Wall clock time and date at job start Wed Apr 1 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00163 * 2 1 4 4 C 1.53001 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47282 * 55.00531 * 4 3 2 6 6 O 1.42900 * 109.47669 * 294.99949 * 4 3 2 7 7 C 1.53008 * 109.47065 * 175.00029 * 4 3 2 8 8 N 1.46894 * 109.47122 * 182.66970 * 7 4 3 9 9 C 1.46853 * 111.00085 * 75.79416 * 8 7 4 10 10 C 1.53032 * 109.52145 * 185.83687 * 9 8 7 11 11 C 1.53121 * 109.28252 * 300.81789 * 10 9 8 12 12 C 1.52994 * 109.52323 * 177.56051 * 11 10 9 13 13 N 1.46493 * 109.52351 * 297.68995 * 11 10 9 14 14 C 1.34777 * 119.99938 * 179.87038 * 13 11 10 15 15 O 1.21273 * 120.00425 * 359.97438 * 14 13 11 16 16 C 1.50707 * 119.99812 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.46855 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99760 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00132 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99797 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00306 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99838 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46945 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46988 * 119.99970 * 22 20 18 25 25 H 1.48495 * 109.46964 * 239.99832 * 22 20 18 26 26 C 1.53123 * 109.15502 * 57.65659 * 11 10 9 27 27 C 1.46850 * 110.99836 * 200.00152 * 8 7 4 28 28 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47099 * 300.00213 * 1 2 3 30 30 H 1.09004 * 109.46692 * 59.99884 * 1 2 3 31 31 H 1.08998 * 109.46993 * 60.00345 * 3 2 1 32 32 H 1.08999 * 109.47047 * 299.99946 * 3 2 1 33 33 H 0.96695 * 113.99834 * 300.00890 * 6 4 3 34 34 H 1.08998 * 109.47119 * 62.66869 * 7 4 3 35 35 H 1.08999 * 109.46906 * 302.67246 * 7 4 3 36 36 H 1.09000 * 109.45863 * 65.82378 * 9 8 7 37 37 H 1.08998 * 109.46264 * 305.85530 * 9 8 7 38 38 H 1.09005 * 109.50030 * 180.87971 * 10 9 8 39 39 H 1.08994 * 109.53816 * 60.78387 * 10 9 8 40 40 H 1.09000 * 109.47461 * 60.00680 * 12 11 10 41 41 H 1.09003 * 109.46888 * 180.02562 * 12 11 10 42 42 H 1.08998 * 109.47269 * 299.99827 * 12 11 10 43 43 H 0.97001 * 120.00388 * 359.87241 * 13 11 10 44 44 H 1.09001 * 109.46616 * 299.99674 * 16 14 13 45 45 H 1.08995 * 109.47195 * 59.99667 * 16 14 13 46 46 H 0.96994 * 120.00424 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.50373 * 62.29015 * 26 11 10 48 48 H 1.09002 * 109.50149 * 182.40376 * 26 11 10 49 49 H 1.09000 * 109.46156 * 294.17691 * 27 8 7 50 50 H 1.08996 * 109.46339 * 54.15717 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8515 0.5681 -0.8410 6 8 3.9650 0.5795 1.2219 7 6 4.1575 2.5768 -0.1251 8 7 5.6201 2.4558 -0.1888 9 6 6.0523 1.9874 -1.5118 10 6 7.5615 1.7344 -1.4968 11 6 8.2881 3.0318 -1.1317 12 6 9.7936 2.7706 -1.0555 13 7 8.0184 4.0478 -2.1520 14 6 8.5561 5.2782 -2.0364 15 8 9.2628 5.5445 -1.0875 16 6 8.2782 6.3236 -3.0858 17 16 9.1341 7.8579 -2.6504 18 6 8.6499 8.8736 -4.0063 19 1 8.0067 8.4751 -4.7769 20 6 9.0951 10.1860 -4.0840 21 7 9.8794 10.6716 -3.1450 22 14 8.5811 11.2631 -5.5211 23 1 7.7046 10.4858 -6.4336 24 1 7.8421 12.4468 -5.0131 25 1 9.7886 11.7128 -6.2593 26 6 7.7847 3.5240 0.2281 27 6 6.2690 3.7252 0.1632 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.7176 1.0751 2.0146 34 1 3.8801 3.1782 0.7406 35 1 3.7927 3.0570 -1.0330 36 1 5.8185 2.7453 -2.2595 37 1 5.5313 1.0621 -1.7575 38 1 7.8845 1.4017 -2.4833 39 1 7.7950 0.9665 -0.7594 40 1 10.1501 2.4150 -2.0223 41 1 10.3099 3.6946 -0.7951 42 1 9.9935 2.0163 -0.2946 43 1 7.4528 3.8350 -2.9108 44 1 8.6342 5.9704 -4.0535 45 1 7.2054 6.5089 -3.1388 46 1 10.1902 11.5888 -3.1990 47 1 8.0212 2.7845 0.9932 48 1 8.2672 4.4700 0.4741 49 1 6.0342 4.4748 -0.5925 50 1 5.9056 4.0619 1.1340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716791800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:22 Heat of formation + Delta-G solvation = -130.538883 kcal Electronic energy + Delta-G solvation = -28960.708954 eV Core-core repulsion = 24921.238351 eV Total energy + Delta-G solvation = -4039.470603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.54711 -39.09036 -38.05773 -36.77886 -35.00989 -32.45212 -32.22081 -31.13460 -30.89579 -28.78532 -28.31550 -26.80590 -25.50249 -24.70734 -23.62705 -22.24759 -21.55482 -20.77704 -18.98605 -17.90865 -17.41648 -16.89135 -16.53267 -16.42657 -16.03724 -15.56968 -15.30286 -15.07645 -15.00362 -14.82634 -14.49132 -14.27931 -14.06825 -13.81436 -13.64608 -13.23571 -12.90035 -12.73021 -12.62312 -12.50233 -12.29100 -12.18387 -12.02966 -11.84593 -11.74544 -11.47225 -11.19348 -11.16126 -11.09072 -11.03453 -10.77831 -10.67905 -10.46270 -10.24338 -10.13622 -9.81829 -9.12640 -9.09773 -8.86837 -8.43503 -8.24753 -6.51393 -6.24011 -3.94104 3.02795 3.06936 3.11560 3.19296 3.26487 3.31342 3.69855 3.78313 4.15650 4.18341 4.42630 4.53408 4.64905 4.64980 4.69943 4.82377 4.86580 4.91088 4.97089 4.99677 5.07263 5.11196 5.13199 5.21705 5.23547 5.24882 5.34769 5.43641 5.57597 5.62180 5.66129 5.67615 5.80358 5.86863 5.87289 5.90109 6.01351 6.07314 6.12260 6.31822 6.44318 6.64164 6.78084 6.84727 6.89967 7.45790 7.57659 7.77932 8.33161 8.66324 9.21572 10.83399 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013830 B = 0.002206 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.055700 B =12690.884363 C =14064.833523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.028 3.972 4 C 0.118 3.882 5 H 0.104 0.896 6 O -0.538 6.538 7 C 0.024 3.976 8 N -0.524 5.524 9 C 0.054 3.946 10 C -0.116 4.116 11 C 0.178 3.822 12 C -0.163 4.163 13 N -0.732 5.732 14 C 0.535 3.465 15 O -0.512 6.512 16 C -0.155 4.155 17 S -0.058 6.058 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.126 4.126 27 C 0.060 3.940 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.369 0.631 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.394 0.606 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.268 0.732 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.036 0.964 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.497 -21.498 5.463 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.050 4.050 4 C 0.058 3.942 5 H 0.122 0.878 6 O -0.342 6.342 7 C -0.104 4.104 8 N -0.249 5.249 9 C -0.074 4.074 10 C -0.154 4.154 11 C 0.092 3.908 12 C -0.221 4.221 13 N -0.386 5.386 14 C 0.321 3.679 15 O -0.387 6.387 16 C -0.305 4.305 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.164 4.164 27 C -0.067 4.067 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.216 0.784 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.227 0.773 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.054 0.946 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.705 -21.860 7.051 26.747 hybrid contribution -2.285 1.679 -2.778 3.970 sum -15.990 -20.181 4.273 26.100 Atomic orbital electron populations 1.22778 0.81060 1.02913 0.99937 1.87955 1.19554 1.27080 1.95357 1.23310 0.95323 0.85470 1.00900 1.21838 0.89184 0.93880 0.89316 0.87830 1.86659 1.80917 1.51865 1.14735 1.22701 0.89179 0.96677 1.01872 1.61821 1.04745 1.29966 1.28350 1.22137 0.96184 0.99822 0.89268 1.21876 0.93844 0.97060 1.02650 1.20283 0.95208 0.87053 0.88244 1.22199 0.94942 1.03427 1.01565 1.46214 1.53405 1.12111 1.26896 1.20199 0.78961 0.81992 0.86728 1.90629 1.36344 1.79451 1.32255 1.23552 1.05345 1.01264 1.00378 1.85365 1.63851 1.00054 1.33877 1.22908 1.36128 0.99234 1.10089 0.90985 1.24992 0.94679 0.97019 0.96919 1.70021 1.31872 1.15833 1.32520 0.86128 0.78452 0.79812 0.81169 1.19664 1.20563 1.20545 1.22014 0.94143 1.03855 0.96435 1.22077 0.95090 0.89135 1.00418 0.89474 0.94070 0.94104 0.92914 0.92517 0.78429 0.90310 0.93598 0.94847 0.90610 0.90920 0.89414 0.92831 0.89892 0.92111 0.77257 0.89457 0.89661 0.92233 0.90614 0.88769 0.94558 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.44 10.67 -40.08 -0.43 -3.87 16 3 C 0.03 0.19 5.57 37.16 0.21 0.40 16 4 C 0.12 0.93 3.32 -26.73 -0.09 0.85 16 5 H 0.10 0.92 6.76 -51.92 -0.35 0.57 16 6 O -0.54 -5.10 13.22 -40.08 -0.53 -5.63 16 7 C 0.02 0.19 4.65 -3.82 -0.02 0.17 16 8 N -0.52 -4.98 4.50 -234.67 -1.06 -6.04 16 9 C 0.05 0.47 5.13 -3.83 -0.02 0.46 16 10 C -0.12 -1.06 4.92 -26.65 -0.13 -1.20 16 11 C 0.18 2.09 0.66 -131.70 -0.09 2.00 16 12 C -0.16 -2.05 8.41 37.15 0.31 -1.73 16 13 N -0.73 -9.51 4.17 -47.50 -0.20 -9.71 16 14 C 0.53 9.51 7.27 -10.98 -0.08 9.43 16 15 O -0.51 -10.79 12.08 5.56 0.07 -10.73 16 16 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.13 -1.57 4.71 -26.65 -0.13 -1.69 16 27 C 0.06 0.67 5.28 -3.83 -0.02 0.65 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.37 2.30 9.04 45.56 0.41 2.71 16 34 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 35 H 0.05 0.34 8.00 -51.93 -0.42 -0.07 16 36 H 0.03 0.30 7.02 -51.93 -0.36 -0.07 16 37 H 0.08 0.61 6.68 -51.93 -0.35 0.27 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.31 6.17 -51.93 -0.32 0.99 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.39 4.22 7.48 -40.82 -0.31 3.91 16 44 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 45 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.09 1.47 6.13 -51.93 -0.32 1.15 16 49 H 0.04 0.46 7.69 -51.93 -0.40 0.06 16 50 H 0.07 0.78 7.93 -51.93 -0.41 0.37 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -34.67 405.90 -8.89 -43.56 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.84 Total: 4.13 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 1.48 Total: -5.10 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.52 Total: -41.01 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.89 Total: -20.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.67 -8.89 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716791800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.977 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds