Wall clock time and date at job start Wed Apr 1 2020 04:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35895 * 120.90128 * 2 1 4 4 C 1.40946 * 119.83621 * 179.97438 * 3 2 1 5 5 O 1.21798 * 119.15714 * 180.02562 * 4 3 2 6 6 O 1.34245 * 121.68706 * 359.96668 * 4 3 2 7 7 C 1.35037 * 121.46015 * 0.05220 * 6 4 3 8 8 C 1.38591 * 120.72402 * 179.97438 * 7 6 4 9 9 C 1.38737 * 119.77481 * 179.97438 * 8 7 6 10 10 N 1.39150 * 119.74975 * 179.97438 * 9 8 7 11 11 C 1.46496 * 120.00061 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47414 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46812 * 59.99599 * 12 11 10 14 14 O 1.42905 * 109.46812 * 300.00001 * 12 11 10 15 15 C 1.52997 * 109.47452 * 179.97438 * 12 11 10 16 16 N 1.46898 * 109.47386 * 184.99670 * 15 12 11 17 17 C 1.46903 * 110.99677 * 66.04504 * 16 15 12 18 18 C 1.46893 * 111.00045 * 189.99830 * 16 15 12 19 19 C 1.50707 * 109.46916 * 170.00080 * 18 16 15 20 20 H 1.07992 * 120.00119 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99842 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00033 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99891 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46950 * 90.00162 * 23 21 19 25 25 H 1.48499 * 109.46880 * 209.99691 * 23 21 19 26 26 H 1.48490 * 109.47119 * 329.99696 * 23 21 19 27 27 C 1.39582 * 120.50043 * 0.25347 * 9 8 7 28 28 C 1.36385 * 120.40732 * 359.45905 * 27 9 8 29 29 C 1.40034 * 119.81629 * 0.55792 * 28 27 9 30 30 H 1.08999 * 109.47789 * 270.03045 * 1 2 3 31 31 H 1.09008 * 109.46819 * 30.02805 * 1 2 3 32 32 H 1.09005 * 109.47092 * 150.02195 * 1 2 3 33 33 H 1.07998 * 120.08635 * 359.94848 * 3 2 1 34 34 H 1.08002 * 120.11609 * 359.97438 * 8 7 6 35 35 H 0.97006 * 120.00262 * 359.97438 * 10 9 8 36 36 H 1.09001 * 109.47459 * 59.99837 * 11 10 9 37 37 H 1.09002 * 109.47021 * 299.99730 * 11 10 9 38 38 H 0.96705 * 113.99788 * 299.99794 * 14 12 11 39 39 H 1.09004 * 109.46881 * 305.00279 * 15 12 11 40 40 H 1.09002 * 109.47196 * 64.99794 * 15 12 11 41 41 H 1.09006 * 109.46710 * 60.00341 * 17 16 15 42 42 H 1.08996 * 109.46817 * 179.97438 * 17 16 15 43 43 H 1.08994 * 109.47022 * 300.00081 * 17 16 15 44 44 H 1.09001 * 109.47660 * 290.00002 * 18 16 15 45 45 H 1.09001 * 109.46937 * 50.00689 * 18 16 15 46 46 H 0.96998 * 120.00663 * 180.02562 * 22 21 19 47 47 H 1.07999 * 119.79659 * 179.74649 * 27 9 8 48 48 H 1.07994 * 120.09276 * 180.23025 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.1661 0.0000 4 6 3.6141 1.1399 0.0005 5 8 4.2272 2.1923 0.0010 6 8 4.2979 -0.0154 0.0017 7 6 3.6656 -1.2086 0.0014 8 6 4.3868 -2.3921 0.0021 9 6 3.7170 -3.6070 0.0023 10 7 4.4417 -4.7950 0.0025 11 6 3.7401 -6.0810 0.0033 12 6 4.7621 -7.2196 0.0027 13 1 5.3879 -7.1466 0.8921 14 8 5.5806 -7.1243 -1.1648 15 6 4.0293 -8.5627 0.0041 16 7 5.0061 -9.6534 0.1242 17 6 5.6754 -9.6190 1.4314 18 6 4.3704 -10.9572 -0.1077 19 6 5.4323 -12.0207 -0.2206 20 1 6.4749 -11.7546 -0.1288 21 6 5.0725 -13.3333 -0.4410 22 7 5.9991 -14.2615 -0.5390 23 14 3.2691 -13.7934 -0.6005 24 1 2.8590 -13.7018 -2.0247 25 1 3.0679 -15.1826 -0.1158 26 1 2.4468 -12.8617 0.2124 27 6 2.3218 -3.6468 -0.0035 28 6 1.5982 -2.4908 0.0016 29 6 2.2587 -1.2560 0.0010 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6811 2.1105 -0.0008 34 1 5.4666 -2.3687 0.0025 35 1 5.4115 -4.7716 0.0021 36 1 3.1146 -6.1542 -0.8864 37 1 3.1154 -6.1535 0.8936 38 1 5.0890 -7.1817 -1.9956 39 1 3.3387 -8.5989 0.8467 40 1 3.4730 -8.6741 -0.9266 41 1 4.9332 -9.7259 2.2225 42 1 6.3928 -10.4372 1.4938 43 1 6.1964 -8.6687 1.5479 44 1 3.7082 -11.1920 0.7257 45 1 3.7931 -10.9208 -1.0315 46 1 5.7461 -15.1849 -0.6944 47 1 1.8121 -4.5990 -0.0074 48 1 0.5189 -2.5275 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331970604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:51 Heat of formation + Delta-G solvation = -95.624552 kcal Electronic energy + Delta-G solvation = -28970.707170 eV Core-core repulsion = 24797.306615 eV Total energy + Delta-G solvation = -4173.400555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.87327 -40.46640 -39.51936 -38.55008 -37.49826 -36.81758 -35.05231 -34.59554 -32.11313 -31.46986 -30.08075 -29.70745 -29.02272 -27.42846 -25.76419 -24.69259 -24.02905 -23.03228 -22.41339 -21.78874 -20.20115 -19.14990 -19.03099 -18.42277 -17.83952 -17.78781 -17.21597 -17.08938 -16.56271 -16.16542 -16.03368 -15.97548 -15.68293 -14.98112 -14.95474 -14.80921 -14.75816 -14.52652 -14.48850 -14.30875 -14.18654 -14.11673 -13.80934 -13.42329 -13.27845 -12.98992 -12.79578 -12.53724 -12.51940 -12.41745 -12.35473 -12.28698 -11.90166 -11.66914 -11.55326 -11.50143 -11.35404 -10.86043 -10.77264 -10.27442 -9.79381 -8.95055 -8.43632 -8.26793 -6.30955 -0.62855 0.12164 0.65831 1.34063 1.36211 1.38382 1.48527 1.86424 2.27515 2.35671 2.78117 3.06333 3.17472 3.26110 3.40980 3.52322 3.61970 3.83400 3.93700 3.98402 4.05656 4.21252 4.22018 4.40440 4.43999 4.49925 4.52358 4.61043 4.66329 4.72840 4.76358 4.77723 4.82881 4.90999 4.93752 5.04767 5.06750 5.08596 5.14565 5.25638 5.34770 5.38858 5.49176 5.54525 5.98499 6.13694 6.17149 6.35579 6.44282 6.55522 6.68116 6.76544 6.94042 7.32822 8.90057 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.001661 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.417211 B =16848.250445 C =17628.132793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.081 3.919 3 C -0.315 4.315 4 C 0.503 3.497 5 O -0.532 6.532 6 O -0.298 6.298 7 C 0.174 3.826 8 C -0.245 4.245 9 C 0.282 3.718 10 N -0.718 5.718 11 C 0.095 3.905 12 C 0.110 3.890 13 H 0.096 0.904 14 O -0.563 6.563 15 C 0.022 3.978 16 N -0.542 5.542 17 C 0.039 3.961 18 C 0.172 3.828 19 C -0.519 4.519 20 H 0.032 0.968 21 C 0.003 3.997 22 N -0.951 5.951 23 Si 0.952 3.048 24 H -0.264 1.264 25 H -0.286 1.286 26 H -0.246 1.246 27 C -0.214 4.214 28 C 0.008 3.992 29 C -0.236 4.236 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.171 0.829 34 H 0.135 0.865 35 H 0.409 0.591 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.385 0.615 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.023 0.977 42 H 0.041 0.959 43 H 0.075 0.925 44 H -0.010 1.010 45 H 0.033 0.967 46 H 0.266 0.734 47 H 0.159 0.841 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.877 26.227 1.914 32.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 C -0.334 4.334 4 C 0.358 3.642 5 O -0.425 6.425 6 O -0.210 6.210 7 C 0.129 3.871 8 C -0.269 4.269 9 C 0.172 3.828 10 N -0.342 5.342 11 C -0.030 4.030 12 C 0.050 3.950 13 H 0.114 0.886 14 O -0.370 6.370 15 C -0.107 4.107 16 N -0.266 5.266 17 C -0.109 4.109 18 C 0.045 3.955 19 C -0.557 4.557 20 H 0.051 0.949 21 C -0.194 4.194 22 N -0.592 5.592 23 Si 0.775 3.225 24 H -0.189 1.189 25 H -0.212 1.212 26 H -0.169 1.169 27 C -0.236 4.236 28 C -0.010 4.010 29 C -0.239 4.239 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.188 0.812 34 H 0.153 0.847 35 H 0.245 0.755 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.008 0.992 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.177 0.823 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.627 26.418 1.968 31.819 hybrid contribution -0.144 -0.713 0.154 0.744 sum -17.770 25.705 2.122 31.321 Atomic orbital electron populations 1.21209 0.85943 1.05977 1.05382 1.21898 0.98628 0.89758 0.81754 1.22173 0.90849 1.01858 1.18527 1.19739 0.89537 0.80465 0.74492 1.90914 1.73309 1.27364 1.50961 1.83458 1.45046 1.14794 1.77673 1.19011 0.90910 0.82153 0.95002 1.19775 1.00665 0.88375 1.18080 1.17731 0.91821 0.85067 0.88201 1.44760 1.09240 1.02414 1.77806 1.22197 0.95149 0.81431 1.04212 1.22022 0.92011 0.91200 0.89733 0.88613 1.86606 1.38305 1.95719 1.16360 1.22841 0.93859 0.91413 1.02559 1.61704 1.30522 1.03179 1.31220 1.22218 0.98404 1.01505 0.88804 1.19945 0.93328 0.86987 0.95221 1.21314 0.93854 0.92089 1.48444 0.94944 1.25942 1.02738 0.96232 0.94521 1.70067 1.35623 1.01963 1.51548 0.85643 0.79464 0.77783 0.79570 1.18868 1.21184 1.16913 1.20831 0.90975 1.00871 1.10896 1.21057 1.01691 0.88470 0.89792 1.19047 0.90717 0.95836 1.18314 0.87288 0.88774 0.87911 0.81180 0.84694 0.75473 0.89231 0.88968 0.76664 0.93064 0.89579 0.95816 0.94009 0.90606 0.99244 0.94936 0.92521 0.82330 0.80524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.24 9.64 71.23 0.69 0.45 16 2 C 0.08 0.92 6.07 -18.29 -0.11 0.81 16 3 C -0.31 -5.43 9.62 22.39 0.22 -5.22 16 4 C 0.50 13.33 7.89 68.48 0.54 13.88 16 5 O -0.53 -18.00 17.91 18.96 0.34 -17.66 16 6 O -0.30 -7.84 9.82 14.33 0.14 -7.70 16 7 C 0.17 3.51 6.76 22.97 0.16 3.67 16 8 C -0.25 -4.34 9.83 22.47 0.22 -4.12 16 9 C 0.28 3.78 6.65 38.42 0.26 4.04 16 10 N -0.72 -8.85 5.60 -339.44 -1.90 -10.75 16 11 C 0.09 0.98 4.55 86.38 0.39 1.38 16 12 C 0.11 1.98 3.01 30.60 0.09 2.07 16 13 H 0.10 1.90 6.33 -2.39 -0.02 1.88 16 14 O -0.56 -12.39 13.03 -148.98 -1.94 -14.33 16 15 C 0.02 0.52 4.60 86.30 0.40 0.92 16 16 N -0.54 -19.80 4.70 -927.05 -4.36 -24.16 16 17 C 0.04 1.36 9.14 127.69 1.17 2.52 16 18 C 0.17 7.60 3.79 85.56 0.32 7.92 16 19 C -0.52 -29.16 9.01 25.60 0.23 -28.93 16 20 H 0.03 2.08 7.37 -2.91 -0.02 2.05 16 21 C 0.00 0.14 5.47 84.66 0.46 0.61 16 22 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 23 Si 0.95 41.94 27.47 68.60 1.88 43.82 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.25 -9.80 6.54 99.48 0.65 -9.15 16 27 C -0.21 -1.93 9.22 22.16 0.20 -1.73 16 28 C 0.01 0.06 9.36 22.27 0.21 0.27 16 29 C -0.24 -3.29 5.87 -20.10 -0.12 -3.41 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.09 0.04 8.10 -2.38 -0.02 0.02 16 32 H 0.10 -0.19 6.62 -2.38 -0.02 -0.21 16 33 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.41 5.59 8.34 -92.70 -0.77 4.82 16 36 H 0.09 0.67 7.91 -2.39 -0.02 0.65 16 37 H 0.09 0.72 7.94 -2.39 -0.02 0.70 16 38 H 0.38 6.28 9.05 -74.05 -0.67 5.61 16 39 H 0.05 1.06 8.12 -2.38 -0.02 1.04 16 40 H 0.09 1.83 7.93 -2.39 -0.02 1.82 16 41 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.04 1.77 6.76 -2.39 -0.02 1.75 16 43 H 0.08 2.19 6.37 -2.39 -0.02 2.18 16 44 H -0.01 -0.44 7.18 -2.39 -0.02 -0.46 16 45 H 0.03 1.38 7.36 -2.39 -0.02 1.36 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.16 0.69 6.67 -2.91 -0.02 0.67 16 48 H 0.18 -0.03 6.52 -2.91 -0.02 -0.05 16 Total: -1.00 -81.11 392.99 -0.70 -81.81 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -0.49 Total: 12.32 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.33 Total: -4.89 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -5.96 Total: -93.38 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.46 Total: -39.69 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.82 kcal Total: -81.11 -0.70 -81.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331970604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.818 kcal (2) G-P(sol) polarization free energy of solvation -81.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds