Wall clock time and date at job start Wed Apr 1 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.45195 * 2 1 4 4 C 1.53041 * 109.46136 * 240.03470 * 2 1 3 5 5 C 1.53187 * 109.31795 * 178.61604 * 4 2 1 6 6 N 1.46917 * 108.77476 * 54.63174 * 5 4 2 7 7 C 1.34781 * 120.63041 * 126.37412 * 6 5 4 8 8 O 1.21360 * 119.99718 * 351.32495 * 7 6 5 9 9 C 1.49350 * 120.00303 * 171.32355 * 7 6 5 10 10 O 1.21375 * 120.00196 * 353.42785 * 9 7 6 11 11 N 1.34774 * 119.99927 * 173.41996 * 9 7 6 12 12 C 1.39729 * 119.99955 * 183.68937 * 11 9 7 13 13 C 1.38923 * 120.07553 * 324.25120 * 12 11 9 14 14 C 1.38104 * 119.92512 * 179.67491 * 13 12 11 15 15 C 1.38302 * 120.06838 * 0.61667 * 14 13 12 16 16 C 1.50704 * 119.91694 * 179.70080 * 15 14 13 17 17 C 1.50702 * 109.46798 * 269.97263 * 16 15 14 18 18 H 1.07995 * 120.00312 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99730 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99595 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47413 * 90.00331 * 21 19 17 23 23 H 1.48501 * 109.47299 * 210.00271 * 21 19 17 24 24 H 1.48497 * 109.47219 * 329.99901 * 21 19 17 25 25 C 1.38283 * 120.15318 * 359.67821 * 15 14 13 26 26 C 1.38093 * 120.08211 * 0.02562 * 25 15 14 27 27 C 1.46927 * 118.74178 * 306.64635 * 6 5 4 28 28 C 1.52761 * 109.00945 * 53.31069 * 27 6 5 29 29 H 1.09005 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46874 * 299.96078 * 1 2 3 31 31 H 1.08993 * 109.47152 * 59.96271 * 1 2 3 32 32 H 0.96707 * 113.99785 * 60.03513 * 3 2 1 33 33 H 1.09002 * 109.49319 * 58.65835 * 4 2 1 34 34 H 1.09004 * 109.52441 * 298.58535 * 4 2 1 35 35 H 1.09007 * 109.57921 * 294.84744 * 5 4 2 36 36 H 1.08994 * 109.70611 * 174.49929 * 5 4 2 37 37 H 0.96996 * 120.00303 * 3.42223 * 11 9 7 38 38 H 1.08005 * 120.04355 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.96927 * 180.29236 * 14 13 12 40 40 H 1.08994 * 109.47427 * 29.97880 * 16 15 14 41 41 H 1.09006 * 109.46708 * 149.97868 * 16 15 14 42 42 H 0.97009 * 119.99641 * 179.97438 * 20 19 17 43 43 H 1.08004 * 119.96247 * 180.02562 * 25 15 14 44 44 H 1.07991 * 120.04339 * 180.02562 * 26 25 15 45 45 H 1.09007 * 109.58794 * 173.14201 * 27 6 5 46 46 H 1.08995 * 109.58828 * 293.56838 * 27 6 5 47 47 H 1.08992 * 109.56902 * 185.55189 * 28 27 6 48 48 H 1.09001 * 109.38440 * 65.50993 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0059 1.3474 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2488 -0.0001 7 6 4.9614 -2.2578 -0.0001 8 8 5.2448 -2.8173 -1.0391 9 6 5.6028 -2.6874 1.2784 10 8 5.4120 -2.0538 2.2959 11 7 6.3934 -3.7786 1.3023 12 6 6.9312 -4.2253 2.5121 13 6 7.3191 -3.3094 3.4819 14 6 7.8440 -3.7545 4.6793 15 6 7.9956 -5.1100 4.9081 16 6 8.5751 -5.5918 6.2132 17 6 10.0728 -5.7017 6.0876 18 1 10.5567 -5.4478 5.1561 19 6 10.8254 -6.1265 7.1620 20 7 10.2360 -6.4363 8.2962 21 14 12.6819 -6.2622 7.0065 22 1 13.3068 -4.9728 7.3964 23 1 13.1758 -7.3414 7.8990 24 1 13.0390 -6.5803 5.6007 25 6 7.6162 -6.0242 3.9425 26 6 7.0849 -5.5863 2.7454 27 6 3.5671 -0.6924 1.2641 28 6 2.0399 -0.7208 1.2501 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5132 0.8904 31 1 -0.3633 0.5144 -0.8896 32 1 1.7208 1.8652 0.7654 33 1 1.6571 -0.2207 -2.1398 34 1 1.6978 -1.7556 -1.2389 35 1 3.9142 0.3410 -1.3674 36 1 3.9436 -1.2829 -2.0987 37 1 6.5859 -4.2562 0.4803 38 1 7.2057 -2.2505 3.3018 39 1 8.1414 -3.0433 5.4356 40 1 8.3277 -4.8836 7.0040 41 1 8.1582 -6.5690 6.4571 42 1 10.7654 -6.7355 9.0519 43 1 7.7355 -7.0821 4.1246 44 1 6.7884 -6.3008 1.9919 45 1 3.9347 -1.2908 2.0978 46 1 3.9097 0.3368 1.3715 47 1 1.6572 -0.2208 2.1398 48 1 1.6974 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336613789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:27 Heat of formation + Delta-G solvation = -84.127871 kcal Electronic energy + Delta-G solvation = -29863.832133 eV Core-core repulsion = 25690.930111 eV Total energy + Delta-G solvation = -4172.902022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.40268 -39.98026 -38.84308 -38.05358 -36.15838 -34.95038 -33.06346 -32.74278 -31.62506 -30.61918 -30.38898 -29.05130 -27.11708 -25.35605 -23.89263 -23.54968 -22.51088 -22.40188 -21.03027 -20.26639 -19.86385 -18.23287 -17.37239 -16.91531 -16.68055 -16.32489 -16.25369 -15.64168 -15.43016 -14.99911 -14.97373 -14.84153 -14.57384 -14.26619 -14.10224 -13.75498 -13.51968 -13.23030 -13.07147 -12.90185 -12.65461 -12.54741 -12.34792 -12.32215 -12.03038 -11.80496 -11.63427 -11.51431 -11.35109 -11.31310 -10.88073 -10.84193 -10.60312 -10.46869 -10.35227 -10.08375 -9.64816 -9.37577 -9.18747 -9.06605 -8.44418 -8.36741 -7.52203 -6.05790 -4.09900 1.05588 1.91617 1.97881 2.15913 2.99997 3.25826 3.29762 3.36129 3.40166 3.72216 4.07030 4.21741 4.27804 4.34267 4.40218 4.50992 4.64058 4.89459 4.95309 5.08228 5.12577 5.21851 5.28205 5.30278 5.36201 5.40699 5.46698 5.49172 5.53258 5.61282 5.64643 5.82064 5.90247 5.94491 5.99946 6.09182 6.12387 6.56876 6.59113 6.75349 6.83006 7.08951 7.12123 7.19433 7.21016 7.46226 7.52548 7.62264 7.81206 7.85756 7.89892 8.29432 8.95381 9.54040 11.03814 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.001904 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.415806 B =14699.066438 C =15105.732783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.127 3.873 3 O -0.557 6.557 4 C -0.118 4.118 5 C 0.112 3.888 6 N -0.579 5.579 7 C 0.512 3.488 8 O -0.524 6.524 9 C 0.504 3.496 10 O -0.496 6.496 11 N -0.631 5.631 12 C 0.091 3.909 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.035 4.035 16 C 0.047 3.953 17 C -0.512 4.512 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.109 4.109 26 C -0.134 4.134 27 C 0.073 3.927 28 C -0.161 4.161 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.377 0.623 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.418 0.582 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.142 0.858 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.821 12.538 -18.057 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.086 3.914 3 O -0.363 6.363 4 C -0.156 4.156 5 C -0.010 4.010 6 N -0.312 5.312 7 C 0.294 3.706 8 O -0.400 6.400 9 C 0.286 3.714 10 O -0.373 6.373 11 N -0.276 5.276 12 C -0.001 4.001 13 C -0.132 4.132 14 C -0.129 4.129 15 C -0.036 4.036 16 C 0.010 3.990 17 C -0.550 4.550 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.128 4.128 26 C -0.154 4.154 27 C -0.048 4.048 28 C -0.200 4.200 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.224 0.776 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.255 0.745 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.143 0.857 44 H 0.135 0.865 45 H 0.158 0.842 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.519 12.441 -18.315 29.517 hybrid contribution 0.711 -0.094 0.097 0.724 sum -18.808 12.348 -18.218 28.950 Atomic orbital electron populations 1.22481 0.95494 1.02877 1.02661 1.21185 0.92472 0.82625 0.95108 1.86544 1.77223 1.22921 1.49587 1.21898 0.95619 1.00637 0.97444 1.21667 0.93582 0.99750 0.85985 1.47903 1.40970 1.33601 1.08732 1.20002 0.80748 0.80712 0.89132 1.90755 1.62311 1.53598 1.33327 1.20138 0.80227 0.81931 0.89085 1.90521 1.59391 1.52596 1.34763 1.43045 1.46262 1.27808 1.10515 1.17525 1.02633 0.93034 0.86875 1.21093 0.98960 0.99253 0.93848 1.21025 0.99310 0.95946 0.96571 1.20791 0.92045 0.92658 0.98072 1.18377 0.95473 0.97062 0.88098 1.21053 0.90807 1.44928 0.98220 0.92419 1.25018 0.98778 0.95301 0.95276 1.69960 1.35666 1.45164 1.02459 0.86528 0.85293 0.77782 0.78058 1.20586 1.21175 1.19805 1.20911 0.99174 1.00087 0.92587 1.20799 1.03293 0.92802 0.98457 1.22708 0.93045 1.01907 0.87111 1.22580 0.96819 1.02133 0.98438 0.91534 0.92101 0.91697 0.77584 0.89784 0.90144 0.90039 0.88784 0.74515 0.85403 0.85850 0.95192 0.95209 0.92826 0.85749 0.86489 0.84158 0.90667 0.90009 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.85 8.81 37.16 0.33 -0.52 16 2 C 0.13 0.78 0.98 -90.58 -0.09 0.69 16 3 O -0.56 -3.61 11.71 -35.23 -0.41 -4.03 16 4 C -0.12 -0.80 5.11 -26.61 -0.14 -0.94 16 5 C 0.11 0.97 6.21 -3.72 -0.02 0.94 16 6 N -0.58 -5.92 2.98 -173.58 -0.52 -6.44 16 7 C 0.51 6.29 7.73 -11.63 -0.09 6.20 16 8 O -0.52 -7.21 15.92 5.49 0.09 -7.12 16 9 C 0.50 6.73 7.57 -11.63 -0.09 6.64 16 10 O -0.50 -7.25 10.69 5.48 0.06 -7.20 16 11 N -0.63 -8.42 5.32 -10.30 -0.05 -8.48 16 12 C 0.09 1.46 6.28 -83.75 -0.53 0.93 16 13 C -0.11 -1.96 8.68 -39.38 -0.34 -2.30 16 14 C -0.11 -2.14 9.69 -39.61 -0.38 -2.53 16 15 C -0.04 -0.75 5.07 -104.58 -0.53 -1.28 16 16 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 17 C -0.51 -14.11 9.09 -34.44 -0.31 -14.42 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 C -0.11 -2.03 9.69 -39.62 -0.38 -2.42 16 26 C -0.13 -2.12 9.97 -39.38 -0.39 -2.52 16 27 C 0.07 0.67 5.71 -3.93 -0.02 0.65 16 28 C -0.16 -1.09 5.07 -26.83 -0.14 -1.23 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.38 1.24 9.04 45.56 0.41 1.65 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.71 7.81 -51.92 -0.41 0.30 16 36 H 0.09 0.86 7.00 -51.93 -0.36 0.50 16 37 H 0.42 4.76 8.30 -40.82 -0.34 4.42 16 38 H 0.13 2.16 6.31 -52.48 -0.33 1.83 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 44 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.14 1.55 4.33 -54.71 -0.24 1.32 16 46 H 0.08 0.68 7.81 -51.93 -0.41 0.27 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -31.80 390.98 -8.88 -40.69 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.28 Total: 5.25 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -3.37 Total: -9.54 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.16 Total: -40.29 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.27 Total: -18.34 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.80 -8.88 -40.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336613789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.443 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds