Wall clock time and date at job start Wed Apr 1 2020 03:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 110.91710 * 2 1 4 4 N 1.46494 * 109.47183 * 297.55705 * 3 2 1 5 5 C 1.36944 * 119.99867 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99977 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00007 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99789 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99923 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46757 * 90.00345 * 9 7 5 11 11 H 1.48500 * 109.46777 * 210.00017 * 9 7 5 12 12 H 1.48496 * 109.47221 * 330.00374 * 9 7 5 13 13 C 1.55153 * 111.00595 * 123.90667 * 2 1 3 14 14 C 1.54329 * 102.94153 * 82.56935 * 13 2 1 15 15 N 1.47016 * 107.26886 * 22.19601 * 14 13 2 16 16 C 1.34780 * 125.64506 * 181.08086 * 15 14 13 17 17 O 1.21589 * 120.00010 * 174.69009 * 16 15 14 18 18 C 1.47548 * 120.00009 * 354.69352 * 16 15 14 19 19 C 1.39762 * 120.14027 * 315.42635 * 18 16 15 20 20 C 1.37745 * 119.95410 * 180.02562 * 19 18 16 21 21 C 1.38491 * 120.32689 * 0.04072 * 20 19 18 22 22 C 1.38593 * 120.41354 * 0.02562 * 21 20 19 23 23 C 1.39000 * 119.89895 * 359.63249 * 22 21 20 24 24 O 1.35822 * 120.86144 * 180.02562 * 23 22 21 25 25 C 1.43184 * 116.79105 * 343.16965 * 24 23 22 26 26 C 1.53460 * 108.23196 * 46.00206 * 25 24 23 27 27 O 1.36135 * 119.37007 * 179.78095 * 22 21 20 28 28 C 1.47421 * 108.70894 * 1.05697 * 15 14 13 29 29 H 1.09003 * 109.47454 * 182.44409 * 1 2 3 30 30 H 1.09001 * 109.47236 * 302.44925 * 1 2 3 31 31 H 1.09002 * 109.47456 * 62.44468 * 1 2 3 32 32 H 1.09003 * 109.46825 * 57.55602 * 3 2 1 33 33 H 1.09001 * 109.47310 * 177.55386 * 3 2 1 34 34 H 0.97001 * 120.00557 * 359.97438 * 4 3 2 35 35 H 0.97005 * 119.99934 * 179.97438 * 8 7 5 36 36 H 1.09001 * 110.71980 * 324.20540 * 13 2 1 37 37 H 1.09004 * 110.87269 * 201.00364 * 13 2 1 38 38 H 1.08992 * 109.88152 * 262.77589 * 14 13 2 39 39 H 1.09005 * 110.00636 * 141.68530 * 14 13 2 40 40 H 1.08004 * 120.02727 * 359.97438 * 19 18 16 41 41 H 1.07998 * 119.83699 * 180.02562 * 20 19 18 42 42 H 1.07996 * 119.79226 * 180.02562 * 21 20 19 43 43 H 1.09009 * 109.70780 * 286.32013 * 25 24 23 44 44 H 1.09001 * 109.71144 * 165.69432 * 25 24 23 45 45 H 1.09003 * 109.71095 * 180.62823 * 26 25 24 46 46 H 1.09000 * 109.74012 * 60.03411 * 26 25 24 47 47 H 1.08998 * 110.37102 * 94.71183 * 28 15 14 48 48 H 1.09000 * 110.37087 * 217.04012 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 7 1.6537 2.1135 -1.2245 5 6 2.0258 3.4126 -1.4460 6 1 2.6311 3.9326 -0.7182 7 6 1.6259 4.0609 -2.6065 8 7 0.8886 3.4270 -3.4937 9 14 2.1341 5.8328 -2.9091 10 1 3.4285 5.8591 -3.6365 11 1 1.0951 6.5136 -3.7227 12 1 2.2828 6.5341 -1.6086 13 6 2.0861 -0.8080 1.2021 14 6 2.0284 -2.2647 0.6958 15 7 2.0138 -2.2158 -0.7735 16 6 1.9458 -3.2827 -1.5943 17 8 1.8430 -3.1205 -2.7949 18 6 1.9962 -4.6475 -1.0358 19 6 2.9325 -4.9677 -0.0488 20 6 2.9765 -6.2432 0.4695 21 6 2.0971 -7.2127 0.0169 22 6 1.1638 -6.9112 -0.9624 23 6 1.1030 -5.6265 -1.4896 24 8 0.1958 -5.3095 -2.4494 25 6 -0.4177 -6.4014 -3.1434 26 6 -0.8508 -7.4466 -2.1065 27 8 0.3127 -7.8817 -1.3949 28 6 2.0852 -0.8066 -1.2004 29 1 -0.3634 -1.0267 0.0438 30 1 -0.3634 0.5514 0.8672 31 1 -0.3634 0.4754 -0.9111 32 1 1.6909 1.9654 0.8673 33 1 3.1650 1.4021 0.0439 34 1 1.1103 1.6464 -1.8783 35 1 0.6089 3.8801 -4.3045 36 1 1.4524 -0.6793 2.0796 37 1 3.1130 -0.5171 1.4238 38 1 1.1218 -2.7480 1.0597 39 1 2.9048 -2.8141 1.0398 40 1 3.6216 -4.2160 0.3068 41 1 3.7004 -6.4885 1.2324 42 1 2.1390 -8.2098 0.4295 43 1 0.2975 -6.8451 -3.8361 44 1 -1.2893 -6.0448 -3.6923 45 1 -1.3121 -8.2957 -2.6110 46 1 -1.5622 -7.0020 -1.4106 47 1 3.1181 -0.5232 -1.4026 48 1 1.4670 -0.6459 -2.0837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270737801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:07 Heat of formation + Delta-G solvation = -82.003446 kcal Electronic energy + Delta-G solvation = -30980.466211 eV Core-core repulsion = 26807.656311 eV Total energy + Delta-G solvation = -4172.809900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.44168 -41.28655 -39.38470 -38.54244 -38.11211 -36.48059 -34.40594 -32.49796 -32.21503 -31.76196 -30.37367 -29.50434 -28.05876 -27.37252 -25.75725 -25.48608 -24.32578 -23.23678 -21.98684 -21.01512 -20.21862 -19.65027 -19.12808 -18.55788 -18.26015 -17.67179 -17.04326 -16.59352 -16.48023 -16.31582 -16.09165 -15.72739 -15.56134 -15.48898 -15.33965 -15.24943 -14.85399 -14.72818 -14.39102 -14.16542 -13.90185 -13.57339 -13.47401 -13.13808 -13.03114 -13.02660 -12.81485 -12.69024 -12.67485 -12.24976 -12.16147 -12.07654 -12.03057 -11.78543 -11.66864 -11.50943 -11.40319 -10.98118 -10.91862 -9.83566 -9.60289 -9.18043 -8.97501 -7.93165 -5.22038 -0.18258 0.23557 1.46378 1.48925 1.57195 1.60072 1.85381 2.02460 2.22920 2.56698 2.64712 3.13392 3.32883 3.40928 3.55749 3.60203 3.75279 3.85968 3.87179 3.91568 4.09584 4.15134 4.21585 4.27211 4.32685 4.36115 4.39202 4.48419 4.51554 4.62139 4.66597 4.73982 4.79545 4.88341 4.96322 5.01535 5.06219 5.07639 5.10654 5.15358 5.29735 5.31629 5.33417 5.45891 5.51532 5.60299 5.83694 6.28094 6.29451 6.46896 7.04637 7.34265 8.11895 8.33184 9.30688 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.002498 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.780806 B =11205.952793 C =12049.118665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C 0.168 3.832 4 N -0.746 5.746 5 C -0.239 4.239 6 H 0.081 0.919 7 C -0.081 4.081 8 N -0.974 5.974 9 Si 0.975 3.025 10 H -0.289 1.289 11 H -0.299 1.299 12 H -0.265 1.265 13 C -0.108 4.108 14 C 0.097 3.903 15 N -0.608 5.608 16 C 0.570 3.430 17 O -0.582 6.582 18 C -0.146 4.146 19 C -0.081 4.081 20 C -0.104 4.104 21 C -0.088 4.088 22 C 0.031 3.969 23 C 0.074 3.926 24 O -0.326 6.326 25 C 0.009 3.991 26 C 0.023 3.977 27 O -0.313 6.313 28 C 0.127 3.873 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.028 0.972 34 H 0.371 0.629 35 H 0.249 0.751 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.158 0.842 41 H 0.182 0.818 42 H 0.166 0.834 43 H 0.077 0.923 44 H 0.141 0.859 45 H 0.160 0.840 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -27.720 14.815 31.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C 0.042 3.958 4 N -0.388 5.388 5 C -0.371 4.371 6 H 0.099 0.901 7 C -0.273 4.273 8 N -0.625 5.625 9 Si 0.804 3.196 10 H -0.217 1.217 11 H -0.225 1.225 12 H -0.189 1.189 13 C -0.146 4.146 14 C -0.024 4.024 15 N -0.341 5.341 16 C 0.360 3.640 17 O -0.462 6.462 18 C -0.150 4.150 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.014 4.014 23 C 0.027 3.973 24 O -0.241 6.241 25 C -0.066 4.066 26 C -0.052 4.052 27 O -0.228 6.228 28 C 0.004 3.996 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.204 0.796 35 H 0.058 0.942 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.176 0.824 41 H 0.199 0.801 42 H 0.184 0.816 43 H 0.095 0.905 44 H 0.159 0.841 45 H 0.177 0.823 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.824 -27.555 14.166 30.994 hybrid contribution -0.516 1.247 -1.786 2.238 sum 0.308 -26.308 12.380 29.077 Atomic orbital electron populations 1.21571 0.93692 1.00954 1.01564 1.21840 0.96080 0.94269 0.95115 1.20790 0.96458 0.89701 0.88873 1.42644 1.63041 1.11720 1.21438 1.19681 1.25202 0.89824 1.02419 0.90119 1.25617 1.01594 1.02670 0.97431 1.69856 1.43051 1.38199 1.11385 0.85113 0.76685 0.79948 0.77866 1.21677 1.22536 1.18915 1.22756 1.03599 0.91483 0.96751 1.22489 1.03743 0.98828 0.77378 1.48465 1.71811 1.05160 1.08641 1.18237 0.75816 0.84742 0.85222 1.90783 1.51470 1.86794 1.17164 1.19222 1.00323 0.91939 1.03490 1.21460 0.96288 0.99000 0.93194 1.21290 0.99364 0.90724 1.00823 1.21053 0.93800 1.02385 0.93432 1.19030 0.96605 0.86825 0.98981 1.19108 0.92683 0.93589 0.91917 1.86382 1.53630 1.35500 1.48544 1.23999 1.00182 0.87783 0.94630 1.23887 0.85753 1.01063 0.94490 1.86289 1.33964 1.31175 1.71406 1.22066 0.99946 0.80028 0.97548 0.92519 0.90827 0.95473 0.94620 0.95425 0.79646 0.94248 0.87040 0.88510 0.90351 0.87806 0.82417 0.80065 0.81618 0.90492 0.84112 0.82273 0.90022 0.92221 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 8.42 71.98 0.61 -3.33 16 2 C -0.07 -2.27 0.62 -50.79 -0.03 -2.30 16 3 C 0.17 6.49 5.23 86.38 0.45 6.94 16 4 N -0.75 -38.63 5.17 -343.44 -1.78 -40.40 16 5 C -0.24 -13.58 9.99 84.03 0.84 -12.74 16 6 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 7 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 8 N -0.97 -62.58 13.06 21.65 0.28 -62.29 16 9 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 13 C -0.11 -2.14 5.92 31.78 0.19 -1.95 16 14 C 0.10 1.91 5.53 86.73 0.48 2.39 16 15 N -0.61 -18.91 3.31 -815.53 -2.70 -21.61 16 16 C 0.57 20.50 7.15 86.70 0.62 21.12 16 17 O -0.58 -27.31 16.53 9.51 0.16 -27.16 16 18 C -0.15 -4.02 5.40 -20.01 -0.11 -4.13 16 19 C -0.08 -1.41 8.42 22.52 0.19 -1.23 16 20 C -0.10 -1.22 10.02 22.21 0.22 -0.99 16 21 C -0.09 -1.27 9.95 22.41 0.22 -1.05 16 22 C 0.03 0.65 6.49 22.54 0.15 0.80 16 23 C 0.07 2.04 6.48 22.90 0.15 2.19 16 24 O -0.33 -10.03 9.26 -68.33 -0.63 -10.67 16 25 C 0.01 0.17 7.26 72.14 0.52 0.69 16 26 C 0.02 0.31 7.26 72.14 0.52 0.84 16 27 O -0.31 -5.91 10.42 -82.83 -0.86 -6.78 16 28 C 0.13 4.74 5.35 86.86 0.46 5.21 16 29 H 0.06 1.69 7.81 -2.39 -0.02 1.67 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.03 1.09 7.20 -2.39 -0.02 1.07 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.03 1.05 8.11 -2.39 -0.02 1.03 16 34 H 0.37 21.16 6.31 -92.71 -0.58 20.58 16 35 H 0.25 15.56 8.31 -92.70 -0.77 14.79 16 36 H 0.11 1.66 8.05 -2.39 -0.02 1.64 16 37 H 0.10 1.66 8.02 -2.38 -0.02 1.64 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 1.37 5.71 -2.38 -0.01 1.35 16 40 H 0.16 2.06 6.14 -2.91 -0.02 2.04 16 41 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 42 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 48 H 0.03 1.64 7.72 -2.39 -0.02 1.63 16 Total: -1.00 -86.42 385.97 2.84 -83.58 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.40 Total: 27.72 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.95 Total: 8.10 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -4.20 Total: -124.30 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.34 Total: -44.60 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -86.42 2.84 -83.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270737801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.573 kcal (2) G-P(sol) polarization free energy of solvation -86.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds