Wall clock time and date at job start Wed Apr 1 2020 05:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46779 * 2 1 4 4 C 1.46246 * 126.96246 * 90.00149 * 3 2 1 5 5 C 1.39704 * 134.18676 * 0.03566 * 4 3 2 6 6 C 1.36624 * 119.70944 * 179.97438 * 5 4 3 7 7 C 1.38839 * 120.44265 * 0.02562 * 6 5 4 8 8 C 1.37788 * 120.74737 * 359.97438 * 7 6 5 9 9 C 1.39036 * 119.85568 * 359.97438 * 8 7 6 10 10 O 1.34709 * 133.24574 * 180.02562 * 9 8 7 11 11 C 1.34949 * 110.86086 * 179.97438 * 10 9 8 12 12 C 1.46976 * 125.13068 * 179.97438 * 11 10 9 13 13 O 1.21652 * 120.00754 * 172.70940 * 12 11 10 14 14 N 1.34782 * 119.99902 * 352.70415 * 12 11 10 15 15 C 1.46501 * 119.99863 * 3.32718 * 14 12 11 16 16 C 1.46502 * 120.00030 * 183.32162 * 14 12 11 17 17 C 1.53002 * 109.46973 * 90.00405 * 16 14 12 18 18 H 1.09009 * 109.46651 * 304.99944 * 17 16 14 19 19 O 1.42895 * 109.47394 * 64.99615 * 17 16 14 20 20 C 1.53003 * 109.47247 * 185.00066 * 17 16 14 21 21 N 1.46492 * 109.47121 * 179.97438 * 20 17 16 22 22 C 1.36939 * 120.00087 * 179.97438 * 21 20 17 23 23 H 1.08002 * 119.99944 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00078 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00645 * 0.02562 * 24 22 21 26 26 Si 1.86810 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46799 * 59.99953 * 26 24 22 28 28 H 1.48497 * 109.46886 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47052 * 300.00213 * 26 24 22 30 30 H 1.09006 * 109.47199 * 60.00295 * 1 2 3 31 31 H 1.09002 * 109.46982 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47822 * 299.99915 * 1 2 3 33 33 H 1.08996 * 109.47355 * 240.00286 * 2 1 3 34 34 H 1.09000 * 109.46794 * 119.99616 * 2 1 3 35 35 H 1.08003 * 120.14636 * 359.96279 * 5 4 3 36 36 H 1.08002 * 119.77758 * 180.02562 * 6 5 4 37 37 H 1.08006 * 119.62206 * 179.72128 * 7 6 5 38 38 H 1.07994 * 120.07824 * 179.97438 * 8 7 6 39 39 H 1.08995 * 109.47210 * 83.90623 * 15 14 12 40 40 H 1.09004 * 109.46900 * 203.90767 * 15 14 12 41 41 H 1.09000 * 109.46868 * 323.89912 * 15 14 12 42 42 H 1.08997 * 109.47344 * 210.00058 * 16 14 12 43 43 H 1.09003 * 109.47233 * 330.00268 * 16 14 12 44 44 H 0.96702 * 113.99584 * 60.00434 * 19 17 16 45 45 H 1.08999 * 109.46731 * 300.00148 * 20 17 16 46 46 H 1.09000 * 109.46556 * 59.99425 * 20 17 16 47 47 H 0.97000 * 120.00513 * 0.02562 * 21 20 17 48 48 H 0.96997 * 120.00402 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3253 2.2499 1.1686 5 6 2.2543 2.0470 2.5489 6 6 2.6107 3.0542 3.4006 7 6 3.0419 4.2766 2.9031 8 6 3.1190 4.4968 1.5451 9 6 2.7627 3.4866 0.6588 10 8 2.7343 3.4059 -0.6856 11 6 2.3060 2.1902 -1.0851 12 6 2.1553 1.7640 -2.4837 13 8 1.8890 0.6054 -2.7413 14 7 2.3122 2.6571 -3.4809 15 6 2.7043 4.0352 -3.1751 16 6 2.0906 2.2498 -4.8706 17 6 0.6239 2.4783 -5.2414 18 1 -0.0162 1.9582 -4.5286 19 8 0.3363 3.8776 -5.2071 20 6 0.3636 1.9384 -6.6492 21 7 -1.0408 2.1567 -7.0039 22 6 -1.5091 1.7528 -8.2257 23 1 -0.8430 1.2738 -8.9280 24 6 -2.8398 1.9601 -8.5620 25 7 -3.6514 2.5452 -7.7069 26 14 -3.4785 1.4099 -10.2291 27 1 -3.2974 -0.0574 -10.3687 28 1 -4.9209 1.7441 -10.3414 29 1 -2.7244 2.1060 -11.3024 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9190 1.0983 2.9412 36 1 2.5566 2.8984 4.4679 37 1 3.3161 5.0651 3.5883 38 1 3.4555 5.4519 1.1699 39 1 3.7880 4.0904 -3.0730 40 1 2.3814 4.6924 -3.9825 41 1 2.2350 4.3479 -2.2424 42 1 2.7279 2.8406 -5.5284 43 1 2.3334 1.1930 -4.9826 44 1 0.8703 4.4039 -5.8178 45 1 1.0039 2.4584 -7.3618 46 1 0.5831 0.8710 -6.6752 47 1 -1.6389 2.5879 -6.3737 48 1 -4.5813 2.6897 -7.9418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278839910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:23 Heat of formation + Delta-G solvation = -39.438536 kcal Electronic energy + Delta-G solvation = -30398.922884 eV Core-core repulsion = 26227.958738 eV Total energy + Delta-G solvation = -4170.964147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.84204 -39.93131 -38.16466 -37.55717 -35.62011 -34.74136 -33.98734 -31.45876 -31.40662 -30.69996 -30.03576 -29.09833 -26.84419 -25.95672 -24.14955 -23.68067 -22.99484 -22.54703 -21.22181 -20.42327 -19.82686 -18.14963 -17.28504 -17.13983 -16.80676 -16.69397 -16.28353 -15.83740 -15.51418 -14.93428 -14.80389 -14.56865 -14.42459 -14.29353 -13.98214 -13.76766 -13.67816 -13.27190 -13.09482 -12.93786 -12.70461 -12.56198 -12.45131 -12.38669 -12.29449 -12.02908 -11.57512 -11.48246 -11.30661 -11.12300 -10.92054 -10.78863 -10.68351 -10.23845 -10.19885 -10.14023 -9.81301 -9.66939 -8.98769 -8.86829 -8.70184 -8.36354 -6.89610 -5.71991 -3.01674 0.29683 1.00655 1.57213 2.20702 2.81102 3.00986 3.35145 3.46167 3.50053 3.51663 4.02433 4.21725 4.49463 4.56994 4.58249 4.65103 4.74704 4.87591 4.96876 5.00686 5.07006 5.09866 5.17902 5.20166 5.29884 5.39429 5.40677 5.55775 5.57804 5.64133 5.66275 5.75169 5.83078 5.87758 5.90921 5.99311 6.02647 6.06761 6.13898 6.20526 6.23988 6.25409 6.39638 6.55180 6.73609 6.75859 7.14705 7.70608 7.87895 8.02646 8.46095 9.57362 10.15330 10.51105 11.50315 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.002235 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.778642 B =12527.326213 C =13001.324892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.076 4.076 4 C -0.137 4.137 5 C -0.059 4.059 6 C -0.141 4.141 7 C -0.086 4.086 8 C -0.111 4.111 9 C 0.064 3.936 10 O -0.176 6.176 11 C -0.027 4.027 12 C 0.595 3.405 13 O -0.509 6.509 14 N -0.594 5.594 15 C 0.077 3.923 16 C 0.086 3.914 17 C 0.086 3.914 18 H 0.100 0.900 19 O -0.550 6.550 20 C 0.127 3.873 21 N -0.725 5.725 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.367 0.633 45 H 0.020 0.980 46 H 0.028 0.972 47 H 0.389 0.611 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.319 3.176 23.227 29.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.080 4.080 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.159 4.159 7 C -0.104 4.104 8 C -0.129 4.129 9 C 0.016 3.984 10 O -0.078 6.078 11 C -0.076 4.076 12 C 0.382 3.618 13 O -0.387 6.387 14 N -0.325 5.325 15 C -0.065 4.065 16 C -0.037 4.037 17 C 0.026 3.974 18 H 0.118 0.882 19 O -0.354 6.354 20 C -0.002 4.002 21 N -0.370 5.370 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.213 0.787 45 H 0.038 0.962 46 H 0.046 0.954 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.803 2.531 23.154 29.316 hybrid contribution -0.175 0.158 -1.064 1.090 sum 17.628 2.688 22.089 28.389 Atomic orbital electron populations 1.21663 0.93953 1.02192 1.02101 1.20240 0.96551 0.89491 1.04037 1.21412 0.99787 0.97313 0.89440 1.19812 1.05669 0.94064 0.94293 1.20368 0.97419 0.99553 0.90324 1.20790 1.01651 0.93440 1.00044 1.21001 0.98048 0.97551 0.93786 1.19992 1.04118 0.97640 0.91191 1.19866 1.00601 0.96137 0.81820 1.84315 1.71146 1.32109 1.20229 1.21737 1.07033 0.84168 0.94707 1.16772 0.77935 0.85313 0.81771 1.90860 1.48787 1.17043 1.81989 1.47618 1.67078 1.11267 1.06568 1.22044 0.99832 0.81588 1.03066 1.22353 0.98028 1.03026 0.80291 1.22561 0.93739 0.82597 0.98550 0.88179 1.86634 1.66049 1.17692 1.64998 1.21208 0.89114 0.97860 0.91996 1.42229 1.04505 1.72324 1.17938 1.19173 0.93498 1.32138 0.92612 0.91304 1.24764 0.96361 1.01487 0.98311 1.69671 1.05000 1.47945 1.35215 0.86257 0.77785 0.78304 0.83755 1.21244 1.21671 1.21292 0.92167 0.91836 0.93015 0.88234 0.90946 0.85329 0.85192 0.84649 0.84782 0.92632 0.89856 0.89914 0.89646 0.88378 0.78667 0.96231 0.95434 0.77655 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.24 16 2 C -0.07 -0.75 5.95 -27.88 -0.17 -0.92 16 3 C -0.08 -0.96 5.64 -102.28 -0.58 -1.54 16 4 C -0.14 -1.54 6.37 -105.19 -0.67 -2.21 16 5 C -0.06 -0.51 10.06 -39.62 -0.40 -0.91 16 6 C -0.14 -0.98 9.98 -39.94 -0.40 -1.38 16 7 C -0.09 -0.57 10.01 -39.52 -0.40 -0.97 16 8 C -0.11 -0.93 10.07 -39.45 -0.40 -1.32 16 9 C 0.06 0.71 7.41 -38.34 -0.28 0.43 16 10 O -0.18 -2.14 7.13 2.79 0.02 -2.12 16 11 C -0.03 -0.37 6.73 -36.91 -0.25 -0.61 16 12 C 0.59 8.76 7.64 -12.72 -0.10 8.66 16 13 O -0.51 -8.57 14.16 5.23 0.07 -8.49 16 14 N -0.59 -7.73 2.84 -183.01 -0.52 -8.25 16 15 C 0.08 0.80 9.35 59.85 0.56 1.36 16 16 C 0.09 1.13 5.06 -4.04 -0.02 1.11 16 17 C 0.09 1.45 3.30 -26.73 -0.09 1.36 16 18 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 19 O -0.55 -9.21 12.03 -35.23 -0.42 -9.63 16 20 C 0.13 2.56 5.92 -4.04 -0.02 2.53 16 21 N -0.73 -19.05 5.49 -59.91 -0.33 -19.37 16 22 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 26 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.28 6.25 -51.93 -0.32 0.96 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.14 0.52 8.06 -52.48 -0.42 0.09 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.77 7.24 -51.93 -0.38 0.39 16 41 H 0.08 0.91 5.40 -51.93 -0.28 0.63 16 42 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.10 1.35 7.38 -51.93 -0.38 0.97 16 44 H 0.37 4.82 9.04 45.56 0.41 5.23 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.39 11.05 7.54 -40.82 -0.31 10.74 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -35.02 398.89 -8.85 -43.87 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.30 Total: 11.79 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.08 Total: -3.28 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.12 Total: -55.97 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.33 Total: -20.24 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.02 -8.85 -43.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278839910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.432 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds