Wall clock time and date at job start Wed Apr 1 2020 03:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.44969 * 2 1 4 4 C 1.53035 * 109.46207 * 240.02956 * 2 1 3 5 5 C 1.53184 * 109.31340 * 178.61652 * 4 2 1 6 6 N 1.46929 * 108.77936 * 54.63497 * 5 4 2 7 7 C 1.34770 * 120.63300 * 126.36279 * 6 5 4 8 8 O 1.21357 * 120.00354 * 1.63838 * 7 6 5 9 9 C 1.49447 * 120.00272 * 181.62905 * 7 6 5 10 10 O 1.21356 * 119.99835 * 352.99375 * 9 7 6 11 11 N 1.34773 * 120.00300 * 172.98951 * 9 7 6 12 12 C 1.46504 * 120.00157 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47321 * 179.97438 * 12 11 9 14 14 C 1.38634 * 119.75111 * 269.73272 * 13 12 11 15 15 C 1.37621 * 120.24995 * 179.72446 * 14 13 12 16 16 C 1.40718 * 119.74042 * 0.55812 * 15 14 13 17 17 C 1.41397 * 120.24091 * 179.68318 * 16 15 14 18 18 H 1.08000 * 120.00136 * 214.35177 * 17 16 15 19 19 C 1.39942 * 119.99712 * 34.35875 * 17 16 15 20 20 N 1.30822 * 120.00323 * 356.44478 * 19 17 16 21 21 Si 1.86805 * 120.00017 * 176.44478 * 19 17 16 22 22 H 1.48502 * 109.46733 * 59.99923 * 21 19 17 23 23 H 1.48493 * 109.47473 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47137 * 300.00232 * 21 19 17 25 25 C 1.40707 * 119.51368 * 359.71355 * 16 15 14 26 26 C 1.37619 * 119.74559 * 359.97438 * 25 16 15 27 27 C 1.46928 * 118.73582 * 306.65005 * 6 5 4 28 28 C 1.52759 * 109.01003 * 53.30341 * 27 6 5 29 29 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47466 * 299.96845 * 1 2 3 31 31 H 1.09005 * 109.47008 * 59.96824 * 1 2 3 32 32 H 0.96696 * 113.99763 * 60.02809 * 3 2 1 33 33 H 1.08999 * 109.49782 * 58.66802 * 4 2 1 34 34 H 1.09003 * 109.52832 * 298.58470 * 4 2 1 35 35 H 1.09007 * 109.59080 * 294.85116 * 5 4 2 36 36 H 1.09001 * 109.71016 * 174.49465 * 5 4 2 37 37 H 0.97003 * 120.00340 * 0.02562 * 11 9 7 38 38 H 1.08996 * 109.47314 * 299.99914 * 12 11 9 39 39 H 1.09003 * 109.47094 * 59.99946 * 12 11 9 40 40 H 1.08005 * 119.87276 * 359.96961 * 14 13 12 41 41 H 1.07998 * 120.12936 * 180.27286 * 15 14 13 42 42 H 0.97005 * 119.99940 * 180.02562 * 20 19 17 43 43 H 1.08009 * 120.13185 * 179.97438 * 25 16 15 44 44 H 1.08008 * 119.87240 * 180.02562 * 26 25 16 45 45 H 1.09002 * 109.58384 * 173.13935 * 27 6 5 46 46 H 1.09005 * 109.58459 * 293.56109 * 27 6 5 47 47 H 1.09002 * 109.56037 * 185.55527 * 28 27 6 48 48 H 1.08999 * 109.38771 * 65.51459 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0058 1.3474 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5713 -0.6887 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9613 -2.2578 0.0003 8 8 5.3859 -2.6925 -1.0502 9 6 5.4294 -2.8414 1.2941 10 8 5.1055 -2.3267 2.3443 11 7 6.2111 -3.9392 1.2945 12 6 6.6695 -4.5116 2.5629 13 6 7.5211 -5.7242 2.2882 14 6 6.9304 -6.9758 2.2079 15 6 7.6975 -8.0893 1.9519 16 6 9.0881 -7.9552 1.7831 17 6 9.8873 -9.0931 1.5263 18 1 10.8909 -9.1485 1.9215 19 6 9.3778 -10.1474 0.7600 20 7 8.1395 -10.1119 0.3397 21 14 10.4661 -11.6057 0.3371 22 1 10.9244 -12.2606 1.5887 23 1 9.6949 -12.5794 -0.4767 24 1 11.6439 -11.1366 -0.4361 25 6 9.6775 -6.6807 1.8724 26 6 8.8900 -5.5802 2.1228 27 6 3.5670 -0.6923 1.2644 28 6 2.0397 -0.7207 1.2502 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5133 0.8902 31 1 -0.3633 0.5144 -0.8897 32 1 1.7206 1.8652 0.7652 33 1 1.6573 -0.2208 -2.1398 34 1 1.6978 -1.7557 -1.2388 35 1 3.9144 0.3409 -1.3672 36 1 3.9438 -1.2831 -2.0983 37 1 6.4703 -4.3505 0.4551 38 1 7.2564 -3.7702 3.1050 39 1 5.8072 -4.8020 3.1631 40 1 5.8636 -7.0768 2.3428 41 1 7.2348 -9.0628 1.8854 42 1 7.7862 -10.8429 -0.1911 43 1 10.7440 -6.5664 1.7449 44 1 9.3402 -4.6009 2.1913 45 1 3.9345 -1.2907 2.0981 46 1 3.9096 0.3369 1.3717 47 1 1.6571 -0.2206 2.1399 48 1 1.6972 -1.7555 1.2387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326164212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:10 Heat of formation + Delta-G solvation = -110.649936 kcal Electronic energy + Delta-G solvation = -29801.050532 eV Core-core repulsion = 25626.998427 eV Total energy + Delta-G solvation = -4174.052105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.11866 -40.39078 -39.56709 -39.22226 -36.98409 -36.16010 -35.07267 -33.29880 -32.21284 -32.14080 -31.19847 -29.67695 -28.81945 -26.51056 -25.07726 -24.47384 -23.28157 -22.89763 -21.86727 -21.72287 -20.68419 -19.23048 -18.91640 -18.16657 -17.45360 -17.19504 -16.99205 -16.86647 -16.36097 -15.97911 -15.81567 -15.74190 -15.51517 -15.40121 -15.21203 -14.94673 -14.53502 -14.20574 -14.18722 -13.86196 -13.81067 -13.66426 -13.40465 -13.13440 -12.88794 -12.81486 -12.79669 -12.71174 -12.51007 -12.40574 -12.21705 -12.11906 -12.06354 -11.54648 -11.39209 -11.32423 -11.09255 -10.98308 -10.30488 -10.06186 -9.81871 -9.39966 -9.17225 -8.53658 -6.42699 0.28430 0.75178 1.11726 1.32975 1.38735 1.49765 1.54573 2.06508 2.21704 2.47988 2.80557 3.26657 3.30777 3.68277 3.71981 3.74534 3.93426 4.05330 4.08140 4.28698 4.29670 4.38652 4.48806 4.54303 4.64460 4.64995 4.68223 4.73336 4.78501 4.86940 4.93130 4.95487 5.04485 5.07614 5.16452 5.23205 5.29515 5.31643 5.34235 5.45124 5.52566 5.69927 5.84807 5.98278 6.10301 6.16756 6.23446 6.37235 6.66217 6.69489 6.88964 6.92733 6.94023 7.00100 8.38335 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.001912 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.471667 B =14640.735919 C =15052.278514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.130 3.870 3 O -0.569 6.569 4 C -0.118 4.118 5 C 0.109 3.891 6 N -0.571 5.571 7 C 0.502 3.498 8 O -0.553 6.553 9 C 0.508 3.492 10 O -0.526 6.526 11 N -0.681 5.681 12 C 0.188 3.812 13 C -0.219 4.219 14 C -0.088 4.088 15 C -0.180 4.180 16 C 0.079 3.921 17 C -0.498 4.498 18 H 0.075 0.925 19 C 0.027 3.973 20 N -0.838 5.838 21 Si 0.987 3.013 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.263 1.263 25 C -0.231 4.231 26 C -0.076 4.076 27 C 0.051 3.949 28 C -0.153 4.153 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.391 0.609 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.412 0.588 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.285 0.715 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.146 0.854 46 H 0.076 0.924 47 H 0.101 0.899 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.173 18.676 0.392 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.089 3.911 3 O -0.378 6.378 4 C -0.155 4.155 5 C -0.013 4.013 6 N -0.304 5.304 7 C 0.284 3.716 8 O -0.431 6.431 9 C 0.290 3.710 10 O -0.406 6.406 11 N -0.331 5.331 12 C 0.067 3.933 13 C -0.221 4.221 14 C -0.107 4.107 15 C -0.200 4.200 16 C 0.077 3.923 17 C -0.529 4.529 18 H 0.093 0.907 19 C -0.185 4.185 20 N -0.465 5.465 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.194 1.194 24 H -0.187 1.187 25 C -0.251 4.251 26 C -0.094 4.094 27 C -0.070 4.070 28 C -0.192 4.192 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.240 0.760 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.248 0.752 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.095 0.905 43 H 0.118 0.882 44 H 0.138 0.862 45 H 0.163 0.837 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.077 18.478 -0.096 23.849 hybrid contribution 0.395 -0.920 -0.341 1.057 sum -14.682 17.558 -0.437 22.892 Atomic orbital electron populations 1.22420 0.94079 1.03133 1.03310 1.21124 0.93360 0.82426 0.94148 1.86516 1.77582 1.23028 1.50629 1.21917 0.93878 1.00994 0.98756 1.21737 0.94978 0.99332 0.85253 1.48098 1.40128 1.32326 1.09822 1.20187 0.80982 0.81235 0.89180 1.90759 1.57276 1.61592 1.33512 1.20166 0.79925 0.81613 0.89344 1.90278 1.56387 1.60378 1.33590 1.46343 1.47948 1.26874 1.11968 1.20084 0.97072 0.92400 0.83778 1.19284 0.93668 0.93506 1.15608 1.20870 0.98357 0.92598 0.98846 1.21536 0.94860 0.98265 1.05319 1.18081 0.93180 0.92892 0.88152 1.19818 1.00919 1.01724 1.30434 0.90691 1.26756 0.96541 1.01305 0.93920 1.69820 1.15623 1.32450 1.28615 0.85172 0.78408 0.76480 0.79146 1.18337 1.19448 1.18736 1.21307 0.98934 0.92825 1.12003 1.20758 0.93258 0.97506 0.97927 1.23181 0.95112 1.01681 0.86989 1.22517 0.95000 1.02085 0.99551 0.91505 0.90744 0.91709 0.75973 0.88740 0.90373 0.90025 0.90158 0.75195 0.90153 0.90432 0.87282 0.87266 0.90479 0.88162 0.86229 0.83742 0.90618 0.88014 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 8.81 71.98 0.63 -0.90 16 2 C 0.13 1.62 0.98 -10.77 -0.01 1.61 16 3 O -0.57 -7.16 11.71 -148.98 -1.74 -8.90 16 4 C -0.12 -1.81 5.11 30.67 0.16 -1.66 16 5 C 0.11 2.23 6.19 86.36 0.53 2.77 16 6 N -0.57 -13.51 2.98 -821.31 -2.45 -15.95 16 7 C 0.50 14.77 7.76 87.27 0.68 15.45 16 8 O -0.55 -19.20 15.91 -3.27 -0.05 -19.25 16 9 C 0.51 15.07 7.80 87.27 0.68 15.75 16 10 O -0.53 -15.64 13.02 -3.26 -0.04 -15.68 16 11 N -0.68 -21.11 5.54 -468.14 -2.59 -23.70 16 12 C 0.19 5.90 5.79 85.63 0.50 6.39 16 13 C -0.22 -8.48 5.27 -19.68 -0.10 -8.59 16 14 C -0.09 -3.81 9.67 22.22 0.21 -3.60 16 15 C -0.18 -9.21 8.67 22.73 0.20 -9.01 16 16 C 0.08 4.19 5.55 -21.29 -0.12 4.07 16 17 C -0.50 -26.61 9.05 23.46 0.21 -26.40 16 18 H 0.07 3.85 7.85 -2.91 -0.02 3.82 16 19 C 0.03 1.38 5.42 85.26 0.46 1.84 16 20 N -0.84 -43.82 10.61 21.83 0.23 -43.58 16 21 Si 0.99 38.51 29.56 68.60 2.03 40.53 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 C -0.23 -10.89 9.80 22.73 0.22 -10.67 16 26 C -0.08 -3.08 9.67 22.22 0.21 -2.87 16 27 C 0.05 0.98 5.96 86.22 0.51 1.49 16 28 C -0.15 -2.10 5.07 30.53 0.15 -1.95 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 32 H 0.39 2.06 9.04 -74.06 -0.67 1.39 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.64 7.81 -2.38 -0.02 1.62 16 36 H 0.08 1.87 7.01 -2.39 -0.02 1.85 16 37 H 0.41 13.56 7.96 -92.71 -0.74 12.83 16 38 H 0.08 2.36 8.08 -2.39 -0.02 2.34 16 39 H 0.08 2.32 8.08 -2.39 -0.02 2.30 16 40 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.11 5.95 6.14 -2.91 -0.02 5.93 16 42 H 0.28 13.63 8.30 -92.70 -0.77 12.86 16 43 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 45 H 0.15 3.36 3.80 -81.71 -0.31 3.05 16 46 H 0.08 1.38 7.81 -2.38 -0.02 1.36 16 47 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -62.21 390.25 -0.19 -62.39 By element: Atomic # 1 Polarization: 41.12 SS G_CDS: -0.71 Total: 40.41 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 5.14 Total: -16.27 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -4.81 Total: -83.24 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.84 Total: -43.83 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.53 kcal Total: -62.21 -0.19 -62.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326164212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.258 kcal (2) G-P(sol) polarization free energy of solvation -62.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds