Wall clock time and date at job start Wed Apr 1 2020 03:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40366 * 126.64772 * 2 1 4 4 C 1.35137 * 107.11369 * 180.30065 * 3 2 1 5 5 O 1.33929 * 108.76919 * 359.74644 * 4 3 2 6 6 C 1.34915 * 109.38317 * 359.97438 * 5 4 3 7 7 C 1.46660 * 125.98770 * 180.02562 * 6 5 4 8 8 O 1.21690 * 120.00257 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99625 * 0.02562 * 7 6 5 10 10 C 1.47653 * 125.81599 * 359.97438 * 9 7 6 11 11 C 1.54974 * 104.85159 * 204.02785 * 10 9 7 12 12 C 1.55325 * 101.67323 * 323.39706 * 11 10 9 13 13 C 1.46237 * 125.81209 * 180.02562 * 9 7 6 14 14 C 1.54057 * 111.01795 * 57.67504 * 13 9 7 15 15 C 1.54635 * 101.52043 * 263.77939 * 14 13 9 16 16 N 1.46848 * 105.50131 * 335.01219 * 15 14 13 17 17 C 1.46501 * 124.36662 * 196.87470 * 16 15 14 18 18 C 1.53002 * 109.47342 * 270.02690 * 17 16 15 19 19 C 1.50699 * 109.47202 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00215 * 359.97438 * 19 18 17 21 21 C 1.37868 * 119.99992 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00027 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00273 * 0.02562 * 21 19 18 24 24 H 1.48490 * 109.47388 * 89.99801 * 23 21 19 25 25 H 1.48497 * 109.47214 * 210.00486 * 23 21 19 26 26 H 1.48504 * 109.46854 * 329.99844 * 23 21 19 27 27 C 1.34657 * 111.26501 * 16.87675 * 16 15 14 28 28 O 1.21283 * 125.07141 * 179.14133 * 27 16 15 29 29 H 1.08997 * 109.46667 * 270.12714 * 1 2 3 30 30 H 1.08994 * 109.47074 * 30.12911 * 1 2 3 31 31 H 1.09001 * 109.47020 * 150.13225 * 1 2 3 32 32 H 1.07998 * 126.44148 * 0.04715 * 3 2 1 33 33 H 1.07994 * 125.61404 * 179.78471 * 4 3 2 34 34 H 1.09002 * 110.35884 * 322.86754 * 10 9 7 35 35 H 1.08994 * 110.36062 * 85.07057 * 10 9 7 36 36 H 1.08998 * 110.99329 * 81.49722 * 11 10 9 37 37 H 1.09006 * 110.98198 * 205.26505 * 11 10 9 38 38 H 1.09001 * 110.76438 * 276.58915 * 12 11 10 39 39 H 1.08990 * 110.76254 * 153.20057 * 12 11 10 40 40 H 1.09002 * 111.21466 * 145.64646 * 14 13 9 41 41 H 1.09003 * 110.86293 * 21.75731 * 14 13 9 42 42 H 1.09006 * 110.24301 * 216.00482 * 15 14 13 43 43 H 1.08995 * 110.24145 * 94.02005 * 15 14 13 44 44 H 1.09004 * 109.47090 * 30.02769 * 17 16 15 45 45 H 1.09005 * 109.47024 * 150.02634 * 17 16 15 46 46 H 1.08999 * 109.46653 * 299.99914 * 18 17 16 47 47 H 1.09001 * 109.46670 * 60.00154 * 18 17 16 48 48 H 0.96999 * 119.99752 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6743 -0.0068 5 8 3.6006 -0.6648 -0.0053 6 6 2.3220 -1.0956 0.0030 7 6 1.8843 -2.4953 0.0077 8 8 0.6968 -2.7614 0.0147 9 7 2.7972 -3.4869 0.0042 10 6 4.2632 -3.3115 -0.0048 11 6 4.8165 -4.6240 -0.6155 12 6 3.8386 -5.6795 -0.0305 13 6 2.5043 -4.9196 0.0075 14 6 1.6339 -5.3085 -1.2026 15 6 0.2170 -5.2869 -0.5836 16 7 0.4124 -5.5244 0.8523 17 6 -0.6492 -5.9352 1.7745 18 6 -1.3206 -4.6937 2.3651 19 6 -2.4130 -5.1163 3.3132 20 1 -2.6092 -6.1655 3.4778 21 6 -3.1620 -4.1636 3.9705 22 7 -4.1151 -4.5325 4.7984 23 14 -2.8233 -2.3488 3.6854 24 1 -3.6528 -1.8622 2.5540 25 1 -3.1614 -1.5834 4.9122 26 1 -1.3862 -2.1582 3.3634 27 6 1.6931 -5.3158 1.2120 28 8 2.1271 -5.4256 2.3392 29 1 -0.3632 0.0023 1.0277 30 1 -0.3633 0.8888 -0.5158 31 1 -0.3633 -0.8912 -0.5118 32 1 2.0307 2.1595 0.0007 33 1 4.5046 1.2915 -0.0119 34 1 4.5394 -2.4587 -0.6250 35 1 4.6353 -3.1774 1.0108 36 1 4.7615 -4.6018 -1.7039 37 1 5.8375 -4.8097 -0.2820 38 1 4.1442 -5.9749 0.9733 39 1 3.7700 -6.5477 -0.6858 40 1 1.8863 -6.3046 -1.5662 41 1 1.7237 -4.5695 -1.9989 42 1 -0.3958 -6.0775 -1.0167 43 1 -0.2502 -4.3155 -0.7450 44 1 -1.3894 -6.5271 1.2360 45 1 -0.2206 -6.5337 2.5785 46 1 -0.5804 -4.1019 2.9036 47 1 -1.7492 -4.0954 1.5611 48 1 -4.6423 -3.8622 5.2606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269640333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:23 Heat of formation + Delta-G solvation = -35.636696 kcal Electronic energy + Delta-G solvation = -32606.602892 eV Core-core repulsion = 28435.803606 eV Total energy + Delta-G solvation = -4170.799287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.88946 -41.30515 -38.67568 -37.35686 -35.94144 -34.26061 -33.60229 -32.24832 -31.72682 -30.42215 -29.43437 -27.92454 -27.68319 -25.29665 -24.38545 -23.29835 -22.23582 -21.80417 -21.38465 -20.21882 -19.67169 -18.73896 -17.63622 -16.90555 -16.69477 -16.49574 -16.27595 -15.69074 -15.52523 -15.21376 -14.50637 -14.34396 -14.09772 -13.99309 -13.56988 -13.41900 -13.28687 -13.15227 -13.08584 -12.99753 -12.78200 -12.63304 -12.59910 -12.39991 -12.19127 -11.86717 -11.68725 -11.52894 -11.45353 -11.14075 -10.91378 -10.79673 -10.36940 -10.02653 -9.90892 -9.86119 -9.80985 -9.61333 -9.16494 -8.85238 -8.52223 -8.45815 -7.97198 -5.98098 -3.95822 0.92486 2.16517 2.25860 2.73053 3.07508 3.28959 3.38886 3.44771 3.55899 3.57251 4.09629 4.27678 4.41365 4.46130 4.54756 4.62150 4.70508 4.74499 4.79972 4.97321 5.13155 5.25423 5.33038 5.36039 5.37457 5.43231 5.52170 5.56486 5.61195 5.62515 5.73512 5.75868 5.81092 5.91366 5.93887 6.04337 6.05396 6.15323 6.27174 6.37663 6.43713 6.70547 6.73445 6.96237 7.25866 7.35747 7.51902 7.75476 7.86234 8.00745 8.55926 8.64406 9.05262 9.65349 11.15005 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.005084 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.859057 B = 5506.053227 C = 7652.352235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.081 4.081 3 C -0.223 4.223 4 C -0.011 4.011 5 O -0.162 6.162 6 C -0.078 4.078 7 C 0.612 3.388 8 O -0.487 6.487 9 N -0.591 5.591 10 C 0.100 3.900 11 C -0.128 4.128 12 C -0.114 4.114 13 C 0.133 3.867 14 C -0.134 4.134 15 C 0.098 3.902 16 N -0.594 5.594 17 C 0.138 3.862 18 C -0.019 4.019 19 C -0.518 4.518 20 H 0.073 0.927 21 C 0.071 3.929 22 N -0.904 5.904 23 Si 0.877 3.123 24 H -0.276 1.276 25 H -0.289 1.289 26 H -0.264 1.264 27 C 0.512 3.488 28 O -0.528 6.528 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.209 0.791 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.017 0.983 47 H 0.017 0.983 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.698 6.864 -18.384 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.242 4.242 4 C -0.081 4.081 5 O -0.058 6.058 6 C -0.130 4.130 7 C 0.401 3.599 8 O -0.363 6.363 9 N -0.326 5.326 10 C -0.022 4.022 11 C -0.166 4.166 12 C -0.152 4.152 13 C 0.044 3.956 14 C -0.173 4.173 15 C -0.025 4.025 16 N -0.326 5.326 17 C 0.018 3.982 18 C -0.057 4.057 19 C -0.557 4.557 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.543 5.543 23 Si 0.704 3.296 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.188 1.188 27 C 0.296 3.704 28 O -0.404 6.404 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.173 0.827 33 H 0.225 0.775 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.221 6.541 -17.600 27.594 hybrid contribution -0.004 1.445 0.064 1.446 sum 20.217 7.985 -17.536 27.929 Atomic orbital electron populations 1.20474 0.88004 1.03627 1.03439 1.20678 0.97790 0.90900 0.99046 1.21749 0.92449 1.00145 1.09860 1.24342 0.99866 0.80929 1.02928 1.84137 1.28311 1.22384 1.70972 1.21675 0.81457 0.94280 1.15585 1.16235 0.85084 0.81294 0.77306 1.90902 1.14846 1.81260 1.49256 1.48023 1.07192 1.04141 1.73282 1.22542 0.78877 0.98911 1.01882 1.22807 0.99377 0.93591 1.00816 1.22579 0.91483 0.97618 1.03552 1.21160 0.96899 0.81719 0.95778 1.22973 0.94996 1.02733 0.96604 1.22296 0.96452 1.03279 0.80520 1.48451 1.08979 1.65624 1.09518 1.21581 0.87021 0.98630 0.90950 1.19821 0.95924 0.93858 0.96128 1.21011 1.15213 0.95266 1.24200 0.90898 1.24937 0.94628 0.98911 0.94578 1.69916 1.21645 1.33922 1.28809 0.86796 0.79629 0.85688 0.77471 1.20191 1.21518 1.18819 1.20425 0.83307 0.77564 0.89123 1.90686 1.74963 1.52710 1.22082 0.90509 0.91425 0.89270 0.82719 0.77456 0.89471 0.90796 0.90270 0.89309 0.89068 0.89152 0.89226 0.89388 0.91089 0.88612 0.91075 0.90788 0.96416 0.96482 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.81 36.01 0.35 -1.03 16 2 C -0.08 -1.11 6.20 -104.43 -0.65 -1.76 16 3 C -0.22 -2.29 10.83 -39.88 -0.43 -2.72 16 4 C -0.01 -0.10 12.08 29.63 0.36 0.26 16 5 O -0.16 -1.85 7.88 5.00 0.04 -1.81 16 6 C -0.08 -1.12 6.93 -36.79 -0.26 -1.38 16 7 C 0.61 9.93 7.43 -12.86 -0.10 9.83 16 8 O -0.49 -9.19 10.73 5.20 0.06 -9.14 16 9 N -0.59 -8.28 2.86 -158.82 -0.45 -8.74 16 10 C 0.10 1.03 6.19 -2.37 -0.01 1.01 16 11 C -0.13 -0.96 7.09 -24.46 -0.17 -1.14 16 12 C -0.11 -1.17 6.06 -25.18 -0.15 -1.32 16 13 C 0.13 1.85 0.85 -132.34 -0.11 1.74 16 14 C -0.13 -1.56 6.01 -25.32 -0.15 -1.71 16 15 C 0.10 1.48 6.38 -2.99 -0.02 1.46 16 16 N -0.59 -11.46 2.73 -172.50 -0.47 -11.93 16 17 C 0.14 3.07 5.88 -4.04 -0.02 3.05 16 18 C -0.02 -0.51 4.36 -27.88 -0.12 -0.63 16 19 C -0.52 -15.68 9.66 -34.44 -0.33 -16.01 16 20 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 21 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 22 N -0.90 -29.02 13.96 55.43 0.77 -28.25 16 23 Si 0.88 23.58 27.47 -169.99 -4.67 18.91 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 26 H -0.26 -7.20 6.54 56.52 0.37 -6.83 16 27 C 0.51 9.92 6.47 -11.13 -0.07 9.85 16 28 O -0.53 -12.28 17.07 5.55 0.09 -12.18 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.37 6.45 -51.93 -0.34 1.04 16 32 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.21 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.09 0.78 6.25 -51.93 -0.32 0.45 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.09 7.51 -51.93 -0.39 0.70 16 39 H 0.09 0.71 7.40 -51.93 -0.38 0.33 16 40 H 0.09 0.80 7.46 -51.93 -0.39 0.41 16 41 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 1.63 5.76 -51.93 -0.30 1.33 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.07 1.73 7.94 -51.93 -0.41 1.31 16 46 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 47 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 48 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -38.58 382.17 -7.97 -46.55 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.11 Total: -0.77 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.99 Total: 1.60 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.15 Total: -48.91 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.19 Total: -23.13 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.67 Total: 18.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.58 -7.97 -46.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269640333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.915 kcal (2) G-P(sol) polarization free energy of solvation -38.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds