Wall clock time and date at job start Wed Apr 1 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.64301 * 2 1 4 4 N 1.46500 * 109.47110 * 56.85969 * 3 2 1 5 5 C 1.36945 * 120.00256 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99774 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00136 * 179.97438 * 5 4 3 8 8 N 1.31614 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99788 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47346 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47061 * 120.00533 * 9 7 5 12 12 H 1.48504 * 109.46708 * 239.99853 * 9 7 5 13 13 C 1.55156 * 110.72269 * 123.33630 * 2 1 3 14 14 C 1.55128 * 101.48569 * 82.69142 * 13 2 1 15 15 N 1.47429 * 104.71957 * 37.29994 * 14 13 2 16 16 C 1.34773 * 125.64629 * 155.81601 * 15 14 13 17 17 O 1.21284 * 120.00163 * 179.69541 * 16 15 14 18 18 C 1.50702 * 120.00431 * 359.68983 * 16 15 14 19 19 C 1.54416 * 129.01632 * 180.02562 * 18 16 15 20 20 C 1.54414 * 78.89093 * 180.64541 * 19 18 16 21 21 C 1.53006 * 129.00834 * 180.64555 * 20 19 18 22 22 F 1.39897 * 109.47129 * 60.00029 * 21 20 19 23 23 F 1.39900 * 109.46764 * 180.02562 * 21 20 19 24 24 F 1.39895 * 109.46931 * 299.99750 * 21 20 19 25 25 C 1.54883 * 84.49859 * 43.15251 * 20 19 18 26 26 C 1.54888 * 84.49774 * 318.13313 * 20 19 18 27 27 C 1.47016 * 108.70121 * 335.55306 * 15 14 13 28 28 H 1.08997 * 109.47139 * 183.13953 * 1 2 3 29 29 H 1.09002 * 109.47095 * 303.14413 * 1 2 3 30 30 H 1.08997 * 109.47074 * 63.13714 * 1 2 3 31 31 H 1.09000 * 109.47387 * 176.85813 * 3 2 1 32 32 H 1.08999 * 109.47568 * 296.85964 * 3 2 1 33 33 H 0.97005 * 120.00213 * 359.97438 * 4 3 2 34 34 H 0.97004 * 119.99995 * 179.97438 * 8 7 5 35 35 H 1.09000 * 111.00936 * 200.93429 * 13 2 1 36 36 H 1.09000 * 111.00206 * 324.75053 * 13 2 1 37 37 H 1.08997 * 110.50351 * 278.45999 * 14 13 2 38 38 H 1.09002 * 110.34230 * 156.06064 * 14 13 2 39 39 H 1.08996 * 114.93043 * 68.15441 * 19 18 16 40 40 H 1.08999 * 114.98384 * 293.12917 * 19 18 16 41 41 H 1.09006 * 114.97848 * 69.38868 * 25 20 19 42 42 H 1.08990 * 114.98368 * 204.56491 * 25 20 19 43 43 H 1.08994 * 114.98153 * 155.43353 * 26 20 19 44 44 H 1.09000 * 114.97994 * 290.61440 * 26 20 19 45 45 H 1.09000 * 109.88504 * 120.70660 * 27 15 14 46 46 H 1.09004 * 109.87763 * 241.86965 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4317 0.0000 4 7 1.5349 2.1549 1.1565 5 6 1.8811 3.4633 1.3658 6 1 2.5485 3.9618 0.6785 7 6 1.3742 4.1486 2.4614 8 7 0.5613 3.5409 3.2993 9 14 1.8459 5.9334 2.7464 10 1 2.7658 6.3803 1.6698 11 1 0.6234 6.7763 2.7353 12 1 2.5240 6.0622 4.0613 13 6 2.0790 -0.7975 1.2124 14 6 2.0074 -2.2536 0.6823 15 7 2.3715 -2.1518 -0.7427 16 6 2.8849 -3.1452 -1.4951 17 8 3.1430 -2.9494 -2.6638 18 6 3.1383 -4.4994 -0.8842 19 6 3.7134 -5.7714 -1.5443 20 6 3.4574 -6.2722 -0.1063 21 6 3.7227 -7.6545 0.4937 22 9 5.0868 -7.9502 0.3984 23 9 3.3364 -7.6612 1.8383 24 9 2.9870 -8.6160 -0.2072 25 6 2.1184 -5.5048 -0.2368 26 6 4.0334 -4.8976 0.3155 27 6 2.0760 -0.7891 -1.2086 28 1 -0.3633 -1.0261 0.0563 29 1 -0.3633 0.5619 0.8605 30 1 -0.3633 0.4643 -0.9167 31 1 3.1577 1.4100 0.0563 32 1 1.7630 1.9355 -0.9168 33 1 0.9352 1.7073 1.7737 34 1 0.2074 4.0197 4.0651 35 1 3.1061 -0.5098 1.4366 36 1 1.4400 -0.6692 2.0861 37 1 0.9973 -2.6493 0.7883 38 1 2.7207 -2.8852 1.2119 39 1 4.7637 -5.7068 -1.8283 40 1 3.0784 -6.2214 -2.3074 41 1 1.4040 -5.9411 -0.9350 42 1 1.6751 -5.1887 0.7074 43 1 3.7097 -4.5436 1.2942 44 1 5.1000 -4.7692 0.1309 45 1 2.9868 -0.3180 -1.5781 46 1 1.3263 -0.8221 -1.9991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569696062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:50 Heat of formation + Delta-G solvation = -73.732820 kcal Electronic energy + Delta-G solvation = -31052.103074 eV Core-core repulsion = 26337.795075 eV Total energy + Delta-G solvation = -4714.307999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.46025 -48.00326 -47.99773 -42.65881 -39.92405 -37.93161 -34.92103 -32.75879 -30.39799 -29.50865 -28.70708 -27.01490 -26.48560 -26.36545 -25.83058 -24.15506 -22.78273 -22.40320 -20.48643 -19.14666 -18.78586 -18.78138 -18.52624 -17.71263 -17.16455 -16.54507 -16.08649 -15.25249 -15.10368 -15.05293 -14.79763 -14.70513 -14.60090 -14.42503 -14.15499 -14.15013 -14.13893 -14.00438 -13.97221 -13.17820 -13.10073 -12.73189 -12.56160 -12.29207 -12.17282 -12.11813 -12.05217 -11.79870 -11.74020 -11.56559 -11.06794 -10.99112 -10.91918 -10.87335 -10.65311 -10.38682 -10.28769 -10.07743 -9.93935 -9.69606 -8.92199 -8.74140 -6.96305 -5.81507 -3.09521 2.15635 2.18539 2.72793 3.05879 3.08450 3.32826 3.40580 3.47040 3.48685 3.58726 3.80024 3.91150 4.19380 4.19719 4.22692 4.53900 4.62230 4.78145 4.90810 4.95625 5.02446 5.07966 5.22246 5.26736 5.28402 5.32605 5.34805 5.41804 5.47427 5.54885 5.65597 5.80621 5.91731 5.98626 6.02378 6.16208 6.24185 6.33171 6.39802 6.60981 6.70797 6.78358 7.36620 7.67414 7.97105 8.37843 9.49666 10.06103 10.41188 11.41493 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.002136 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.114719 B =13106.109675 C =13670.806583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C 0.168 3.832 4 N -0.728 5.728 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.116 4.116 14 C 0.094 3.906 15 N -0.605 5.605 16 C 0.590 3.410 17 O -0.532 6.532 18 C -0.146 4.146 19 C -0.063 4.063 20 C -0.222 4.222 21 C 0.522 3.478 22 F -0.176 7.176 23 F -0.175 7.175 24 F -0.176 7.176 25 C -0.074 4.074 26 C -0.074 4.074 27 C 0.119 3.881 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -23.887 -5.789 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.078 4.078 3 C 0.040 3.960 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.154 4.154 14 C -0.028 4.028 15 N -0.337 5.337 16 C 0.377 3.623 17 O -0.409 6.409 18 C -0.149 4.149 19 C -0.101 4.101 20 C -0.223 4.223 21 C 0.468 3.532 22 F -0.157 7.157 23 F -0.156 7.156 24 F -0.157 7.157 25 C -0.111 4.111 26 C -0.112 4.112 27 C -0.003 4.003 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.219 0.781 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.265 -23.698 -6.480 24.935 hybrid contribution 0.071 0.532 0.653 0.845 sum 4.336 -23.165 -5.827 24.277 Atomic orbital electron populations 1.21772 0.93213 1.00751 1.03279 1.21806 0.96533 0.96244 0.93261 1.20592 0.95703 0.87837 0.91821 1.42347 1.56971 1.10740 1.27275 1.19267 1.22870 0.87828 1.06921 0.91170 1.24714 1.00076 0.98329 0.97819 1.69654 1.36390 1.36196 1.16011 0.86127 0.77565 0.84988 0.77577 1.20580 1.21887 1.21903 1.22871 1.02937 0.91539 0.98096 1.22619 1.00346 0.99337 0.80531 1.48367 1.61938 1.11578 1.11845 1.17910 0.77189 0.82236 0.84980 1.90739 1.52140 1.82021 1.15966 1.24024 0.99720 0.93104 0.98091 1.23698 1.02777 0.91347 0.92265 1.24916 1.03643 0.91716 1.02069 1.18422 0.74012 0.85034 0.75766 1.93206 1.32310 1.94243 1.95925 1.93212 1.90919 1.96837 1.34660 1.93203 1.77299 1.66331 1.78903 1.24504 0.93088 0.92045 1.01501 1.24083 1.00306 0.89010 0.97752 1.22100 1.00753 0.80440 0.97017 0.93522 0.90726 0.92577 0.96053 0.95988 0.78059 0.93571 0.90126 0.89126 0.91057 0.90734 0.88985 0.88942 0.88910 0.88649 0.88516 0.88941 0.90920 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.27 37.16 0.31 -1.58 16 2 C -0.08 -1.12 0.61 -152.68 -0.09 -1.21 16 3 C 0.17 3.15 5.09 -4.04 -0.02 3.13 16 4 N -0.73 -17.13 5.16 -59.91 -0.31 -17.44 16 5 C -0.24 -6.39 9.99 -15.06 -0.15 -6.54 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 9 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C -0.12 -1.50 5.74 -24.46 -0.14 -1.64 16 14 C 0.09 0.94 6.34 -2.41 -0.02 0.93 16 15 N -0.60 -7.26 3.32 -170.38 -0.57 -7.83 16 16 C 0.59 7.42 7.96 -10.99 -0.09 7.33 16 17 O -0.53 -8.63 17.42 5.55 0.10 -8.53 16 18 C -0.15 -1.31 2.69 -171.00 -0.46 -1.77 16 19 C -0.06 -0.50 7.78 -26.70 -0.21 -0.70 16 20 C -0.22 -1.61 2.89 -171.12 -0.49 -2.11 16 21 C 0.52 4.19 3.63 37.16 0.13 4.33 16 22 F -0.18 -1.53 17.32 2.25 0.04 -1.49 16 23 F -0.17 -1.51 17.32 2.25 0.04 -1.47 16 24 F -0.18 -1.51 17.32 2.25 0.04 -1.47 16 25 C -0.07 -0.51 7.91 -24.72 -0.20 -0.71 16 26 C -0.07 -0.53 7.27 -25.98 -0.19 -0.72 16 27 C 0.12 1.60 6.04 -3.07 -0.02 1.58 16 28 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16 29 H 0.07 1.24 6.69 -51.93 -0.35 0.89 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.38 9.35 6.21 -40.82 -0.25 9.09 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 36 H 0.09 1.22 8.04 -51.93 -0.42 0.80 16 37 H 0.07 0.64 7.67 -51.93 -0.40 0.24 16 38 H 0.07 0.61 5.80 -51.93 -0.30 0.31 16 39 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 40 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 41 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 42 H 0.10 0.56 7.97 -51.93 -0.41 0.15 16 43 H 0.10 0.60 6.59 -51.93 -0.34 0.26 16 44 H 0.09 0.64 7.93 -51.93 -0.41 0.23 16 45 H 0.07 1.03 7.82 -51.93 -0.41 0.63 16 46 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -30.90 381.77 -7.48 -38.38 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.55 Total: 3.78 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.73 Total: -0.16 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.15 Total: -51.68 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.10 Total: -8.53 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.12 Total: -4.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.90 -7.48 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569696062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.352 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds