Wall clock time and date at job start Wed Apr 1 2020 04:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35895 * 120.90128 * 2 1 4 4 C 1.40946 * 119.83621 * 179.97438 * 3 2 1 5 5 O 1.21798 * 119.15714 * 180.02562 * 4 3 2 6 6 O 1.34245 * 121.68706 * 359.96668 * 4 3 2 7 7 C 1.35037 * 121.46015 * 0.05220 * 6 4 3 8 8 C 1.38591 * 120.72402 * 179.97438 * 7 6 4 9 9 C 1.38737 * 119.77481 * 179.97438 * 8 7 6 10 10 N 1.39150 * 119.74975 * 179.97438 * 9 8 7 11 11 C 1.46496 * 120.00061 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47414 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46812 * 59.99599 * 12 11 10 14 14 O 1.42905 * 109.46812 * 300.00001 * 12 11 10 15 15 C 1.52997 * 109.47452 * 179.97438 * 12 11 10 16 16 N 1.46898 * 109.47386 * 184.99670 * 15 12 11 17 17 C 1.46903 * 110.99677 * 66.04504 * 16 15 12 18 18 C 1.46893 * 111.00045 * 189.99830 * 16 15 12 19 19 C 1.50707 * 109.46916 * 170.00080 * 18 16 15 20 20 H 1.07992 * 120.00119 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99842 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00033 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99891 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46950 * 90.00162 * 23 21 19 25 25 H 1.48499 * 109.46880 * 209.99691 * 23 21 19 26 26 H 1.48490 * 109.47119 * 329.99696 * 23 21 19 27 27 C 1.39582 * 120.50043 * 0.25347 * 9 8 7 28 28 C 1.36385 * 120.40732 * 359.45905 * 27 9 8 29 29 C 1.40034 * 119.81629 * 0.55792 * 28 27 9 30 30 H 1.08999 * 109.47789 * 270.03045 * 1 2 3 31 31 H 1.09008 * 109.46819 * 30.02805 * 1 2 3 32 32 H 1.09005 * 109.47092 * 150.02195 * 1 2 3 33 33 H 1.07998 * 120.08635 * 359.94848 * 3 2 1 34 34 H 1.08002 * 120.11609 * 359.97438 * 8 7 6 35 35 H 0.97006 * 120.00262 * 359.97438 * 10 9 8 36 36 H 1.09001 * 109.47459 * 59.99837 * 11 10 9 37 37 H 1.09002 * 109.47021 * 299.99730 * 11 10 9 38 38 H 0.96705 * 113.99788 * 299.99794 * 14 12 11 39 39 H 1.09004 * 109.46881 * 305.00279 * 15 12 11 40 40 H 1.09002 * 109.47196 * 64.99794 * 15 12 11 41 41 H 1.09006 * 109.46710 * 60.00341 * 17 16 15 42 42 H 1.08996 * 109.46817 * 179.97438 * 17 16 15 43 43 H 1.08994 * 109.47022 * 300.00081 * 17 16 15 44 44 H 1.09001 * 109.47660 * 290.00002 * 18 16 15 45 45 H 1.09001 * 109.46937 * 50.00689 * 18 16 15 46 46 H 0.96998 * 120.00663 * 180.02562 * 22 21 19 47 47 H 1.07999 * 119.79659 * 179.74649 * 27 9 8 48 48 H 1.07994 * 120.09276 * 180.23025 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.1661 0.0000 4 6 3.6141 1.1399 0.0005 5 8 4.2272 2.1923 0.0010 6 8 4.2979 -0.0154 0.0017 7 6 3.6656 -1.2086 0.0014 8 6 4.3868 -2.3921 0.0021 9 6 3.7170 -3.6070 0.0023 10 7 4.4417 -4.7950 0.0025 11 6 3.7401 -6.0810 0.0033 12 6 4.7621 -7.2196 0.0027 13 1 5.3879 -7.1466 0.8921 14 8 5.5806 -7.1243 -1.1648 15 6 4.0293 -8.5627 0.0041 16 7 5.0061 -9.6534 0.1242 17 6 5.6754 -9.6190 1.4314 18 6 4.3704 -10.9572 -0.1077 19 6 5.4323 -12.0207 -0.2206 20 1 6.4749 -11.7546 -0.1288 21 6 5.0725 -13.3333 -0.4410 22 7 5.9991 -14.2615 -0.5390 23 14 3.2691 -13.7934 -0.6005 24 1 2.8590 -13.7018 -2.0247 25 1 3.0679 -15.1826 -0.1158 26 1 2.4468 -12.8617 0.2124 27 6 2.3218 -3.6468 -0.0035 28 6 1.5982 -2.4908 0.0016 29 6 2.2587 -1.2560 0.0010 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6811 2.1105 -0.0008 34 1 5.4666 -2.3687 0.0025 35 1 5.4115 -4.7716 0.0021 36 1 3.1146 -6.1542 -0.8864 37 1 3.1154 -6.1535 0.8936 38 1 5.0890 -7.1817 -1.9956 39 1 3.3387 -8.5989 0.8467 40 1 3.4730 -8.6741 -0.9266 41 1 4.9332 -9.7259 2.2225 42 1 6.3928 -10.4372 1.4938 43 1 6.1964 -8.6687 1.5479 44 1 3.7082 -11.1920 0.7257 45 1 3.7931 -10.9208 -1.0315 46 1 5.7461 -15.1849 -0.6944 47 1 1.8121 -4.5990 -0.0074 48 1 0.5189 -2.5275 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331970604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:52 Heat of formation + Delta-G solvation = -69.878800 kcal Electronic energy + Delta-G solvation = -28969.590750 eV Core-core repulsion = 24797.306615 eV Total energy + Delta-G solvation = -4172.284136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.12095 -39.77040 -38.55819 -37.62874 -36.63187 -35.80872 -34.40676 -32.57316 -31.44226 -30.55704 -29.28908 -28.84618 -27.73493 -26.34813 -24.70588 -23.69369 -23.39612 -22.21982 -21.45511 -20.34852 -19.52771 -18.54724 -17.69190 -17.09883 -16.99178 -16.97531 -16.32679 -16.17072 -15.50648 -15.42603 -14.86137 -14.58469 -14.43263 -14.38488 -14.21784 -14.10967 -14.03754 -13.83550 -13.61646 -13.41229 -13.19091 -12.94132 -12.81581 -12.37593 -12.21532 -12.03514 -11.81644 -11.77817 -11.41604 -11.14036 -11.07196 -10.96854 -10.65425 -10.54943 -10.50482 -10.18646 -9.81126 -9.71567 -9.35764 -9.13114 -8.64856 -7.83441 -7.49792 -6.12268 -4.10346 -0.00976 0.76935 1.27993 2.08621 2.57644 2.93153 3.20607 3.28253 3.28822 3.38824 3.87421 3.90460 4.05122 4.19700 4.33854 4.38205 4.44118 4.55984 4.71355 4.75402 4.86369 4.89967 4.94816 4.97738 5.12153 5.18295 5.21066 5.22550 5.31448 5.33619 5.38229 5.50795 5.67621 5.71935 5.78681 5.90866 5.91515 5.97753 6.02013 6.10648 6.54872 6.71207 6.73849 6.86409 6.94713 7.16903 7.26146 7.46552 7.65354 7.75151 7.91857 8.56478 8.96744 9.48483 11.00776 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.001661 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.417211 B =16848.250445 C =17628.132793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.053 3.947 3 C -0.288 4.288 4 C 0.513 3.487 5 O -0.477 6.477 6 O -0.275 6.275 7 C 0.203 3.797 8 C -0.228 4.228 9 C 0.281 3.719 10 N -0.719 5.719 11 C 0.084 3.916 12 C 0.101 3.899 13 H 0.105 0.895 14 O -0.542 6.542 15 C 0.024 3.976 16 N -0.520 5.520 17 C 0.033 3.967 18 C 0.163 3.837 19 C -0.511 4.511 20 H 0.082 0.918 21 C 0.068 3.932 22 N -0.898 5.898 23 Si 0.875 3.125 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.269 1.269 27 C -0.215 4.215 28 C -0.005 4.005 29 C -0.225 4.225 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.411 0.589 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.374 0.626 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.011 0.989 42 H 0.082 0.918 43 H 0.049 0.951 44 H -0.012 1.012 45 H 0.023 0.977 46 H 0.264 0.736 47 H 0.134 0.866 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 26.151 1.903 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 C -0.307 4.307 4 C 0.364 3.636 5 O -0.366 6.366 6 O -0.187 6.187 7 C 0.157 3.843 8 C -0.252 4.252 9 C 0.172 3.828 10 N -0.344 5.344 11 C -0.041 4.041 12 C 0.041 3.959 13 H 0.123 0.877 14 O -0.346 6.346 15 C -0.106 4.106 16 N -0.244 5.244 17 C -0.115 4.115 18 C 0.036 3.964 19 C -0.549 4.549 20 H 0.100 0.900 21 C -0.133 4.133 22 N -0.537 5.537 23 Si 0.703 3.297 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.194 1.194 27 C -0.237 4.237 28 C -0.024 4.024 29 C -0.227 4.227 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.248 0.752 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.221 0.779 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.029 0.971 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.006 0.994 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.152 0.848 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.569 26.335 1.956 29.246 hybrid contribution -1.819 -0.583 0.149 1.916 sum -14.389 25.752 2.105 29.574 Atomic orbital electron populations 1.21017 0.89405 1.04267 1.03825 1.21470 0.96588 0.91171 0.85535 1.22189 0.92816 1.00183 1.15550 1.19148 0.88210 0.81069 0.75197 1.90968 1.72195 1.25780 1.47662 1.83550 1.43646 1.13890 1.77566 1.18602 0.89467 0.82869 0.93392 1.19697 1.00637 0.87853 1.17053 1.17637 0.91043 0.85675 0.88472 1.44755 1.09237 1.02351 1.78017 1.22295 0.96225 0.83112 1.02467 1.22157 0.91834 0.91458 0.90472 0.87705 1.86627 1.36985 1.95688 1.15334 1.22701 0.94404 0.92252 1.01254 1.61858 1.28677 1.03344 1.30499 1.22315 0.98785 1.01733 0.88648 1.20200 0.94971 0.86289 0.94892 1.21015 0.94594 0.90202 1.49118 0.90048 1.24910 0.97110 0.96403 0.94926 1.69884 1.32679 1.01418 1.49716 0.86865 0.86143 0.77963 0.78762 1.20133 1.21137 1.19416 1.20492 0.91759 0.99508 1.11971 1.20630 0.99865 0.89900 0.92023 1.18727 0.91515 0.94227 1.18273 0.89195 0.89970 0.90078 0.82543 0.84057 0.75177 0.91106 0.90730 0.77935 0.94880 0.90759 0.97076 0.89892 0.93234 0.99449 0.95913 0.92586 0.84798 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.41 9.64 36.00 0.35 -0.07 16 2 C 0.05 0.37 6.07 -102.19 -0.62 -0.25 16 3 C -0.29 -2.49 9.62 -39.40 -0.38 -2.87 16 4 C 0.51 6.28 7.89 31.76 0.25 6.53 16 5 O -0.48 -7.32 17.91 -19.60 -0.35 -7.67 16 6 O -0.28 -3.34 9.82 -20.89 -0.21 -3.54 16 7 C 0.20 2.03 6.76 -38.49 -0.26 1.77 16 8 C -0.23 -2.05 9.83 -39.27 -0.39 -2.44 16 9 C 0.28 2.24 6.65 -83.85 -0.56 1.69 16 10 N -0.72 -5.41 5.60 -58.64 -0.33 -5.74 16 11 C 0.08 0.62 4.55 -4.04 -0.02 0.60 16 12 C 0.10 1.06 3.01 -26.73 -0.08 0.98 16 13 H 0.11 1.17 6.33 -51.93 -0.33 0.85 16 14 O -0.54 -6.50 13.03 -35.23 -0.46 -6.96 16 15 C 0.02 0.32 4.60 -3.83 -0.02 0.30 16 16 N -0.52 -9.86 4.70 -244.37 -1.15 -11.01 16 17 C 0.03 0.59 9.14 60.07 0.55 1.14 16 18 C 0.16 3.70 3.79 -4.98 -0.02 3.69 16 19 C -0.51 -14.05 9.01 -34.44 -0.31 -14.36 16 20 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 22 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 23 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 27 C -0.22 -1.46 9.22 -39.75 -0.37 -1.83 16 28 C -0.01 -0.03 9.36 -39.58 -0.37 -0.40 16 29 C -0.22 -1.82 5.87 -104.99 -0.62 -2.44 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.19 8.10 -51.92 -0.42 -0.23 16 32 H 0.08 0.17 6.62 -51.93 -0.34 -0.18 16 33 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.41 3.13 8.34 -40.82 -0.34 2.79 16 36 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 37 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 38 H 0.37 3.49 9.05 45.56 0.41 3.90 16 39 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 40 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 41 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 43 H 0.05 0.74 6.37 -51.93 -0.33 0.41 16 44 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 45 H 0.02 0.51 7.36 -51.93 -0.38 0.13 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.13 0.72 6.67 -52.49 -0.35 0.37 16 48 H 0.14 0.46 6.52 -52.49 -0.34 0.11 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -34.23 392.99 -9.47 -43.70 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.05 Total: 1.56 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.95 Total: -6.13 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.70 Total: -42.88 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -1.02 Total: -18.17 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.23 -9.47 -43.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331970604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.177 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds