Wall clock time and date at job start Wed Apr 1 2020 03:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40366 * 126.64772 * 2 1 4 4 C 1.35137 * 107.11369 * 180.30065 * 3 2 1 5 5 O 1.33929 * 108.76919 * 359.74644 * 4 3 2 6 6 C 1.34915 * 109.38317 * 359.97438 * 5 4 3 7 7 C 1.46660 * 125.98770 * 180.02562 * 6 5 4 8 8 O 1.21690 * 120.00257 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99625 * 0.02562 * 7 6 5 10 10 C 1.47653 * 125.81599 * 359.97438 * 9 7 6 11 11 C 1.54974 * 104.85159 * 204.02785 * 10 9 7 12 12 C 1.55325 * 101.67323 * 323.39706 * 11 10 9 13 13 C 1.46237 * 125.81209 * 180.02562 * 9 7 6 14 14 C 1.54057 * 111.01795 * 57.67504 * 13 9 7 15 15 C 1.54635 * 101.52043 * 263.77939 * 14 13 9 16 16 N 1.46848 * 105.50131 * 335.01219 * 15 14 13 17 17 C 1.46501 * 124.36662 * 196.87470 * 16 15 14 18 18 C 1.53002 * 109.47342 * 270.02690 * 17 16 15 19 19 C 1.50699 * 109.47202 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00215 * 359.97438 * 19 18 17 21 21 C 1.37868 * 119.99992 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00027 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00273 * 0.02562 * 21 19 18 24 24 H 1.48490 * 109.47388 * 89.99801 * 23 21 19 25 25 H 1.48497 * 109.47214 * 210.00486 * 23 21 19 26 26 H 1.48504 * 109.46854 * 329.99844 * 23 21 19 27 27 C 1.34657 * 111.26501 * 16.87675 * 16 15 14 28 28 O 1.21283 * 125.07141 * 179.14133 * 27 16 15 29 29 H 1.08997 * 109.46667 * 270.12714 * 1 2 3 30 30 H 1.08994 * 109.47074 * 30.12911 * 1 2 3 31 31 H 1.09001 * 109.47020 * 150.13225 * 1 2 3 32 32 H 1.07998 * 126.44148 * 0.04715 * 3 2 1 33 33 H 1.07994 * 125.61404 * 179.78471 * 4 3 2 34 34 H 1.09002 * 110.35884 * 322.86754 * 10 9 7 35 35 H 1.08994 * 110.36062 * 85.07057 * 10 9 7 36 36 H 1.08998 * 110.99329 * 81.49722 * 11 10 9 37 37 H 1.09006 * 110.98198 * 205.26505 * 11 10 9 38 38 H 1.09001 * 110.76438 * 276.58915 * 12 11 10 39 39 H 1.08990 * 110.76254 * 153.20057 * 12 11 10 40 40 H 1.09002 * 111.21466 * 145.64646 * 14 13 9 41 41 H 1.09003 * 110.86293 * 21.75731 * 14 13 9 42 42 H 1.09006 * 110.24301 * 216.00482 * 15 14 13 43 43 H 1.08995 * 110.24145 * 94.02005 * 15 14 13 44 44 H 1.09004 * 109.47090 * 30.02769 * 17 16 15 45 45 H 1.09005 * 109.47024 * 150.02634 * 17 16 15 46 46 H 1.08999 * 109.46653 * 299.99914 * 18 17 16 47 47 H 1.09001 * 109.46670 * 60.00154 * 18 17 16 48 48 H 0.96999 * 119.99752 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6743 -0.0068 5 8 3.6006 -0.6648 -0.0053 6 6 2.3220 -1.0956 0.0030 7 6 1.8843 -2.4953 0.0077 8 8 0.6968 -2.7614 0.0147 9 7 2.7972 -3.4869 0.0042 10 6 4.2632 -3.3115 -0.0048 11 6 4.8165 -4.6240 -0.6155 12 6 3.8386 -5.6795 -0.0305 13 6 2.5043 -4.9196 0.0075 14 6 1.6339 -5.3085 -1.2026 15 6 0.2170 -5.2869 -0.5836 16 7 0.4124 -5.5244 0.8523 17 6 -0.6492 -5.9352 1.7745 18 6 -1.3206 -4.6937 2.3651 19 6 -2.4130 -5.1163 3.3132 20 1 -2.6092 -6.1655 3.4778 21 6 -3.1620 -4.1636 3.9705 22 7 -4.1151 -4.5325 4.7984 23 14 -2.8233 -2.3488 3.6854 24 1 -3.6528 -1.8622 2.5540 25 1 -3.1614 -1.5834 4.9122 26 1 -1.3862 -2.1582 3.3634 27 6 1.6931 -5.3158 1.2120 28 8 2.1271 -5.4256 2.3392 29 1 -0.3632 0.0023 1.0277 30 1 -0.3633 0.8888 -0.5158 31 1 -0.3633 -0.8912 -0.5118 32 1 2.0307 2.1595 0.0007 33 1 4.5046 1.2915 -0.0119 34 1 4.5394 -2.4587 -0.6250 35 1 4.6353 -3.1774 1.0108 36 1 4.7615 -4.6018 -1.7039 37 1 5.8375 -4.8097 -0.2820 38 1 4.1442 -5.9749 0.9733 39 1 3.7700 -6.5477 -0.6858 40 1 1.8863 -6.3046 -1.5662 41 1 1.7237 -4.5695 -1.9989 42 1 -0.3958 -6.0775 -1.0167 43 1 -0.2502 -4.3155 -0.7450 44 1 -1.3894 -6.5271 1.2360 45 1 -0.2206 -6.5337 2.5785 46 1 -0.5804 -4.1019 2.9036 47 1 -1.7492 -4.0954 1.5611 48 1 -4.6423 -3.8622 5.2606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269640333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:22 Heat of formation + Delta-G solvation = -62.417997 kcal Electronic energy + Delta-G solvation = -32607.764217 eV Core-core repulsion = 28435.803606 eV Total energy + Delta-G solvation = -4171.960611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.75639 -42.47121 -39.98406 -38.46190 -37.50163 -35.63205 -35.16921 -33.88255 -32.95509 -31.36303 -31.02558 -29.06679 -28.70883 -27.13549 -25.50774 -24.35546 -23.32068 -23.02580 -22.60744 -21.49512 -20.86360 -19.97662 -19.14468 -18.70551 -17.70217 -17.51790 -17.30321 -17.13568 -16.65770 -16.57645 -16.15278 -15.76036 -15.52398 -15.03500 -14.94847 -14.84666 -14.56195 -14.46031 -14.27497 -14.19634 -13.97334 -13.93529 -13.75224 -13.59713 -13.49942 -13.13088 -13.00100 -12.85110 -12.73044 -12.44668 -12.29813 -12.05350 -11.99343 -11.84622 -11.62611 -11.56335 -11.18750 -11.06553 -10.88218 -10.73084 -9.94166 -9.57165 -9.54191 -8.42076 -6.45301 -0.03808 1.10156 1.19325 1.21570 1.36479 1.37541 1.72414 1.95375 2.09003 2.16768 2.23998 2.92393 3.15794 3.28257 3.55238 3.59589 3.73507 3.76213 3.87784 4.02916 4.11423 4.20425 4.21478 4.40661 4.46334 4.48688 4.55255 4.60038 4.62745 4.64058 4.72037 4.74162 4.75971 4.87608 4.91493 5.03153 5.04800 5.08089 5.13239 5.15399 5.20622 5.23590 5.29914 5.41418 5.42184 5.67668 5.84258 6.12951 6.20887 6.25395 6.59577 6.89037 7.10546 7.20241 8.74150 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.005084 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.859057 B = 5506.053227 C = 7652.352235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.098 4.098 3 C -0.237 4.237 4 C 0.018 3.982 5 O -0.161 6.161 6 C -0.111 4.111 7 C 0.598 3.402 8 O -0.530 6.530 9 N -0.594 5.594 10 C 0.092 3.908 11 C -0.109 4.109 12 C -0.112 4.112 13 C 0.133 3.867 14 C -0.116 4.116 15 C 0.089 3.911 16 N -0.600 5.600 17 C 0.147 3.853 18 C -0.001 4.001 19 C -0.531 4.531 20 H 0.047 0.953 21 C 0.020 3.980 22 N -0.938 5.938 23 Si 0.940 3.060 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.280 1.280 27 C 0.495 3.505 28 O -0.582 6.582 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.181 0.819 33 H 0.262 0.738 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.054 0.946 46 H -0.017 1.017 47 H 0.015 0.985 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.704 8.517 -21.549 33.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.255 4.255 4 C -0.051 4.051 5 O -0.057 6.057 6 C -0.162 4.162 7 C 0.389 3.611 8 O -0.409 6.409 9 N -0.327 5.327 10 C -0.029 4.029 11 C -0.147 4.147 12 C -0.150 4.150 13 C 0.044 3.956 14 C -0.154 4.154 15 C -0.033 4.033 16 N -0.331 5.331 17 C 0.025 3.975 18 C -0.039 4.039 19 C -0.570 4.570 20 H 0.066 0.934 21 C -0.178 4.178 22 N -0.578 5.578 23 Si 0.765 3.235 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.205 1.205 27 C 0.282 3.718 28 O -0.462 6.462 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.198 0.802 33 H 0.278 0.722 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.002 0.998 47 H 0.033 0.967 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.252 8.186 -20.808 32.259 hybrid contribution -0.935 0.974 1.132 1.762 sum 22.316 9.160 -19.676 31.130 Atomic orbital electron populations 1.20399 0.89097 1.03931 1.01933 1.20940 0.97642 0.92417 0.99100 1.22070 0.92495 1.00425 1.10551 1.25407 1.01151 0.79882 0.98690 1.84131 1.26764 1.23918 1.70891 1.21410 0.82773 0.93631 1.18398 1.16656 0.85030 0.82524 0.76922 1.90873 1.16492 1.82182 1.51320 1.48236 1.08563 1.03787 1.72164 1.22807 0.76743 1.01483 1.01833 1.22850 0.99581 0.90198 1.02061 1.22661 0.89836 0.99112 1.03395 1.21320 0.98366 0.82391 0.93544 1.23031 0.91395 1.05389 0.95564 1.22544 0.99519 1.03008 0.78228 1.48545 1.08407 1.65193 1.10948 1.21189 0.88241 0.96419 0.91634 1.19572 0.94133 0.95258 0.94968 1.21280 1.16253 0.94298 1.25156 0.93438 1.25738 0.94384 1.03383 0.94296 1.70015 1.22514 1.35690 1.29627 0.85809 0.78631 0.80524 0.78537 1.18082 1.19831 1.20523 1.21583 0.83834 0.76215 0.90197 1.90632 1.76054 1.54713 1.24816 0.92901 0.88642 0.91431 0.80194 0.72233 0.87755 0.92263 0.87555 0.86784 0.91435 0.85820 0.85309 0.87744 0.88600 0.90781 0.88975 0.92739 0.99850 0.96653 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.80 9.81 71.24 0.70 -2.10 16 2 C -0.10 -2.64 6.20 -19.74 -0.12 -2.76 16 3 C -0.24 -4.23 10.83 22.07 0.24 -3.99 16 4 C 0.02 0.24 12.08 67.11 0.81 1.05 16 5 O -0.16 -3.33 7.88 -5.03 -0.04 -3.36 16 6 C -0.11 -3.15 6.93 24.08 0.17 -2.98 16 7 C 0.60 19.86 7.43 86.44 0.64 20.50 16 8 O -0.53 -21.04 10.73 -4.32 -0.05 -21.09 16 9 N -0.59 -16.29 2.86 -774.60 -2.21 -18.50 16 10 C 0.09 1.71 6.19 86.83 0.54 2.24 16 11 C -0.11 -1.21 7.09 32.07 0.23 -0.98 16 12 C -0.11 -2.00 6.06 31.60 0.19 -1.81 16 13 C 0.13 3.55 0.85 3.41 0.00 3.55 16 14 C -0.12 -2.38 6.01 31.51 0.19 -2.19 16 15 C 0.09 2.64 6.38 86.87 0.55 3.19 16 16 N -0.60 -23.88 2.73 -818.11 -2.23 -26.11 16 17 C 0.15 6.87 5.88 86.38 0.51 7.38 16 18 C 0.00 -0.05 4.36 29.85 0.13 0.08 16 19 C -0.53 -33.68 9.66 25.60 0.25 -33.44 16 20 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 21 C 0.02 1.29 5.47 84.65 0.46 1.75 16 22 N -0.94 -61.72 13.96 21.45 0.30 -61.42 16 23 Si 0.94 50.43 27.47 68.60 1.88 52.32 16 24 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.27 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.28 -15.66 6.54 99.48 0.65 -15.01 16 27 C 0.50 19.85 6.47 87.62 0.57 20.41 16 28 O -0.58 -28.74 17.07 -3.04 -0.05 -28.79 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 2.22 6.45 -2.39 -0.02 2.21 16 32 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.26 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.10 1.56 6.25 -2.39 -0.01 1.55 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.07 1.56 7.51 -2.39 -0.02 1.54 16 39 H 0.12 1.38 7.40 -2.39 -0.02 1.36 16 40 H 0.13 1.66 7.46 -2.39 -0.02 1.65 16 41 H 0.10 1.88 8.07 -2.39 -0.02 1.86 16 42 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.07 2.59 5.76 -2.39 -0.01 2.57 16 44 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 45 H 0.05 2.72 7.94 -2.38 -0.02 2.70 16 46 H -0.02 -1.06 7.20 -2.39 -0.02 -1.08 16 47 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 48 H 0.27 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -92.76 382.17 4.57 -88.20 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.92 Total: 8.85 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 6.05 Total: 9.91 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -4.15 Total: -106.03 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.14 Total: -53.25 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 1.88 Total: 52.32 kcal Total: -92.76 4.57 -88.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269640333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.779 kcal (2) G-P(sol) polarization free energy of solvation -92.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds