Wall clock time and date at job start Wed Apr 1 2020 03:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.45195 * 2 1 4 4 C 1.53041 * 109.46136 * 240.03470 * 2 1 3 5 5 C 1.53187 * 109.31795 * 178.61604 * 4 2 1 6 6 N 1.46917 * 108.77476 * 54.63174 * 5 4 2 7 7 C 1.34781 * 120.63041 * 126.37412 * 6 5 4 8 8 O 1.21360 * 119.99718 * 351.32495 * 7 6 5 9 9 C 1.49350 * 120.00303 * 171.32355 * 7 6 5 10 10 O 1.21375 * 120.00196 * 353.42785 * 9 7 6 11 11 N 1.34774 * 119.99927 * 173.41996 * 9 7 6 12 12 C 1.39729 * 119.99955 * 183.68937 * 11 9 7 13 13 C 1.38923 * 120.07553 * 324.25120 * 12 11 9 14 14 C 1.38104 * 119.92512 * 179.67491 * 13 12 11 15 15 C 1.38302 * 120.06838 * 0.61667 * 14 13 12 16 16 C 1.50704 * 119.91694 * 179.70080 * 15 14 13 17 17 C 1.50702 * 109.46798 * 269.97263 * 16 15 14 18 18 H 1.07995 * 120.00312 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99730 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99595 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47413 * 90.00331 * 21 19 17 23 23 H 1.48501 * 109.47299 * 210.00271 * 21 19 17 24 24 H 1.48497 * 109.47219 * 329.99901 * 21 19 17 25 25 C 1.38283 * 120.15318 * 359.67821 * 15 14 13 26 26 C 1.38093 * 120.08211 * 0.02562 * 25 15 14 27 27 C 1.46927 * 118.74178 * 306.64635 * 6 5 4 28 28 C 1.52761 * 109.00945 * 53.31069 * 27 6 5 29 29 H 1.09005 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46874 * 299.96078 * 1 2 3 31 31 H 1.08993 * 109.47152 * 59.96271 * 1 2 3 32 32 H 0.96707 * 113.99785 * 60.03513 * 3 2 1 33 33 H 1.09002 * 109.49319 * 58.65835 * 4 2 1 34 34 H 1.09004 * 109.52441 * 298.58535 * 4 2 1 35 35 H 1.09007 * 109.57921 * 294.84744 * 5 4 2 36 36 H 1.08994 * 109.70611 * 174.49929 * 5 4 2 37 37 H 0.96996 * 120.00303 * 3.42223 * 11 9 7 38 38 H 1.08005 * 120.04355 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.96927 * 180.29236 * 14 13 12 40 40 H 1.08994 * 109.47427 * 29.97880 * 16 15 14 41 41 H 1.09006 * 109.46708 * 149.97868 * 16 15 14 42 42 H 0.97009 * 119.99641 * 179.97438 * 20 19 17 43 43 H 1.08004 * 119.96247 * 180.02562 * 25 15 14 44 44 H 1.07991 * 120.04339 * 180.02562 * 26 25 15 45 45 H 1.09007 * 109.58794 * 173.14201 * 27 6 5 46 46 H 1.08995 * 109.58828 * 293.56838 * 27 6 5 47 47 H 1.08992 * 109.56902 * 185.55189 * 28 27 6 48 48 H 1.09001 * 109.38440 * 65.50993 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0059 1.3474 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2488 -0.0001 7 6 4.9614 -2.2578 -0.0001 8 8 5.2448 -2.8173 -1.0391 9 6 5.6028 -2.6874 1.2784 10 8 5.4120 -2.0538 2.2959 11 7 6.3934 -3.7786 1.3023 12 6 6.9312 -4.2253 2.5121 13 6 7.3191 -3.3094 3.4819 14 6 7.8440 -3.7545 4.6793 15 6 7.9956 -5.1100 4.9081 16 6 8.5751 -5.5918 6.2132 17 6 10.0728 -5.7017 6.0876 18 1 10.5567 -5.4478 5.1561 19 6 10.8254 -6.1265 7.1620 20 7 10.2360 -6.4363 8.2962 21 14 12.6819 -6.2622 7.0065 22 1 13.3068 -4.9728 7.3964 23 1 13.1758 -7.3414 7.8990 24 1 13.0390 -6.5803 5.6007 25 6 7.6162 -6.0242 3.9425 26 6 7.0849 -5.5863 2.7454 27 6 3.5671 -0.6924 1.2641 28 6 2.0399 -0.7208 1.2501 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5132 0.8904 31 1 -0.3633 0.5144 -0.8896 32 1 1.7208 1.8652 0.7654 33 1 1.6571 -0.2207 -2.1398 34 1 1.6978 -1.7556 -1.2389 35 1 3.9142 0.3410 -1.3674 36 1 3.9436 -1.2829 -2.0987 37 1 6.5859 -4.2562 0.4803 38 1 7.2057 -2.2505 3.3018 39 1 8.1414 -3.0433 5.4356 40 1 8.3277 -4.8836 7.0040 41 1 8.1582 -6.5690 6.4571 42 1 10.7654 -6.7355 9.0519 43 1 7.7355 -7.0821 4.1246 44 1 6.7884 -6.3008 1.9919 45 1 3.9347 -1.2908 2.0978 46 1 3.9097 0.3368 1.3715 47 1 1.6572 -0.2208 2.1398 48 1 1.6974 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336613789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:26 Heat of formation + Delta-G solvation = -105.314536 kcal Electronic energy + Delta-G solvation = -29864.750855 eV Core-core repulsion = 25690.930111 eV Total energy + Delta-G solvation = -4173.820745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.40276 -40.92840 -39.78841 -39.23082 -37.04980 -36.13210 -34.98315 -33.32436 -32.33694 -32.23606 -31.81692 -29.70030 -28.71960 -26.51923 -25.01574 -24.53099 -23.90205 -23.49886 -22.06403 -21.50014 -20.72378 -19.19524 -18.50630 -18.46644 -17.88625 -17.42566 -17.08097 -16.84862 -16.57612 -16.08571 -15.99331 -15.76183 -15.59039 -15.33815 -15.22438 -14.70030 -14.56548 -14.47472 -14.30733 -14.19255 -13.88977 -13.59695 -13.29542 -13.19785 -13.08900 -12.90020 -12.82417 -12.61565 -12.49970 -12.41517 -12.24603 -12.21063 -12.02200 -11.65759 -11.50710 -11.38872 -11.12817 -10.98049 -10.59335 -10.24483 -9.86560 -9.78456 -8.99545 -8.18223 -6.31824 -0.04946 0.54162 0.61469 1.13249 1.41219 1.41697 1.53207 1.95386 2.31041 2.40691 2.94499 3.10651 3.11998 3.30028 3.69731 3.72881 3.91205 4.01535 4.02692 4.10884 4.29585 4.32231 4.36749 4.47718 4.54816 4.57040 4.63266 4.64716 4.70778 4.78774 4.91697 4.94546 4.96350 5.05640 5.10926 5.21915 5.26921 5.29032 5.30296 5.35245 5.38866 5.43414 5.57199 5.76184 5.87871 6.05128 6.07301 6.13065 6.22646 6.56753 6.77903 6.80945 6.90668 7.36533 8.90190 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.001904 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.415806 B =14699.066438 C =15105.732783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.130 3.870 3 O -0.570 6.570 4 C -0.117 4.117 5 C 0.111 3.889 6 N -0.572 5.572 7 C 0.513 3.487 8 O -0.541 6.541 9 C 0.505 3.495 10 O -0.509 6.509 11 N -0.626 5.626 12 C 0.107 3.893 13 C -0.114 4.114 14 C -0.118 4.118 15 C -0.067 4.067 16 C 0.056 3.944 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.265 1.265 25 C -0.113 4.113 26 C -0.120 4.120 27 C 0.073 3.927 28 C -0.156 4.156 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.390 0.610 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.430 0.570 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.003 0.997 41 H 0.008 0.992 42 H 0.265 0.735 43 H 0.128 0.872 44 H 0.156 0.844 45 H 0.124 0.876 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.721 13.227 -20.277 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.089 3.911 3 O -0.378 6.378 4 C -0.155 4.155 5 C -0.011 4.011 6 N -0.304 5.304 7 C 0.295 3.705 8 O -0.419 6.419 9 C 0.288 3.712 10 O -0.385 6.385 11 N -0.272 5.272 12 C 0.014 3.986 13 C -0.133 4.133 14 C -0.137 4.137 15 C -0.067 4.067 16 C 0.019 3.981 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.789 3.211 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.132 4.132 26 C -0.140 4.140 27 C -0.048 4.048 28 C -0.195 4.195 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.240 0.760 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.269 0.731 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.021 0.979 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.174 0.826 45 H 0.141 0.859 46 H 0.096 0.904 47 H 0.117 0.883 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.450 13.161 -20.551 31.840 hybrid contribution 0.874 -0.202 0.729 1.156 sum -19.576 12.959 -19.823 30.726 Atomic orbital electron populations 1.22424 0.94163 1.03196 1.03239 1.21138 0.93346 0.82415 0.94175 1.86513 1.77574 1.23085 1.50644 1.21920 0.93981 1.01106 0.98495 1.21780 0.95010 0.99386 0.84877 1.48038 1.39886 1.32632 1.09848 1.19753 0.81168 0.81306 0.88258 1.90751 1.63182 1.54490 1.33490 1.20408 0.79894 0.81477 0.89398 1.90549 1.59654 1.52910 1.35423 1.42978 1.46140 1.28066 1.10032 1.17577 1.00841 0.92964 0.87227 1.21117 0.98845 0.99903 0.93469 1.20962 1.00053 0.95186 0.97491 1.20479 0.95003 0.93947 0.97292 1.18113 0.94882 0.95241 0.89870 1.21381 0.92230 1.44672 0.98175 0.92629 1.25920 1.03797 0.94869 0.94874 1.70082 1.37570 1.46043 1.03250 0.85451 0.79262 0.78000 0.78381 1.19903 1.20525 1.18952 1.20977 0.99245 0.99885 0.93091 1.21052 1.01507 0.93448 0.97962 1.22686 0.94818 1.01378 0.85942 1.22561 0.94788 1.02369 0.99743 0.91341 0.91064 0.91629 0.75983 0.88643 0.90008 0.89959 0.89371 0.73079 0.84799 0.86548 0.97878 0.97376 0.92606 0.85404 0.82595 0.85913 0.90438 0.88307 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 8.81 71.98 0.63 -0.56 16 2 C 0.13 1.29 0.98 -10.77 -0.01 1.28 16 3 O -0.57 -6.07 11.71 -148.98 -1.74 -7.81 16 4 C -0.12 -1.35 5.11 30.67 0.16 -1.19 16 5 C 0.11 1.74 6.21 86.36 0.54 2.28 16 6 N -0.57 -10.89 2.98 -821.45 -2.45 -13.34 16 7 C 0.51 11.91 7.73 87.24 0.67 12.58 16 8 O -0.54 -14.11 15.92 -3.28 -0.05 -14.16 16 9 C 0.51 12.75 7.57 87.24 0.66 13.41 16 10 O -0.51 -14.34 10.69 -3.32 -0.04 -14.38 16 11 N -0.63 -15.39 5.32 -304.84 -1.62 -17.01 16 12 C 0.11 3.23 6.28 38.21 0.24 3.47 16 13 C -0.11 -3.91 8.68 22.40 0.19 -3.72 16 14 C -0.12 -4.72 9.69 22.25 0.22 -4.51 16 15 C -0.07 -2.91 5.07 -19.84 -0.10 -3.01 16 16 C 0.06 2.97 5.10 29.10 0.15 3.12 16 17 C -0.53 -29.87 9.09 25.60 0.23 -29.64 16 18 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 19 C 0.00 0.20 5.46 84.66 0.46 0.66 16 20 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 21 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 C -0.11 -4.19 9.69 22.25 0.22 -3.98 16 26 C -0.12 -3.55 9.97 22.40 0.22 -3.33 16 27 C 0.07 1.23 5.71 86.22 0.49 1.72 16 28 C -0.16 -1.79 5.07 30.53 0.15 -1.63 16 29 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.39 1.60 9.04 -74.05 -0.67 0.93 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.08 1.31 7.81 -2.38 -0.02 1.29 16 36 H 0.09 1.51 7.00 -2.39 -0.02 1.49 16 37 H 0.43 8.68 8.30 -92.71 -0.77 7.91 16 38 H 0.13 4.43 6.31 -2.91 -0.02 4.42 16 39 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 41 H 0.01 0.45 8.08 -2.38 -0.02 0.43 16 42 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 43 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 44 H 0.16 3.41 8.06 -2.92 -0.02 3.39 16 45 H 0.12 2.60 4.33 -46.51 -0.20 2.40 16 46 H 0.08 1.28 7.81 -2.39 -0.02 1.26 16 47 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -69.42 390.98 0.91 -68.51 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.63 Total: 20.52 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 5.13 Total: -13.05 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.78 Total: -85.87 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.83 Total: -36.35 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.42 0.91 -68.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336613789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.807 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds