Wall clock time and date at job start Wed Apr 1 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46779 * 2 1 4 4 C 1.46246 * 126.96246 * 90.00149 * 3 2 1 5 5 C 1.39704 * 134.18676 * 0.03566 * 4 3 2 6 6 C 1.36624 * 119.70944 * 179.97438 * 5 4 3 7 7 C 1.38839 * 120.44265 * 0.02562 * 6 5 4 8 8 C 1.37788 * 120.74737 * 359.97438 * 7 6 5 9 9 C 1.39036 * 119.85568 * 359.97438 * 8 7 6 10 10 O 1.34709 * 133.24574 * 180.02562 * 9 8 7 11 11 C 1.34949 * 110.86086 * 179.97438 * 10 9 8 12 12 C 1.46976 * 125.13068 * 179.97438 * 11 10 9 13 13 O 1.21652 * 120.00754 * 172.70940 * 12 11 10 14 14 N 1.34782 * 119.99902 * 352.70415 * 12 11 10 15 15 C 1.46501 * 119.99863 * 3.32718 * 14 12 11 16 16 C 1.46502 * 120.00030 * 183.32162 * 14 12 11 17 17 C 1.53002 * 109.46973 * 90.00405 * 16 14 12 18 18 H 1.09009 * 109.46651 * 304.99944 * 17 16 14 19 19 O 1.42895 * 109.47394 * 64.99615 * 17 16 14 20 20 C 1.53003 * 109.47247 * 185.00066 * 17 16 14 21 21 N 1.46492 * 109.47121 * 179.97438 * 20 17 16 22 22 C 1.36939 * 120.00087 * 179.97438 * 21 20 17 23 23 H 1.08002 * 119.99944 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00078 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00645 * 0.02562 * 24 22 21 26 26 Si 1.86810 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46799 * 59.99953 * 26 24 22 28 28 H 1.48497 * 109.46886 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47052 * 300.00213 * 26 24 22 30 30 H 1.09006 * 109.47199 * 60.00295 * 1 2 3 31 31 H 1.09002 * 109.46982 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47822 * 299.99915 * 1 2 3 33 33 H 1.08996 * 109.47355 * 240.00286 * 2 1 3 34 34 H 1.09000 * 109.46794 * 119.99616 * 2 1 3 35 35 H 1.08003 * 120.14636 * 359.96279 * 5 4 3 36 36 H 1.08002 * 119.77758 * 180.02562 * 6 5 4 37 37 H 1.08006 * 119.62206 * 179.72128 * 7 6 5 38 38 H 1.07994 * 120.07824 * 179.97438 * 8 7 6 39 39 H 1.08995 * 109.47210 * 83.90623 * 15 14 12 40 40 H 1.09004 * 109.46900 * 203.90767 * 15 14 12 41 41 H 1.09000 * 109.46868 * 323.89912 * 15 14 12 42 42 H 1.08997 * 109.47344 * 210.00058 * 16 14 12 43 43 H 1.09003 * 109.47233 * 330.00268 * 16 14 12 44 44 H 0.96702 * 113.99584 * 60.00434 * 19 17 16 45 45 H 1.08999 * 109.46731 * 300.00148 * 20 17 16 46 46 H 1.09000 * 109.46556 * 59.99425 * 20 17 16 47 47 H 0.97000 * 120.00513 * 0.02562 * 21 20 17 48 48 H 0.96997 * 120.00402 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3253 2.2499 1.1686 5 6 2.2543 2.0470 2.5489 6 6 2.6107 3.0542 3.4006 7 6 3.0419 4.2766 2.9031 8 6 3.1190 4.4968 1.5451 9 6 2.7627 3.4866 0.6588 10 8 2.7343 3.4059 -0.6856 11 6 2.3060 2.1902 -1.0851 12 6 2.1553 1.7640 -2.4837 13 8 1.8890 0.6054 -2.7413 14 7 2.3122 2.6571 -3.4809 15 6 2.7043 4.0352 -3.1751 16 6 2.0906 2.2498 -4.8706 17 6 0.6239 2.4783 -5.2414 18 1 -0.0162 1.9582 -4.5286 19 8 0.3363 3.8776 -5.2071 20 6 0.3636 1.9384 -6.6492 21 7 -1.0408 2.1567 -7.0039 22 6 -1.5091 1.7528 -8.2257 23 1 -0.8430 1.2738 -8.9280 24 6 -2.8398 1.9601 -8.5620 25 7 -3.6514 2.5452 -7.7069 26 14 -3.4785 1.4099 -10.2291 27 1 -3.2974 -0.0574 -10.3687 28 1 -4.9209 1.7441 -10.3414 29 1 -2.7244 2.1060 -11.3024 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9190 1.0983 2.9412 36 1 2.5566 2.8984 4.4679 37 1 3.3161 5.0651 3.5883 38 1 3.4555 5.4519 1.1699 39 1 3.7880 4.0904 -3.0730 40 1 2.3814 4.6924 -3.9825 41 1 2.2350 4.3479 -2.2424 42 1 2.7279 2.8406 -5.5284 43 1 2.3334 1.1930 -4.9826 44 1 0.8703 4.4039 -5.8178 45 1 1.0039 2.4584 -7.3618 46 1 0.5831 0.8710 -6.6752 47 1 -1.6389 2.5879 -6.3737 48 1 -4.5813 2.6897 -7.9418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278839910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:22 Heat of formation + Delta-G solvation = -63.501662 kcal Electronic energy + Delta-G solvation = -30399.966340 eV Core-core repulsion = 26227.958738 eV Total energy + Delta-G solvation = -4172.007602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.65418 -41.01372 -38.97571 -38.77186 -36.75051 -35.93768 -35.64083 -33.27278 -32.16811 -31.66410 -31.10308 -30.18858 -28.00003 -27.27794 -25.49648 -24.62158 -24.07798 -23.61015 -22.73877 -21.30332 -20.72841 -19.25639 -19.05815 -18.07972 -17.91099 -17.68918 -17.18527 -16.91861 -16.72544 -16.43775 -16.18066 -15.66102 -15.41482 -15.28761 -15.04718 -14.97938 -14.77487 -14.60962 -14.34133 -14.05528 -13.85601 -13.72377 -13.55284 -13.27595 -13.14042 -13.00272 -12.90945 -12.73666 -12.63723 -12.38578 -12.25069 -12.18896 -12.07493 -11.87775 -11.83218 -11.34960 -11.09248 -10.98583 -10.96599 -9.79676 -9.65717 -9.18714 -9.03424 -7.95575 -5.26177 -0.50675 0.34957 0.75469 1.32789 1.45585 1.49868 1.55978 1.82461 1.99786 2.54705 2.71714 3.17248 3.34771 3.44188 3.47373 3.63804 3.71480 3.83310 3.97020 4.09223 4.12802 4.22555 4.28453 4.32476 4.34616 4.38517 4.42267 4.46443 4.51584 4.58626 4.60863 4.70386 4.82771 4.89873 4.93112 4.95965 5.04886 5.15369 5.20616 5.23534 5.30092 5.36244 5.39652 5.45746 5.48591 5.57840 5.99229 6.14923 6.24593 6.80173 6.86803 7.30959 8.06713 8.29764 9.27793 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.002235 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.778642 B =12527.326213 C =13001.324892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.080 4.080 4 C -0.161 4.161 5 C -0.068 4.068 6 C -0.136 4.136 7 C -0.074 4.074 8 C -0.122 4.122 9 C 0.041 3.959 10 O -0.179 6.179 11 C -0.055 4.055 12 C 0.587 3.413 13 O -0.544 6.544 14 N -0.594 5.594 15 C 0.076 3.924 16 C 0.096 3.904 17 C 0.103 3.897 18 H 0.063 0.937 19 O -0.562 6.562 20 C 0.125 3.875 21 N -0.742 5.742 22 C -0.249 4.249 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.979 3.021 27 H -0.278 1.278 28 H -0.296 1.296 29 H -0.273 1.273 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.172 0.828 38 H 0.153 0.847 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.385 0.615 45 H 0.044 0.956 46 H 0.026 0.974 47 H 0.373 0.627 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.190 4.164 24.659 32.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 C -0.083 4.083 4 C -0.162 4.162 5 C -0.086 4.086 6 C -0.153 4.153 7 C -0.091 4.091 8 C -0.140 4.140 9 C -0.007 4.007 10 O -0.082 6.082 11 C -0.105 4.105 12 C 0.375 3.625 13 O -0.424 6.424 14 N -0.323 5.323 15 C -0.065 4.065 16 C -0.027 4.027 17 C 0.043 3.957 18 H 0.081 0.919 19 O -0.369 6.369 20 C -0.002 4.002 21 N -0.385 5.385 22 C -0.380 4.380 23 H 0.097 0.903 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.807 3.193 27 H -0.204 1.204 28 H -0.222 1.222 29 H -0.199 1.199 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.189 0.811 38 H 0.171 0.829 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.142 0.858 43 H 0.109 0.891 44 H 0.234 0.766 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.205 0.795 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 19.745 3.538 24.575 31.723 hybrid contribution -0.675 -0.085 -1.319 1.484 sum 19.070 3.453 23.256 30.273 Atomic orbital electron populations 1.21613 0.94096 1.02663 1.01003 1.20229 0.96342 0.89330 1.04216 1.21703 0.98831 0.97607 0.90164 1.20004 1.07096 0.93992 0.95101 1.20690 0.97549 1.01031 0.89373 1.21247 0.99805 0.92806 1.01475 1.21520 0.95787 0.98319 0.93511 1.20402 1.04157 0.97824 0.91618 1.20407 1.01500 0.97215 0.81557 1.84262 1.71473 1.31373 1.21104 1.21535 1.09342 0.85283 0.94293 1.17066 0.77501 0.85194 0.82698 1.90824 1.50437 1.18387 1.82724 1.47706 1.66409 1.12105 1.06120 1.22188 1.00975 0.80152 1.03170 1.22212 0.95746 1.03505 0.81194 1.22207 0.95544 0.82340 0.95630 0.91890 1.86602 1.67037 1.17585 1.65694 1.21412 0.86313 0.98132 0.94385 1.42454 1.06759 1.72195 1.17062 1.19647 0.93886 1.31041 0.93465 0.90285 1.25677 0.96798 1.02370 1.02294 1.69854 1.04999 1.49947 1.37389 0.85136 0.76671 0.78121 0.79359 1.20374 1.22204 1.19918 0.95368 0.90584 0.91838 0.90250 0.88421 0.83756 0.81971 0.81055 0.82934 0.90702 0.88448 0.90772 0.85827 0.89100 0.76610 0.93861 0.95571 0.79473 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.89 71.98 0.71 -2.55 16 2 C -0.06 -1.53 5.95 29.85 0.18 -1.35 16 3 C -0.08 -2.09 5.64 -18.35 -0.10 -2.19 16 4 C -0.16 -3.56 6.37 -20.23 -0.13 -3.69 16 5 C -0.07 -1.06 10.06 22.25 0.22 -0.83 16 6 C -0.14 -1.41 9.98 22.04 0.22 -1.19 16 7 C -0.07 -0.72 10.01 22.31 0.22 -0.50 16 8 C -0.12 -1.78 10.07 22.35 0.23 -1.56 16 9 C 0.04 0.90 7.41 23.07 0.17 1.07 16 10 O -0.18 -4.47 7.13 -12.95 -0.09 -4.57 16 11 C -0.06 -1.57 6.73 24.00 0.16 -1.41 16 12 C 0.59 18.31 7.64 86.53 0.66 18.97 16 13 O -0.54 -19.70 14.16 -4.19 -0.06 -19.76 16 14 N -0.59 -15.64 2.84 -851.16 -2.41 -18.05 16 15 C 0.08 1.53 9.35 127.77 1.20 2.72 16 16 C 0.10 2.49 5.06 86.38 0.44 2.93 16 17 C 0.10 3.55 3.30 30.60 0.10 3.65 16 18 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 19 O -0.56 -18.79 12.03 -148.98 -1.79 -20.58 16 20 C 0.12 5.03 5.92 86.38 0.51 5.54 16 21 N -0.74 -39.67 5.49 -343.47 -1.89 -41.56 16 22 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 23 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 25 N -0.97 -62.18 13.06 21.65 0.28 -61.90 16 26 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 29 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 30 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 2.22 6.25 -2.39 -0.01 2.20 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.64 7.24 -2.38 -0.02 1.62 16 41 H 0.07 1.65 5.40 -2.39 -0.01 1.64 16 42 H 0.12 2.26 8.07 -2.39 -0.02 2.24 16 43 H 0.09 2.53 7.38 -2.39 -0.02 2.51 16 44 H 0.38 9.56 9.04 -74.06 -0.67 8.89 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.37 21.98 7.54 -92.71 -0.70 21.28 16 48 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -79.32 398.89 1.79 -77.53 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: -0.37 Total: 37.75 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 6.09 Total: 1.83 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -4.02 Total: -121.51 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.94 Total: -44.91 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -79.32 1.79 -77.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278839910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.029 kcal (2) G-P(sol) polarization free energy of solvation -79.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds