0.99238 0.81634 0.98390 1.87816 1.73340 1.26470 1.42623 0.92800 0.91848 0.89853 0.91131 0.93139 0.74263 0.84387 0.87497 0.83335 0.82634 0.82642 0.85503 0.91630 0.99260 0.94145 0.97130 0.90942 0.86256 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 7.92 71.98 0.57 -4.11 16 2 C 0.10 3.40 0.76 -10.69 -0.01 3.39 16 3 C 0.15 5.11 4.82 86.38 0.42 5.53 16 4 N -0.69 -17.86 4.99 -463.06 -2.31 -20.17 16 5 C 0.49 14.17 7.08 87.66 0.62 14.79 16 6 O -0.58 -23.26 16.55 15.11 0.25 -23.01 16 7 C 0.07 1.34 4.10 30.43 0.12 1.46 16 8 H 0.18 2.10 8.14 -2.39 -0.02 2.08 16 9 C -0.09 -1.39 6.63 30.73 0.20 -1.19 16 10 C -0.19 -4.04 6.26 -19.52 -0.12 -4.17 16 11 C -0.08 -1.40 10.03 22.16 0.22 -1.18 16 12 C -0.15 -2.46 10.07 22.31 0.22 -2.24 16 13 C -0.09 -1.64 10.02 22.21 0.22 -1.42 16 14 C -0.16 -3.74 10.06 22.45 0.23 -3.51 16 15 C 0.07 1.93 6.93 22.70 0.16 2.09 16 16 O -0.30 -8.20 10.42 -76.97 -0.80 -9.01 16 17 C 0.17 7.92 4.12 86.35 0.36 8.28 16 18 N -0.61 -29.17 2.57 -697.54 -1.79 -30.96 16 19 C -0.26 -13.48 9.65 84.03 0.81 -12.67 16 20 H 0.08 3.76 7.88 -2.91 -0.02 3.74 16 21 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 22 N -0.94 -55.19 11.14 21.65 0.24 -54.95 16 23 Si 0.97 43.90 29.59 68.60 2.03 45.93 16 24 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 27 C 0.10 3.89 6.73 86.36 0.58 4.47 16 28 C 0.05 1.58 6.60 72.08 0.48 2.05 16 29 O -0.38 -12.50 9.97 -148.98 -1.49 -13.98 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.10 6.12 -2.39 -0.01 2.09 16 32 H 0.08 1.85 6.87 -2.39 -0.02 1.83 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.42 7.90 7.20 -92.71 -0.67 7.24 16 36 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.53 7.78 -2.39 -0.02 1.51 16 38 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.07 3.51 6.14 -2.39 -0.01 3.49 16 43 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 44 H 0.25 14.36 8.31 -92.70 -0.77 13.58 16 45 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 47 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 48 H 0.06 1.74 6.26 -2.38 -0.01 1.72 16 Total: -1.00 -77.00 385.13 1.94 -75.06 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.31 Total: 21.88 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.50 Total: 9.21 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -3.86 Total: -106.08 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -2.04 Total: -46.00 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -77.00 1.94 -75.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108058652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.663 kcal (2) G-P(sol) polarization free energy of solvation -77.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds