Wall clock time and date at job start Wed Apr 1 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00218 * 2 1 4 4 C 1.53002 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46762 * 54.99758 * 4 3 2 6 6 O 1.42900 * 109.47227 * 295.00430 * 4 3 2 7 7 C 1.52998 * 109.47311 * 174.99679 * 4 3 2 8 8 N 1.46895 * 109.47147 * 185.00380 * 7 4 3 9 9 C 1.46897 * 111.00267 * 180.02562 * 8 7 4 10 10 C 1.53001 * 109.47404 * 179.97438 * 9 8 7 11 11 C 1.53006 * 110.30496 * 300.69855 * 10 9 8 12 12 C 1.54289 * 110.34643 * 178.52790 * 10 9 8 13 13 C 1.54388 * 104.95942 * 241.02672 * 12 10 9 14 14 N 1.48143 * 104.61930 * 23.85791 * 13 12 10 15 15 C 1.34778 * 127.83816 * 140.41814 * 14 13 12 16 16 O 1.21281 * 120.00351 * 180.02562 * 15 14 13 17 17 C 1.50708 * 119.99916 * 0.03484 * 15 14 13 18 18 S 1.80992 * 109.46940 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99708 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00028 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99825 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00037 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00296 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47195 * 89.99803 * 23 21 19 25 25 H 1.48500 * 109.47162 * 209.99925 * 23 21 19 26 26 H 1.48503 * 109.46882 * 329.99662 * 23 21 19 27 27 C 1.48311 * 104.39357 * 320.47904 * 14 13 12 28 28 H 1.09004 * 109.46523 * 59.99999 * 1 2 3 29 29 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47133 * 300.00807 * 1 2 3 31 31 H 1.09000 * 109.47794 * 59.99580 * 3 2 1 32 32 H 1.09004 * 109.46947 * 299.99453 * 3 2 1 33 33 H 0.96702 * 113.99154 * 299.99651 * 6 4 3 34 34 H 1.08999 * 109.47154 * 65.00679 * 7 4 3 35 35 H 1.09002 * 109.47173 * 305.00139 * 7 4 3 36 36 H 1.00903 * 111.00227 * 56.04477 * 8 7 4 37 37 H 1.09006 * 109.47262 * 59.99839 * 9 8 7 38 38 H 1.08995 * 109.47035 * 299.99610 * 9 8 7 39 39 H 1.09001 * 109.47002 * 59.29738 * 11 10 9 40 40 H 1.08993 * 109.46955 * 179.30175 * 11 10 9 41 41 H 1.09000 * 109.47050 * 299.30004 * 11 10 9 42 42 H 1.09006 * 110.33423 * 359.89256 * 12 10 9 43 43 H 1.08992 * 110.34830 * 122.14990 * 12 10 9 44 44 H 1.08997 * 110.41003 * 142.64991 * 13 12 10 45 45 H 1.09007 * 110.40250 * 264.96136 * 13 12 10 46 46 H 1.09003 * 109.46420 * 299.99536 * 17 15 14 47 47 H 1.08995 * 109.46893 * 59.99267 * 17 15 14 48 48 H 0.97002 * 120.00626 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.38475 * 280.72908 * 27 14 13 50 50 H 1.09001 * 110.50786 * 158.25161 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5680 -0.8410 6 8 3.9649 0.5795 1.2219 7 6 4.1575 2.5767 -0.1252 8 7 5.6162 2.4523 -0.2450 9 6 6.2489 3.7724 -0.3674 10 6 7.7646 3.6023 -0.4892 11 6 8.3182 2.8793 0.7404 12 6 8.4469 4.9760 -0.6560 13 6 9.1526 4.9066 -2.0274 14 7 8.4060 3.8719 -2.7801 15 6 8.0659 3.8824 -4.0843 16 8 7.4481 2.9522 -4.5574 17 6 8.4535 5.0501 -4.9547 18 16 7.8588 4.7691 -6.6409 19 6 8.4326 6.2432 -7.4172 20 1 8.9746 6.9801 -6.8431 21 6 8.1889 6.4568 -8.7668 22 7 8.6179 7.5577 -9.3469 23 14 7.2520 5.1819 -9.7601 24 1 5.7987 5.4816 -9.7048 25 1 7.7117 5.2186 -11.1717 26 1 7.5011 3.8321 -9.1933 27 6 8.1156 2.8217 -1.7741 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.7176 1.0752 2.0145 34 1 3.9145 3.1646 0.7600 35 1 3.7612 3.0731 -1.0110 36 1 5.8659 1.8580 -1.0212 37 1 6.0204 4.3682 0.5163 38 1 5.8672 4.2774 -1.2547 39 1 7.8461 1.9009 0.8298 40 1 9.3957 2.7545 0.6338 41 1 8.1072 3.4676 1.6334 42 1 7.7020 5.7718 -0.6530 43 1 9.1764 5.1357 0.1379 44 1 9.0885 5.8680 -2.5370 45 1 10.1947 4.6115 -1.9039 46 1 8.0071 5.9622 -4.5588 47 1 9.5387 5.1513 -4.9646 48 1 8.4474 7.7073 -10.2900 49 1 8.9945 2.1980 -1.6117 50 1 7.2695 2.2122 -2.0916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699828854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:32 Heat of formation + Delta-G solvation = -157.174035 kcal Electronic energy + Delta-G solvation = -28409.748691 eV Core-core repulsion = 24369.123102 eV Total energy + Delta-G solvation = -4040.625590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.30406 -39.75236 -39.18547 -37.78649 -36.17619 -34.70204 -33.97142 -31.50419 -31.03905 -30.31092 -28.06556 -27.92665 -26.99730 -26.51534 -24.93924 -23.49094 -22.73581 -20.83441 -20.04343 -19.54261 -18.33601 -17.91293 -17.58582 -17.21000 -17.16729 -17.02942 -16.59154 -16.48559 -16.09191 -15.83675 -15.66788 -15.28830 -15.20389 -15.07355 -14.93443 -14.47165 -14.16699 -13.77383 -13.46755 -13.41449 -13.37848 -13.23566 -13.13675 -13.05045 -12.97902 -12.92626 -12.68854 -12.51954 -12.41393 -11.91445 -11.85726 -11.70129 -11.61434 -11.46106 -11.19969 -11.02957 -10.89099 -10.70915 -10.57456 -9.82240 -9.40184 -9.04271 -8.54180 -6.25801 0.92772 1.28517 1.42642 1.48307 1.50631 2.02421 2.22428 2.52181 2.65053 2.83817 3.22714 3.38934 3.53785 3.62884 3.81263 3.83618 3.89959 4.06168 4.07856 4.13391 4.26740 4.30160 4.33054 4.36806 4.38178 4.40558 4.50083 4.51680 4.56688 4.62062 4.70513 4.76659 4.81646 4.83778 4.89485 4.96052 5.02315 5.05496 5.23457 5.31205 5.37627 5.60887 5.68160 5.94698 6.08448 6.15568 6.25129 6.39120 6.90746 6.92068 7.02525 8.58114 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.002415 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.074340 B =11590.476897 C =13826.608823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.030 3.970 4 C 0.118 3.882 5 H 0.081 0.919 6 O -0.558 6.558 7 C 0.036 3.964 8 N -0.678 5.678 9 C 0.077 3.923 10 C -0.062 4.062 11 C -0.119 4.119 12 C -0.117 4.117 13 C 0.090 3.910 14 N -0.621 5.621 15 C 0.551 3.449 16 O -0.567 6.567 17 C -0.101 4.101 18 S -0.176 6.176 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.238 1.238 27 C 0.109 3.891 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.385 0.615 34 H 0.097 0.903 35 H 0.035 0.965 36 H 0.335 0.665 37 H 0.092 0.908 38 H 0.010 0.990 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.278 0.722 49 H 0.083 0.917 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -8.201 28.609 30.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.047 4.047 4 C 0.058 3.942 5 H 0.099 0.901 6 O -0.364 6.364 7 C -0.094 4.094 8 N -0.309 5.309 9 C -0.052 4.052 10 C -0.064 4.064 11 C -0.177 4.177 12 C -0.156 4.156 13 C -0.032 4.032 14 N -0.356 5.356 15 C 0.339 3.661 16 O -0.446 6.446 17 C -0.252 4.252 18 S 0.051 5.949 19 C -0.675 4.675 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.162 1.162 27 C -0.013 4.013 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.233 0.767 34 H 0.115 0.885 35 H 0.053 0.947 36 H 0.153 0.847 37 H 0.110 0.890 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.911 -10.090 27.922 30.998 hybrid contribution -0.306 1.932 -1.268 2.331 sum -9.217 -8.158 26.653 29.358 Atomic orbital electron populations 1.22937 0.79566 1.03763 1.00881 1.87909 1.21354 1.28342 1.95588 1.23313 0.94240 0.85077 1.02118 1.21729 0.90520 0.93520 0.88387 0.90070 1.86627 1.81218 1.52915 1.15648 1.22526 0.88428 0.96376 1.02083 1.60514 1.07799 1.13134 1.49480 1.22001 0.92996 0.90201 1.00044 1.21476 0.94617 0.95729 0.94556 1.21662 1.00219 1.00678 0.95112 1.22670 1.00527 0.96079 0.96300 1.22754 0.96572 0.91641 0.92260 1.48978 1.56068 1.23630 1.06876 1.19605 0.78371 0.86824 0.81261 1.90682 1.42129 1.38409 1.73362 1.23187 1.05625 1.00184 0.96214 1.84728 1.76065 1.29324 1.04796 1.22423 1.41878 1.04848 0.98401 0.91901 1.25544 0.95430 0.97161 0.97771 1.70007 1.45791 1.26465 1.12997 0.85883 0.79827 0.81307 0.79459 1.18660 1.18175 1.16248 1.22648 1.01196 0.90587 0.86867 0.93500 0.88850 0.92677 0.90771 0.92035 0.76657 0.88486 0.94728 0.84663 0.89019 0.97203 0.92125 0.91986 0.91197 0.90432 0.87041 0.89888 0.88934 0.87319 0.87247 0.91302 0.89862 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.92 10.67 -144.34 -1.54 -9.46 16 3 C 0.03 0.42 5.57 71.98 0.40 0.82 16 4 C 0.12 1.94 3.43 30.59 0.10 2.04 16 5 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 6 O -0.56 -9.90 13.25 -144.34 -1.91 -11.81 16 7 C 0.04 0.50 5.32 86.30 0.46 0.96 16 8 N -0.68 -11.25 5.70 -513.90 -2.93 -14.18 16 9 C 0.08 1.20 4.47 86.30 0.39 1.59 16 10 C -0.06 -0.90 0.82 -51.27 -0.04 -0.94 16 11 C -0.12 -1.36 8.08 71.98 0.58 -0.78 16 12 C -0.12 -1.42 6.30 31.50 0.20 -1.22 16 13 C 0.09 1.55 6.92 86.53 0.60 2.15 16 14 N -0.62 -16.17 3.32 -807.53 -2.68 -18.85 16 15 C 0.55 20.20 7.93 87.66 0.70 20.89 16 16 O -0.57 -25.45 16.13 -3.03 -0.05 -25.50 16 17 C -0.10 -3.97 5.14 71.24 0.37 -3.61 16 18 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 19 C -0.53 -30.92 10.04 67.95 0.68 -30.24 16 20 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 21 C 0.05 2.74 5.50 84.86 0.47 3.21 16 22 N -0.91 -55.67 13.97 21.65 0.30 -55.36 16 23 Si 0.91 45.27 27.74 68.60 1.90 47.17 16 24 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 27 C 0.11 2.33 6.01 86.50 0.52 2.85 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 33 H 0.38 3.79 9.05 -74.06 -0.67 3.12 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.33 6.74 6.76 -89.69 -0.61 6.13 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.06 0.87 7.62 -2.39 -0.02 0.85 16 40 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.94 7.71 -2.38 -0.02 0.92 16 43 H 0.11 0.80 7.71 -2.39 -0.02 0.78 16 44 H 0.08 1.46 7.30 -2.39 -0.02 1.45 16 45 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.11 3.94 7.95 -2.39 -0.02 3.92 16 47 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 48 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 49 H 0.08 1.61 7.85 -2.39 -0.02 1.59 16 50 H 0.06 1.54 5.84 -2.39 -0.01 1.53 16 Total: -1.00 -78.19 414.94 -1.67 -79.86 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.38 Total: 18.96 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.67 Total: -0.72 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -5.31 Total: -88.40 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -3.50 Total: -46.77 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -78.19 -1.67 -79.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699828854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.317 kcal (2) G-P(sol) polarization free energy of solvation -78.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds