Wall clock time and date at job start Wed Apr 1 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99700 * 2 1 4 4 C 1.52997 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46973 * 55.00023 * 4 3 2 6 6 O 1.42898 * 109.47435 * 295.00073 * 4 3 2 7 7 C 1.53002 * 109.47237 * 174.99550 * 4 3 2 8 8 N 1.46902 * 109.47415 * 181.83526 * 7 4 3 9 9 C 1.48556 * 111.00239 * 175.66716 * 8 7 4 10 10 C 1.54380 * 104.59657 * 200.96000 * 9 8 7 11 11 H 1.08992 * 110.32253 * 264.96130 * 10 9 8 12 12 N 1.46493 * 110.40842 * 142.79320 * 10 9 8 13 13 C 1.34776 * 119.99965 * 89.31853 * 12 10 9 14 14 O 1.21279 * 120.00138 * 359.97438 * 13 12 10 15 15 C 1.50700 * 119.99743 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.46968 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00176 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99877 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00107 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99493 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99903 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46949 * 90.00078 * 21 19 17 23 23 H 1.48503 * 109.46917 * 209.99891 * 21 19 17 24 24 H 1.48495 * 109.47105 * 329.99976 * 21 19 17 25 25 C 1.54270 * 105.05837 * 23.85303 * 10 9 8 26 26 C 1.52999 * 110.32214 * 118.89391 * 25 10 9 27 27 C 1.52996 * 110.32361 * 241.00203 * 25 10 9 28 28 C 1.48562 * 110.99680 * 60.24504 * 8 7 4 29 29 H 1.09007 * 109.47004 * 60.00567 * 1 2 3 30 30 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47431 * 300.00557 * 1 2 3 32 32 H 1.08996 * 109.47334 * 59.99611 * 3 2 1 33 33 H 1.09002 * 109.47028 * 299.99640 * 3 2 1 34 34 H 0.96708 * 113.99470 * 299.99949 * 6 4 3 35 35 H 1.09002 * 109.46859 * 61.83325 * 7 4 3 36 36 H 1.08999 * 109.47164 * 301.83577 * 7 4 3 37 37 H 1.09003 * 110.41247 * 82.18089 * 9 8 7 38 38 H 1.08998 * 110.50928 * 319.79220 * 9 8 7 39 39 H 0.97000 * 120.00360 * 269.30810 * 12 10 9 40 40 H 1.08998 * 109.47649 * 299.99432 * 15 13 12 41 41 H 1.09001 * 109.47260 * 59.99756 * 15 13 12 42 42 H 0.97008 * 119.99466 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.46944 * 60.00043 * 26 25 10 44 44 H 1.08999 * 109.47313 * 300.00550 * 26 25 10 45 45 H 1.08997 * 109.47061 * 179.97438 * 26 25 10 46 46 H 1.08997 * 109.47394 * 298.57798 * 27 25 10 47 47 H 1.09000 * 109.47181 * 58.57348 * 27 25 10 48 48 H 1.08994 * 109.47090 * 178.57136 * 27 25 10 49 49 H 1.09003 * 110.40897 * 40.26990 * 28 8 7 50 50 H 1.08996 * 110.41955 * 277.81991 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5683 -0.8410 6 8 3.9649 0.5798 1.2219 7 6 4.1573 2.5770 -0.1252 8 7 5.6208 2.4576 -0.1688 9 6 6.2565 3.7810 -0.3951 10 6 7.6604 3.4493 -0.9451 11 1 8.3914 3.4410 -0.1368 12 7 8.0491 4.4193 -1.9717 13 6 8.6971 5.5480 -1.6215 14 8 8.9580 5.7608 -0.4563 15 6 9.0975 6.5456 -2.6777 16 16 9.9428 7.9433 -1.8979 17 6 10.2890 8.9239 -3.3203 18 1 9.9835 8.5830 -4.2985 19 6 10.9532 10.1349 -3.1835 20 7 11.3250 10.5506 -1.9912 21 14 11.3195 11.1748 -4.6915 22 1 10.1892 12.1061 -4.9369 23 1 12.5630 11.9543 -4.4650 24 1 11.4975 10.2906 -5.8711 25 6 7.5270 2.0413 -1.5614 26 6 7.8387 2.0849 -3.0586 27 6 8.4632 1.0603 -0.8529 28 6 6.0538 1.6409 -1.3318 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.7175 1.0755 2.0146 35 1 3.8676 3.1832 0.7331 36 1 3.8040 3.0513 -1.0408 37 1 6.3358 4.3301 0.5431 38 1 5.6886 4.3576 -1.1253 39 1 7.8403 4.2493 -2.9036 40 1 9.7676 6.0685 -3.3928 41 1 8.2077 6.9028 -3.1960 42 1 11.7895 11.3968 -1.8956 43 1 8.8573 2.4433 -3.2074 44 1 7.1405 2.7583 -3.5557 45 1 7.7409 1.0842 -3.4794 46 1 9.4955 1.3857 -0.9817 47 1 8.2216 1.0305 0.2096 48 1 8.3394 0.0659 -1.2816 49 1 5.4535 1.8809 -2.2094 50 1 5.9806 0.5786 -1.0989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330178891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:21 Heat of formation + Delta-G solvation = -124.194433 kcal Electronic energy + Delta-G solvation = -28593.466342 eV Core-core repulsion = 24554.270855 eV Total energy + Delta-G solvation = -4039.195487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.60085 -39.07060 -38.30109 -36.92566 -34.78941 -33.25853 -32.43943 -31.18755 -29.83256 -28.25931 -27.50420 -27.06958 -26.20712 -25.49014 -24.18284 -22.18500 -21.39171 -20.25754 -19.31250 -17.86176 -17.44594 -16.96135 -16.50215 -16.46864 -16.13489 -15.73981 -15.40907 -15.27087 -14.81808 -14.73845 -14.61553 -14.22685 -14.04307 -13.83882 -13.59446 -13.41675 -12.92216 -12.83416 -12.65444 -12.54982 -12.46837 -12.31618 -12.04848 -12.02372 -11.80393 -11.54598 -11.12774 -11.07786 -11.04951 -11.03005 -10.96530 -10.78242 -10.69498 -10.32376 -10.17730 -9.82454 -9.40863 -9.08255 -8.92311 -8.72039 -8.24636 -6.51020 -6.22855 -3.93348 2.93380 3.05987 3.11292 3.21054 3.26899 3.30895 3.62152 3.89024 4.12752 4.18554 4.19597 4.33028 4.49782 4.57732 4.62147 4.69313 4.81458 4.84908 4.92286 4.95804 5.04225 5.06099 5.11255 5.12408 5.17904 5.19104 5.21511 5.34784 5.39565 5.47317 5.57589 5.60763 5.68175 5.72346 5.78425 5.86396 5.93829 5.96837 6.00823 6.11783 6.16136 6.40938 6.57762 6.71383 6.74317 7.40506 7.58271 7.69807 8.33912 8.61045 9.22478 10.84525 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.001908 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.808326 B =14674.377891 C =15207.600231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.028 3.972 4 C 0.115 3.885 5 H 0.105 0.895 6 O -0.538 6.538 7 C 0.014 3.986 8 N -0.493 5.493 9 C 0.021 3.979 10 C 0.152 3.848 11 H 0.103 0.897 12 N -0.734 5.734 13 C 0.531 3.469 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.074 4.074 26 C -0.146 4.146 27 C -0.133 4.133 28 C 0.039 3.961 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.372 0.628 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.399 0.601 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.056 0.944 49 H 0.044 0.956 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.122 -21.984 0.495 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.050 4.050 4 C 0.055 3.945 5 H 0.122 0.878 6 O -0.343 6.343 7 C -0.115 4.115 8 N -0.217 5.217 9 C -0.108 4.108 10 C 0.046 3.954 11 H 0.121 0.879 12 N -0.391 5.391 13 C 0.317 3.683 14 O -0.389 6.389 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.075 4.075 26 C -0.204 4.204 27 C -0.191 4.191 28 C -0.089 4.089 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.219 0.781 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.236 0.764 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.081 -22.325 2.654 28.851 hybrid contribution -1.119 1.578 -3.257 3.788 sum -19.200 -20.747 -0.603 28.275 Atomic orbital electron populations 1.22782 0.80994 1.02951 0.99957 1.87955 1.19609 1.27014 1.95363 1.23298 0.95153 0.85524 1.00980 1.21859 0.89608 0.93533 0.89498 0.87758 1.86649 1.80908 1.51908 1.14789 1.22912 0.89488 0.97044 1.02048 1.65358 1.06001 1.10702 1.39602 1.23614 0.94857 0.90791 1.01512 1.21628 0.95898 0.86615 0.91274 0.87931 1.46346 1.60982 1.21192 1.10587 1.20347 0.76482 0.81352 0.90074 1.90703 1.53098 1.75518 1.19552 1.23537 1.04641 1.01280 1.01009 1.85402 1.71925 1.13894 1.11978 1.22870 1.43987 1.07549 0.94048 0.90966 1.24990 0.94886 0.96781 0.96911 1.70020 1.37117 1.21163 1.21931 0.86171 0.77982 0.79748 0.81622 1.20299 1.20722 1.19713 1.21533 0.95248 0.94841 0.95904 1.21894 1.02260 1.02111 0.94146 1.21808 0.98524 0.97744 1.00994 1.23305 0.94268 0.99497 0.91821 0.94097 0.89440 0.94029 0.92776 0.92520 0.78086 0.89844 0.93594 0.89201 0.93303 0.76426 0.89269 0.89384 0.92178 0.91334 0.92563 0.91877 0.92367 0.91459 0.92460 0.93776 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.33 10.67 -40.08 -0.43 -3.76 16 3 C 0.03 0.19 5.57 37.16 0.21 0.39 16 4 C 0.12 0.88 3.09 -26.73 -0.08 0.80 16 5 H 0.10 0.89 6.85 -51.92 -0.36 0.53 16 6 O -0.54 -4.98 13.20 -40.08 -0.53 -5.51 16 7 C 0.01 0.11 4.56 -3.82 -0.02 0.09 16 8 N -0.49 -4.75 5.34 -229.97 -1.23 -5.98 16 9 C 0.02 0.24 6.21 -2.18 -0.01 0.23 16 10 C 0.15 1.84 3.03 -66.55 -0.20 1.64 16 11 H 0.10 1.50 7.13 -51.93 -0.37 1.13 16 12 N -0.73 -9.68 4.52 -52.47 -0.24 -9.91 16 13 C 0.53 9.73 7.85 -10.99 -0.09 9.64 16 14 O -0.51 -11.50 15.51 5.56 0.09 -11.41 16 15 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 21 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C -0.07 -0.69 1.03 -153.12 -0.16 -0.85 16 26 C -0.15 -1.17 7.11 37.16 0.26 -0.90 16 27 C -0.13 -1.23 8.24 37.16 0.31 -0.93 16 28 C 0.04 0.34 4.44 -2.18 -0.01 0.33 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.37 2.28 9.05 45.56 0.41 2.69 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.33 7.98 -51.93 -0.41 -0.09 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.55 7.83 -51.93 -0.41 0.15 16 39 H 0.40 4.24 5.91 -40.82 -0.24 4.00 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 43 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 44 H 0.06 0.41 6.93 -51.93 -0.36 0.05 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.04 0.35 7.65 -51.93 -0.40 -0.05 16 50 H 0.09 0.78 7.35 -51.93 -0.38 0.40 16 LS Contribution 413.59 15.07 6.23 6.23 Total: -1.00 -35.33 413.59 -8.82 -44.15 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.96 Total: 3.05 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 1.74 Total: -4.03 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.73 Total: -41.23 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.87 Total: -20.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.33 -8.82 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330178891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.040 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds