Wall clock time and date at job start Wed Apr 1 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.44969 * 2 1 4 4 C 1.53035 * 109.46207 * 240.02956 * 2 1 3 5 5 C 1.53184 * 109.31340 * 178.61652 * 4 2 1 6 6 N 1.46929 * 108.77936 * 54.63497 * 5 4 2 7 7 C 1.34770 * 120.63300 * 126.36279 * 6 5 4 8 8 O 1.21357 * 120.00354 * 1.63838 * 7 6 5 9 9 C 1.49447 * 120.00272 * 181.62905 * 7 6 5 10 10 O 1.21356 * 119.99835 * 352.99375 * 9 7 6 11 11 N 1.34773 * 120.00300 * 172.98951 * 9 7 6 12 12 C 1.46504 * 120.00157 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47321 * 179.97438 * 12 11 9 14 14 C 1.38634 * 119.75111 * 269.73272 * 13 12 11 15 15 C 1.37621 * 120.24995 * 179.72446 * 14 13 12 16 16 C 1.40718 * 119.74042 * 0.55812 * 15 14 13 17 17 C 1.41397 * 120.24091 * 179.68318 * 16 15 14 18 18 H 1.08000 * 120.00136 * 214.35177 * 17 16 15 19 19 C 1.39942 * 119.99712 * 34.35875 * 17 16 15 20 20 N 1.30822 * 120.00323 * 356.44478 * 19 17 16 21 21 Si 1.86805 * 120.00017 * 176.44478 * 19 17 16 22 22 H 1.48502 * 109.46733 * 59.99923 * 21 19 17 23 23 H 1.48493 * 109.47473 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47137 * 300.00232 * 21 19 17 25 25 C 1.40707 * 119.51368 * 359.71355 * 16 15 14 26 26 C 1.37619 * 119.74559 * 359.97438 * 25 16 15 27 27 C 1.46928 * 118.73582 * 306.65005 * 6 5 4 28 28 C 1.52759 * 109.01003 * 53.30341 * 27 6 5 29 29 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47466 * 299.96845 * 1 2 3 31 31 H 1.09005 * 109.47008 * 59.96824 * 1 2 3 32 32 H 0.96696 * 113.99763 * 60.02809 * 3 2 1 33 33 H 1.08999 * 109.49782 * 58.66802 * 4 2 1 34 34 H 1.09003 * 109.52832 * 298.58470 * 4 2 1 35 35 H 1.09007 * 109.59080 * 294.85116 * 5 4 2 36 36 H 1.09001 * 109.71016 * 174.49465 * 5 4 2 37 37 H 0.97003 * 120.00340 * 0.02562 * 11 9 7 38 38 H 1.08996 * 109.47314 * 299.99914 * 12 11 9 39 39 H 1.09003 * 109.47094 * 59.99946 * 12 11 9 40 40 H 1.08005 * 119.87276 * 359.96961 * 14 13 12 41 41 H 1.07998 * 120.12936 * 180.27286 * 15 14 13 42 42 H 0.97005 * 119.99940 * 180.02562 * 20 19 17 43 43 H 1.08009 * 120.13185 * 179.97438 * 25 16 15 44 44 H 1.08008 * 119.87240 * 180.02562 * 26 25 16 45 45 H 1.09002 * 109.58384 * 173.13935 * 27 6 5 46 46 H 1.09005 * 109.58459 * 293.56109 * 27 6 5 47 47 H 1.09002 * 109.56037 * 185.55527 * 28 27 6 48 48 H 1.08999 * 109.38771 * 65.51459 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0058 1.3474 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5713 -0.6887 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9613 -2.2578 0.0003 8 8 5.3859 -2.6925 -1.0502 9 6 5.4294 -2.8414 1.2941 10 8 5.1055 -2.3267 2.3443 11 7 6.2111 -3.9392 1.2945 12 6 6.6695 -4.5116 2.5629 13 6 7.5211 -5.7242 2.2882 14 6 6.9304 -6.9758 2.2079 15 6 7.6975 -8.0893 1.9519 16 6 9.0881 -7.9552 1.7831 17 6 9.8873 -9.0931 1.5263 18 1 10.8909 -9.1485 1.9215 19 6 9.3778 -10.1474 0.7600 20 7 8.1395 -10.1119 0.3397 21 14 10.4661 -11.6057 0.3371 22 1 10.9244 -12.2606 1.5887 23 1 9.6949 -12.5794 -0.4767 24 1 11.6439 -11.1366 -0.4361 25 6 9.6775 -6.6807 1.8724 26 6 8.8900 -5.5802 2.1228 27 6 3.5670 -0.6923 1.2644 28 6 2.0397 -0.7207 1.2502 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5133 0.8902 31 1 -0.3633 0.5144 -0.8897 32 1 1.7206 1.8652 0.7652 33 1 1.6573 -0.2208 -2.1398 34 1 1.6978 -1.7557 -1.2388 35 1 3.9144 0.3409 -1.3672 36 1 3.9438 -1.2831 -2.0983 37 1 6.4703 -4.3505 0.4551 38 1 7.2564 -3.7702 3.1050 39 1 5.8072 -4.8020 3.1631 40 1 5.8636 -7.0768 2.3428 41 1 7.2348 -9.0628 1.8854 42 1 7.7862 -10.8429 -0.1911 43 1 10.7440 -6.5664 1.7449 44 1 9.3402 -4.6009 2.1913 45 1 3.9345 -1.2907 2.0981 46 1 3.9096 0.3369 1.3717 47 1 1.6571 -0.2206 2.1399 48 1 1.6972 -1.7555 1.2387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326164212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:11 Heat of formation + Delta-G solvation = -92.157734 kcal Electronic energy + Delta-G solvation = -29800.248650 eV Core-core repulsion = 25626.998427 eV Total energy + Delta-G solvation = -4173.250223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.01876 -39.43286 -38.29499 -37.70889 -35.95669 -34.78727 -33.44814 -32.58648 -31.43159 -30.45693 -29.41688 -28.88872 -27.29184 -25.21897 -23.75740 -23.64710 -22.25415 -21.11057 -20.77878 -20.25315 -19.67515 -17.81407 -17.39071 -17.01207 -16.63917 -16.01318 -15.69854 -15.44011 -15.28596 -15.04122 -14.75584 -14.68081 -14.32040 -13.98466 -13.81823 -13.63964 -13.46376 -13.27795 -12.98549 -12.53090 -12.47607 -12.25502 -12.17933 -12.09249 -12.04793 -11.73008 -11.65638 -11.47886 -11.17083 -11.08474 -11.03919 -10.77035 -10.72238 -10.44002 -10.26681 -9.79214 -9.53629 -9.29220 -9.03909 -8.95120 -8.79926 -7.60827 -7.36503 -6.72850 -4.51879 1.49485 2.25635 2.69506 2.94307 3.03675 3.05310 3.10177 3.27036 3.66783 3.83876 3.89533 4.32411 4.37082 4.48917 4.53507 4.65598 4.81398 5.04345 5.10412 5.20903 5.27147 5.35842 5.44240 5.51355 5.55857 5.63385 5.64199 5.70995 5.74620 5.76798 5.81930 5.99121 6.12297 6.18669 6.23533 6.28989 6.68891 6.83236 7.00220 7.04110 7.13000 7.27342 7.30932 7.41263 7.50836 7.68754 7.85518 7.93875 7.98102 8.13332 8.19931 8.54648 8.80867 8.84708 10.17551 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.001912 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.471667 B =14640.735919 C =15052.278514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.126 3.874 3 O -0.556 6.556 4 C -0.118 4.118 5 C 0.111 3.889 6 N -0.580 5.580 7 C 0.505 3.495 8 O -0.522 6.522 9 C 0.503 3.497 10 O -0.525 6.525 11 N -0.677 5.677 12 C 0.179 3.821 13 C -0.239 4.239 14 C -0.086 4.086 15 C -0.156 4.156 16 C 0.113 3.887 17 C -0.461 4.461 18 H 0.077 0.923 19 C 0.070 3.930 20 N -0.805 5.805 21 Si 0.917 3.083 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.218 4.218 26 C -0.076 4.076 27 C 0.052 3.948 28 C -0.158 4.158 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.375 0.625 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.415 0.585 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.280 0.720 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.162 0.838 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 16.704 -0.052 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.085 3.915 3 O -0.362 6.362 4 C -0.156 4.156 5 C -0.011 4.011 6 N -0.314 5.314 7 C 0.288 3.712 8 O -0.397 6.397 9 C 0.284 3.716 10 O -0.406 6.406 11 N -0.328 5.328 12 C 0.058 3.942 13 C -0.241 4.241 14 C -0.105 4.105 15 C -0.176 4.176 16 C 0.111 3.889 17 C -0.491 4.491 18 H 0.095 0.905 19 C -0.146 4.146 20 N -0.432 5.432 21 Si 0.742 3.258 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.237 4.237 26 C -0.095 4.095 27 C -0.068 4.068 28 C -0.197 4.197 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.222 0.778 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.252 0.748 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.177 0.823 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.660 16.451 -0.578 21.391 hybrid contribution 0.078 -0.560 -0.273 0.628 sum -13.582 15.890 -0.850 20.922 Atomic orbital electron populations 1.22483 0.95644 1.02845 1.02509 1.21204 0.92331 0.82557 0.95361 1.86548 1.77239 1.23006 1.49440 1.21897 0.95820 1.00574 0.97304 1.21628 0.93295 0.99746 0.86474 1.47939 1.41454 1.33560 1.08429 1.20262 0.80467 0.80596 0.89880 1.90771 1.55846 1.60297 1.32829 1.20137 0.80326 0.82016 0.89105 1.90235 1.56511 1.60400 1.33434 1.46511 1.47385 1.26378 1.12495 1.20187 0.97043 0.93556 0.83376 1.18997 0.93489 0.92902 1.18676 1.20644 0.97500 0.92689 0.99703 1.21597 0.94600 0.98013 1.03376 1.17744 0.92514 0.91772 0.86916 1.19579 1.00604 1.00287 1.28614 0.90482 1.25917 0.95261 0.98918 0.94522 1.69734 1.14189 1.31432 1.27819 0.86220 0.80362 0.79957 0.79284 1.18962 1.20326 1.19004 1.21119 0.98247 0.92737 1.11625 1.20436 0.92971 0.96930 0.99140 1.23166 0.93193 1.01957 0.88516 1.22532 0.97158 1.01944 0.98022 0.91535 0.92217 0.91780 0.77801 0.89927 0.90191 0.90337 0.88869 0.74827 0.91510 0.91462 0.89214 0.85274 0.90866 0.88667 0.89174 0.82255 0.91376 0.90370 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 8.81 37.16 0.33 -0.73 16 2 C 0.13 0.96 0.98 -90.58 -0.09 0.87 16 3 O -0.56 -4.31 11.71 -35.23 -0.41 -4.72 16 4 C -0.12 -1.02 5.11 -26.62 -0.14 -1.15 16 5 C 0.11 1.20 6.19 -3.71 -0.02 1.17 16 6 N -0.58 -7.20 2.98 -173.54 -0.52 -7.72 16 7 C 0.51 7.61 7.76 -11.59 -0.09 7.52 16 8 O -0.52 -9.05 15.91 5.49 0.09 -8.96 16 9 C 0.50 7.81 7.80 -11.59 -0.09 7.72 16 10 O -0.53 -8.31 13.02 5.49 0.07 -8.24 16 11 N -0.68 -10.99 5.54 -61.91 -0.34 -11.34 16 12 C 0.18 3.02 5.79 -5.19 -0.03 2.99 16 13 C -0.24 -4.78 5.27 -104.33 -0.55 -5.33 16 14 C -0.09 -1.88 9.67 -39.66 -0.38 -2.26 16 15 C -0.16 -3.87 8.67 -38.87 -0.34 -4.20 16 16 C 0.11 2.89 5.55 -106.83 -0.59 2.30 16 17 C -0.46 -11.82 9.05 -37.74 -0.34 -12.16 16 18 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 19 C 0.07 1.72 5.42 -17.34 -0.09 1.62 16 20 N -0.81 -20.32 10.61 55.55 0.59 -19.73 16 21 Si 0.92 18.42 29.56 -169.99 -5.03 13.40 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 23 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.22 -5.07 9.80 -38.88 -0.38 -5.45 16 26 C -0.08 -1.59 9.67 -39.66 -0.38 -1.97 16 27 C 0.05 0.56 5.96 -3.93 -0.02 0.54 16 28 C -0.16 -1.29 5.07 -26.83 -0.14 -1.43 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.37 1.61 9.04 45.56 0.41 2.02 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.84 7.81 -51.93 -0.41 0.44 16 36 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 37 H 0.41 7.00 7.96 -40.82 -0.32 6.67 16 38 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 39 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.13 3.34 6.14 -52.49 -0.32 3.02 16 42 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 43 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 44 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.16 2.00 3.80 -56.94 -0.22 1.79 16 46 H 0.07 0.70 7.81 -51.93 -0.41 0.30 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -28.13 390.25 -9.26 -37.39 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.24 Total: 14.01 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -3.35 Total: -9.97 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.27 Total: -38.78 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.25 Total: -21.93 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.13 -9.26 -37.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326164212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.770 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds