Wall clock time and date at job start Wed Apr 1 2020 03:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46291 * 2 1 4 4 C 1.36937 * 120.00289 * 299.97750 * 3 2 1 5 5 H 1.08001 * 119.99659 * 359.97438 * 4 3 2 6 6 C 1.38811 * 119.99980 * 180.02562 * 4 3 2 7 7 N 1.31615 * 120.00239 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99732 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47244 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47044 * 119.99672 * 8 6 4 11 11 H 1.48503 * 109.47245 * 239.99469 * 8 6 4 12 12 C 1.53037 * 109.45801 * 119.97735 * 2 1 3 13 13 C 1.53195 * 109.31329 * 181.38012 * 12 2 1 14 14 N 1.46930 * 108.77503 * 305.36920 * 13 12 2 15 15 C 1.34779 * 120.62664 * 233.58465 * 14 13 12 16 16 O 1.21275 * 120.00067 * 184.62524 * 15 14 13 17 17 C 1.50704 * 120.00159 * 4.61882 * 15 14 13 18 18 H 1.09002 * 109.70466 * 47.98477 * 17 15 14 19 19 C 1.53474 * 109.71224 * 287.40153 * 17 15 14 20 20 O 1.43176 * 108.24676 * 180.55871 * 19 17 15 21 21 C 1.36105 * 116.71287 * 46.15074 * 20 19 17 22 22 C 1.38707 * 119.39477 * 162.89896 * 21 20 19 23 23 C 1.38189 * 120.06727 * 179.83505 * 22 21 20 24 24 C 1.38253 * 120.11644 * 359.97438 * 23 22 21 25 25 C 1.38200 * 120.11121 * 0.10275 * 24 23 22 26 26 C 1.38701 * 120.06273 * 359.95784 * 25 24 23 27 27 O 1.36112 * 119.38951 * 179.86222 * 26 25 24 28 28 C 1.46920 * 118.74089 * 53.85652 * 14 13 12 29 29 C 1.53047 * 109.45433 * 240.04167 * 2 1 3 30 30 H 1.09001 * 109.46590 * 300.02481 * 1 2 3 31 31 H 1.09001 * 109.47129 * 60.01918 * 1 2 3 32 32 H 1.08993 * 109.47536 * 180.02562 * 1 2 3 33 33 H 0.97004 * 120.00116 * 119.97202 * 3 2 1 34 34 H 0.97001 * 120.00486 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.50313 * 61.43250 * 12 2 1 36 36 H 1.09003 * 109.52468 * 301.34664 * 12 2 1 37 37 H 1.08995 * 109.59117 * 185.57494 * 13 12 2 38 38 H 1.09003 * 109.69828 * 65.22196 * 13 12 2 39 39 H 1.09001 * 109.71040 * 60.86375 * 19 17 15 40 40 H 1.09004 * 109.70501 * 300.24420 * 19 17 15 41 41 H 1.08004 * 119.96578 * 359.82911 * 22 21 20 42 42 H 1.07999 * 119.94359 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.94903 * 180.02562 * 24 23 22 44 44 H 1.07993 * 119.96794 * 179.97438 * 25 24 23 45 45 H 1.08993 * 109.58901 * 65.92834 * 28 14 13 46 46 H 1.08999 * 109.58630 * 186.35533 * 28 14 13 47 47 H 1.09003 * 109.49873 * 298.56446 * 29 2 1 48 48 H 1.08994 * 109.49837 * 58.66885 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6876 2.2243 -1.0272 5 1 1.0674 1.8707 -1.8376 6 6 2.1506 3.5329 -1.0274 7 7 2.9069 3.9636 -0.0401 8 14 1.7003 4.6827 -2.4291 9 1 0.8474 3.9606 -3.4071 10 1 0.9577 5.8510 -1.8918 11 1 2.9383 5.1503 -3.1030 12 6 2.0398 -0.7210 1.2499 13 6 3.5714 -0.6890 1.2641 14 7 4.0678 -1.2490 -0.0003 15 6 4.9620 -2.2575 -0.0005 16 8 5.4275 -2.6549 -1.0474 17 6 5.3834 -2.8911 1.3003 18 1 4.5023 -3.1231 1.8986 19 6 6.2952 -1.9286 2.0734 20 8 6.6866 -2.5655 3.2945 21 6 7.1036 -3.8579 3.2041 22 6 7.8216 -4.4165 4.2513 23 6 8.2488 -5.7285 4.1756 24 6 7.9616 -6.4882 3.0568 25 6 7.2480 -5.9373 2.0092 26 6 6.8174 -4.6207 2.0783 27 8 6.1181 -4.0912 1.0375 28 6 3.5756 -0.6847 -1.2644 29 6 2.0398 -0.7206 -1.2503 30 1 -0.3632 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 2.5755 1.6987 0.7277 34 1 3.2301 4.8782 -0.0400 35 1 1.6978 -1.7558 1.2380 36 1 1.6573 -0.2216 2.1401 37 1 3.9417 -1.2850 2.0981 38 1 3.9164 0.3397 1.3686 39 1 5.7545 -1.0086 2.2955 40 1 7.1792 -1.7014 1.4776 41 1 8.0470 -3.8253 5.1266 42 1 8.8080 -6.1613 4.9920 43 1 8.2965 -7.5134 3.0007 44 1 7.0253 -6.5327 1.1362 45 1 3.9189 0.3450 -1.3632 46 1 3.9486 -1.2781 -2.0992 47 1 1.6977 -1.7555 -1.2386 48 1 1.6572 -0.2204 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484928924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:18 Heat of formation + Delta-G solvation = -55.095401 kcal Electronic energy + Delta-G solvation = -31450.020764 eV Core-core repulsion = 27278.377684 eV Total energy + Delta-G solvation = -4171.643079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70147 -40.03661 -38.18848 -37.70904 -37.22716 -34.74101 -32.53746 -31.94116 -30.89088 -30.58434 -29.24537 -28.72927 -27.70154 -25.53706 -24.07972 -23.22711 -22.98496 -22.86931 -21.33044 -19.94905 -18.95579 -18.50893 -17.85921 -17.17607 -17.16169 -16.57690 -15.82499 -15.79879 -15.15476 -15.02274 -14.79724 -14.63029 -14.41297 -14.12220 -14.08522 -13.90721 -13.75025 -13.51700 -13.32755 -13.03635 -12.54378 -12.38703 -12.24660 -12.11579 -11.61735 -11.59896 -11.43067 -11.40530 -11.26687 -10.96530 -10.87946 -10.84181 -10.74948 -10.36193 -10.21782 -9.86053 -9.69077 -9.54551 -9.01223 -8.90210 -8.41216 -8.31019 -7.04152 -5.84695 -3.13056 1.04552 1.05952 2.30679 2.53303 2.83707 3.37622 3.38262 3.44806 3.46566 3.49509 3.92699 4.23844 4.35929 4.47948 4.52373 4.72996 4.83048 4.86695 5.00873 5.11122 5.14286 5.15853 5.26068 5.29721 5.47847 5.53075 5.58108 5.58980 5.70304 5.80032 5.88451 5.93204 5.93597 6.10113 6.15952 6.20784 6.26089 6.32766 6.37139 6.41595 6.54781 6.59000 6.68610 6.80087 6.92568 6.97701 7.15961 7.48095 7.65990 8.13001 8.33622 9.45850 10.00595 10.35886 11.37887 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.002588 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.197637 B =10818.102532 C =11057.453310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 N -0.717 5.717 4 C -0.232 4.232 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.932 5.932 8 Si 0.902 3.098 9 H -0.281 1.281 10 H -0.293 1.293 11 H -0.292 1.292 12 C -0.130 4.130 13 C 0.099 3.901 14 N -0.591 5.591 15 C 0.522 3.478 16 O -0.521 6.521 17 C 0.036 3.964 18 H 0.109 0.891 19 C 0.030 3.970 20 O -0.300 6.300 21 C 0.046 3.954 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.112 4.112 26 C 0.054 3.946 27 O -0.279 6.279 28 C 0.123 3.877 29 C -0.134 4.134 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.049 0.951 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 -17.961 9.282 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.106 3.894 3 N -0.359 5.359 4 C -0.363 4.363 5 H 0.089 0.911 6 C -0.207 4.207 7 N -0.581 5.581 8 Si 0.733 3.267 9 H -0.206 1.206 10 H -0.220 1.220 11 H -0.220 1.220 12 C -0.169 4.169 13 C -0.023 4.023 14 N -0.325 5.325 15 C 0.307 3.693 16 O -0.397 6.397 17 C -0.024 4.024 18 H 0.126 0.874 19 C -0.046 4.046 20 O -0.214 6.214 21 C 0.001 3.999 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.134 4.134 25 C -0.131 4.131 26 C 0.009 3.991 27 O -0.193 6.193 28 C 0.002 3.998 29 C -0.174 4.174 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.152 0.848 40 H 0.104 0.896 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.527 -18.016 8.525 20.972 hybrid contribution -0.283 1.082 -0.559 1.250 sum 6.245 -16.934 7.966 19.728 Atomic orbital electron populations 1.22218 0.97429 0.99074 1.02250 1.19534 0.92288 0.86251 0.91324 1.42491 1.60728 1.05707 1.26955 1.19151 1.25422 0.91598 1.00127 0.91075 1.24685 1.00534 0.97372 0.98155 1.69640 1.39373 1.16789 1.32281 0.86203 0.77544 0.81216 0.81730 1.20622 1.21999 1.21967 1.22096 0.94058 1.00799 0.99934 1.21991 0.95770 1.00187 0.84397 1.48042 1.41849 1.33592 1.09019 1.19484 0.80216 0.80516 0.89093 1.90725 1.54170 1.62215 1.32585 1.22953 0.95757 0.86491 0.97237 0.87358 1.23742 0.99672 0.95739 0.85466 1.86353 1.80572 1.22731 1.31720 1.18996 1.00240 0.84448 0.96186 1.20459 0.98392 0.96002 0.98265 1.20917 1.00870 0.93291 0.98655 1.20922 0.99147 1.00225 0.93138 1.20473 1.00684 0.91516 1.00433 1.19044 0.97902 0.93629 0.88521 1.86396 1.61024 1.39003 1.32859 1.21768 0.94478 0.99837 0.83689 1.22403 0.94551 0.99200 1.01294 0.93078 0.92437 0.94552 0.78232 0.93596 0.91670 0.90339 0.90864 0.89307 0.84766 0.89552 0.84707 0.85073 0.85041 0.84660 0.89006 0.90302 0.93256 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.44 37.16 0.31 -2.17 16 2 C 0.20 3.36 0.74 -131.78 -0.10 3.27 16 3 N -0.72 -15.35 4.13 -47.19 -0.19 -15.55 16 4 C -0.23 -5.73 8.68 -15.06 -0.13 -5.86 16 5 H 0.07 1.75 6.70 -52.49 -0.35 1.39 16 6 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 7 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 8 Si 0.90 21.42 29.55 -169.99 -5.02 16.39 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 C -0.13 -1.80 4.96 -26.61 -0.13 -1.93 16 13 C 0.10 1.31 5.03 -3.71 -0.02 1.29 16 14 N -0.59 -8.99 2.97 -172.50 -0.51 -9.50 16 15 C 0.52 8.31 7.06 -10.98 -0.08 8.24 16 16 O -0.52 -10.25 15.98 -13.91 -0.22 -10.47 16 17 C 0.04 0.48 2.55 -27.64 -0.07 0.41 16 18 H 0.11 1.25 7.26 -51.93 -0.38 0.87 16 19 C 0.03 0.35 6.17 37.40 0.23 0.58 16 20 O -0.30 -3.73 10.42 -32.85 -0.34 -4.07 16 21 C 0.05 0.57 6.49 -39.14 -0.25 0.31 16 22 C -0.11 -1.12 9.96 -39.43 -0.39 -1.51 16 23 C -0.12 -0.98 10.04 -39.59 -0.40 -1.37 16 24 C -0.12 -0.98 10.04 -39.59 -0.40 -1.38 16 25 C -0.11 -1.21 9.96 -39.42 -0.39 -1.61 16 26 C 0.05 0.71 6.49 -39.14 -0.25 0.46 16 27 O -0.28 -4.19 9.64 -46.94 -0.45 -4.64 16 28 C 0.12 2.12 6.19 -3.49 -0.02 2.10 16 29 C -0.13 -2.24 4.72 -26.38 -0.12 -2.36 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.04 7.27 -51.93 -0.38 0.66 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.38 8.77 6.47 -40.82 -0.26 8.51 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.76 4.67 -51.93 -0.24 0.52 16 38 H 0.09 1.31 6.95 -51.93 -0.36 0.95 16 39 H 0.13 1.36 6.00 -51.93 -0.31 1.05 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.09 1.82 7.73 -51.93 -0.40 1.42 16 46 H 0.08 1.39 7.03 -51.93 -0.37 1.02 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.08 1.39 7.31 -51.93 -0.38 1.01 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -30.80 376.90 -9.45 -40.25 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.79 Total: 9.30 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.31 Total: -1.93 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.02 Total: -50.50 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.02 Total: -19.18 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.80 -9.45 -40.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484928924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.847 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds