Wall clock time and date at job start Wed Apr 1 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30870 * 126.20178 * 2 1 4 4 C 1.34568 * 107.28584 * 180.13670 * 3 2 1 5 5 C 1.47831 * 126.01906 * 179.90016 * 4 3 2 6 6 O 1.21566 * 119.99863 * 179.68671 * 5 4 3 7 7 N 1.34780 * 120.00228 * 359.68032 * 5 4 3 8 8 C 1.47024 * 125.64634 * 359.96091 * 7 5 4 9 9 C 1.54327 * 107.27131 * 181.09623 * 8 7 5 10 10 C 1.55159 * 102.94078 * 22.19431 * 9 8 7 11 11 H 1.08993 * 111.03527 * 82.58520 * 10 9 8 12 12 C 1.53001 * 111.00458 * 206.42528 * 10 9 8 13 13 N 1.46490 * 109.47264 * 178.64848 * 12 10 9 14 14 C 1.36935 * 120.00121 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.47421 * 125.65064 * 180.02562 * 7 5 4 23 23 N 1.31558 * 107.95888 * 359.62458 * 4 3 2 24 24 N 1.28862 * 108.70572 * 0.23403 * 23 4 3 25 25 C 1.40094 * 125.76834 * 180.02562 * 24 23 4 26 26 N 1.33634 * 125.60185 * 359.97364 * 25 24 23 27 27 C 1.30792 * 109.79263 * 180.02562 * 26 25 24 28 28 N 1.34428 * 108.20347 * 359.97438 * 27 26 25 29 29 H 0.96996 * 126.78228 * 180.02562 * 28 27 26 30 30 N 1.31153 * 125.59587 * 179.66881 * 25 24 23 31 31 H 1.09004 * 109.46969 * 270.27178 * 1 2 3 32 32 H 1.08992 * 109.47455 * 30.27939 * 1 2 3 33 33 H 1.09001 * 109.46720 * 150.27775 * 1 2 3 34 34 H 1.08994 * 109.88344 * 300.51347 * 8 7 5 35 35 H 1.09003 * 109.88015 * 61.52758 * 8 7 5 36 36 H 1.08997 * 110.71778 * 263.83268 * 9 8 7 37 37 H 1.08997 * 110.72113 * 140.55626 * 9 8 7 38 38 H 1.09003 * 109.46836 * 58.64556 * 12 10 9 39 39 H 1.08999 * 109.47071 * 298.65595 * 12 10 9 40 40 H 0.97000 * 120.00577 * 0.02562 * 13 12 10 41 41 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 42 42 H 1.09007 * 110.36720 * 36.99771 * 22 7 5 43 43 H 1.08999 * 110.36901 * 274.67953 * 22 7 5 44 44 H 1.08011 * 125.89884 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5530 0.6198 -0.0031 5 6 4.7630 1.4691 -0.0063 6 8 5.8653 0.9566 -0.0031 7 7 4.6441 2.8116 -0.0128 8 6 3.3783 3.5597 -0.0181 9 6 3.7336 5.0611 -0.0530 10 6 5.1713 5.0645 -0.6364 11 1 5.1521 5.0024 -1.7244 12 6 5.9478 6.2991 -0.1741 13 7 7.3077 6.2523 -0.7168 14 6 8.1922 7.2590 -0.4355 15 1 7.8875 8.0873 0.1868 16 6 9.4807 7.2149 -0.9502 17 7 9.8519 6.2056 -1.7091 18 14 10.6875 8.5879 -0.5658 19 1 10.5773 9.6478 -1.6002 20 1 10.3751 9.1628 0.7672 21 1 12.0696 8.0447 -0.5592 22 6 5.7615 3.7732 -0.0172 23 7 3.5311 -0.6956 0.0033 24 7 2.3038 -1.0884 0.0052 25 6 1.8704 -2.4206 0.0122 26 7 2.6631 -3.4965 0.0175 27 6 1.9349 -4.5830 0.0227 28 7 0.6403 -4.2210 0.0214 29 1 -0.1282 -4.8127 0.0247 30 7 0.6201 -2.8167 0.0202 31 1 -0.3633 0.0049 1.0277 32 1 -0.3634 0.8874 -0.5181 33 1 -0.3633 -0.8925 -0.5095 34 1 2.7957 3.2960 -0.9007 35 1 2.8093 3.3318 0.8832 36 1 3.7242 5.4829 0.9520 37 1 3.0508 5.6039 -0.7066 38 1 5.9915 6.3141 0.9150 39 1 5.4453 7.1986 -0.5298 40 1 7.5814 5.5085 -1.2761 41 1 9.2253 5.4924 -1.9084 42 1 6.5816 3.3991 -0.6301 43 1 6.1031 3.9624 1.0004 44 1 2.3092 -5.5962 0.0281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714358690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:02 Heat of formation + Delta-G solvation = 190.692308 kcal Electronic energy + Delta-G solvation = -29312.083338 eV Core-core repulsion = 25112.143572 eV Total energy + Delta-G solvation = -4199.939766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.13553 -42.90488 -39.82811 -37.56876 -35.37443 -34.81556 -33.78059 -33.04173 -32.35109 -31.33267 -30.24896 -28.64916 -28.56186 -26.36131 -24.50175 -24.27720 -23.28337 -22.42735 -21.94390 -21.00846 -20.04224 -19.61139 -19.34268 -18.05919 -17.63693 -17.21111 -16.79839 -16.24232 -15.97974 -15.69276 -15.52615 -14.67372 -14.45293 -14.35534 -13.73550 -13.67370 -13.53744 -13.46761 -13.19569 -12.92389 -12.77283 -12.59319 -12.35345 -12.08666 -11.89902 -11.70463 -11.03588 -10.99253 -10.95637 -10.83802 -10.68404 -10.58280 -10.46005 -10.37675 -10.30083 -10.17209 -9.93913 -9.69420 -9.09528 -8.81173 -8.52739 -6.92976 -6.02114 -3.02177 0.23558 0.87285 1.10714 1.66721 2.00877 2.27148 2.71031 3.25342 3.39919 3.54611 3.57357 3.62935 3.72333 3.77074 4.16799 4.35293 4.70396 4.77126 4.77376 4.89941 4.99283 5.02057 5.09143 5.11032 5.30469 5.44820 5.53411 5.60832 5.70289 5.79008 5.87147 5.92276 5.97687 6.01143 6.10816 6.12678 6.13679 6.27747 6.32655 6.45630 6.68657 6.82509 6.97922 7.45280 7.63669 7.88321 8.12374 8.84058 9.30906 10.17255 10.31774 11.46478 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.001924 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.439821 B =14552.565076 C =15464.208530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.246 3.754 3 N -0.465 5.465 4 C 0.173 3.827 5 C 0.624 3.376 6 O -0.509 6.509 7 N -0.598 5.598 8 C 0.112 3.888 9 C -0.126 4.126 10 C -0.107 4.107 11 H 0.084 0.916 12 C 0.171 3.829 13 N -0.745 5.745 14 C -0.333 4.333 15 H 0.065 0.935 16 C -0.046 4.046 17 N -0.943 5.943 18 Si 1.084 2.916 19 H -0.296 1.296 20 H -0.295 1.295 21 H -0.288 1.288 22 C 0.119 3.881 23 N -0.224 5.224 24 N -0.232 5.232 25 C 0.461 3.539 26 N -0.518 5.518 27 C 0.295 3.705 28 N -0.467 5.467 29 H 0.453 0.547 30 N -0.295 5.295 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.367 0.633 41 H 0.256 0.744 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.264 -22.674 4.301 37.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.029 4.029 3 N -0.191 5.191 4 C -0.109 4.109 5 C 0.407 3.593 6 O -0.381 6.381 7 N -0.332 5.332 8 C -0.011 4.011 9 C -0.165 4.165 10 C -0.127 4.127 11 H 0.103 0.897 12 C 0.043 3.957 13 N -0.391 5.391 14 C -0.464 4.464 15 H 0.083 0.917 16 C -0.244 4.244 17 N -0.589 5.589 18 Si 0.915 3.085 19 H -0.224 1.224 20 H -0.222 1.222 21 H -0.214 1.214 22 C -0.002 4.002 23 N -0.059 5.059 24 N -0.025 5.025 25 C 0.092 3.908 26 N -0.247 5.247 27 C -0.005 4.005 28 N -0.187 5.187 29 H 0.301 0.699 30 N -0.131 5.131 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.201 0.799 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -26.809 -21.780 4.219 34.798 hybrid contribution -2.182 -1.618 0.112 2.719 sum -28.992 -23.398 4.330 37.506 Atomic orbital electron populations 1.20522 0.82182 1.05606 1.05033 1.25373 0.97909 0.80515 0.99143 1.71565 1.00383 1.26379 1.20767 1.23971 0.93006 0.88402 1.05499 1.15717 0.84879 0.80385 0.78365 1.90891 1.25222 1.72588 1.49406 1.48190 1.09925 1.03677 1.71385 1.22118 0.85348 0.90883 1.02764 1.22702 0.96803 0.94645 1.02314 1.22616 0.94396 0.94988 1.00690 0.89726 1.20524 0.85888 0.93063 0.96220 1.42386 1.08589 1.26840 1.61236 1.20041 0.94852 1.01687 1.29795 0.91712 1.25786 0.96708 1.03339 0.98548 1.70839 1.37674 1.11036 1.39329 0.83186 0.76015 0.74249 0.75078 1.22383 1.22187 1.21411 1.22407 0.88755 0.86953 1.02111 1.74745 0.99012 1.13582 1.18520 1.43145 1.04593 1.02640 1.52126 1.19362 0.87267 0.83807 1.00396 1.70379 1.33959 0.95836 1.24519 1.26317 0.80296 1.00169 0.93669 1.48039 1.09768 1.04228 1.56710 0.69901 1.78221 1.15738 0.89982 1.29174 0.88714 0.87925 0.88547 0.90742 0.90783 0.90298 0.89881 0.95857 0.95648 0.79931 0.93277 0.89767 0.90482 0.74339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 9.84 36.01 0.35 -0.10 16 2 C 0.25 2.75 7.94 -155.25 -1.23 1.52 16 3 N -0.46 -6.22 8.85 -8.47 -0.08 -6.29 16 4 C 0.17 2.84 7.80 -156.31 -1.22 1.62 16 5 C 0.62 11.51 7.86 -12.33 -0.10 11.41 16 6 O -0.51 -11.21 17.34 5.31 0.09 -11.11 16 7 N -0.60 -9.81 3.33 -171.64 -0.57 -10.39 16 8 C 0.11 1.44 5.53 -3.06 -0.02 1.42 16 9 C -0.13 -1.57 6.42 -24.89 -0.16 -1.73 16 10 C -0.11 -1.76 3.10 -88.48 -0.27 -2.03 16 11 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 12 C 0.17 3.45 5.71 -4.05 -0.02 3.42 16 13 N -0.74 -19.21 5.45 -59.91 -0.33 -19.53 16 14 C -0.33 -9.65 9.99 -15.06 -0.15 -9.80 16 15 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 17 N -0.94 -30.22 13.70 55.49 0.76 -29.46 16 18 Si 1.08 26.76 29.92 -169.99 -5.09 21.68 16 19 H -0.30 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 C 0.12 2.11 6.08 -2.54 -0.02 2.10 16 23 N -0.22 -3.74 12.03 32.08 0.39 -3.35 16 24 N -0.23 -3.06 3.52 -10.92 -0.04 -3.10 16 25 C 0.46 4.96 8.74 -320.53 -2.80 2.16 16 26 N -0.52 -5.16 11.20 -14.87 -0.17 -5.33 16 27 C 0.29 1.02 13.12 -90.69 -1.19 -0.17 16 28 N -0.47 -1.19 7.44 29.52 0.22 -0.97 16 29 H 0.45 -0.87 8.96 -182.34 -1.63 -2.50 16 30 N -0.30 -2.10 10.41 30.08 0.31 -1.79 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.53 6.33 -51.93 -0.33 0.20 16 34 H 0.07 0.92 7.64 -51.93 -0.40 0.52 16 35 H 0.07 0.89 7.73 -51.93 -0.40 0.49 16 36 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.37 9.77 6.37 -40.82 -0.26 9.51 16 41 H 0.26 8.11 6.77 -40.82 -0.28 7.84 16 42 H 0.08 1.68 8.04 -51.93 -0.42 1.27 16 43 H 0.08 1.41 8.00 -51.93 -0.42 1.00 16 44 H 0.24 -0.53 8.06 -52.48 -0.42 -0.96 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -42.10 374.70 -12.48 -54.58 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.71 Total: 1.07 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -6.92 Total: 8.34 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: 0.50 Total: -80.21 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -5.09 Total: 21.68 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -42.10 -12.48 -54.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714358690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.273 kcal (2) G-P(sol) polarization free energy of solvation -42.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds