Wall clock time and date at job start Wed Apr 1 2020 05:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47034 * 2 1 4 4 O 1.33804 * 125.07076 * 269.95459 * 3 2 1 5 5 C 1.34910 * 111.34709 * 180.02562 * 4 3 2 6 6 C 1.38964 * 133.11834 * 179.97438 * 5 4 3 7 7 C 1.37844 * 119.97369 * 180.02562 * 6 5 4 8 8 C 1.38685 * 120.65602 * 0.02562 * 7 6 5 9 9 C 1.37836 * 120.20186 * 0.02562 * 8 7 6 10 10 C 1.39113 * 119.62465 * 359.97438 * 9 8 7 11 11 C 1.36047 * 125.07623 * 89.99825 * 3 2 1 12 12 C 1.47084 * 127.13780 * 359.97438 * 11 3 2 13 13 O 1.21655 * 120.00073 * 269.99537 * 12 11 3 14 14 N 1.34777 * 120.00209 * 89.99536 * 12 11 3 15 15 C 1.46504 * 120.00020 * 0.02562 * 14 12 11 16 16 C 1.46506 * 120.00028 * 179.97438 * 14 12 11 17 17 C 1.52999 * 109.46779 * 90.00395 * 16 14 12 18 18 H 1.08994 * 109.47356 * 59.99871 * 17 16 14 19 19 O 1.42909 * 109.47137 * 299.99866 * 17 16 14 20 20 C 1.52999 * 109.47252 * 180.02562 * 17 16 14 21 21 N 1.46498 * 109.47413 * 185.00108 * 20 17 16 22 22 C 1.36929 * 120.00079 * 179.97438 * 21 20 17 23 23 H 1.07999 * 119.99987 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99997 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00047 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99825 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47604 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47118 * 120.00215 * 26 24 22 29 29 H 1.48505 * 109.47258 * 239.99905 * 26 24 22 30 30 H 1.09007 * 109.47208 * 60.00174 * 1 2 3 31 31 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47281 * 300.00439 * 1 2 3 33 33 H 1.08994 * 109.46842 * 239.99716 * 2 1 3 34 34 H 1.09002 * 109.46767 * 119.99668 * 2 1 3 35 35 H 1.08005 * 120.01545 * 0.02562 * 6 5 4 36 36 H 1.08009 * 119.67009 * 180.27566 * 7 6 5 37 37 H 1.07996 * 119.89836 * 179.97438 * 8 7 6 38 38 H 1.08001 * 120.18909 * 179.97438 * 9 8 7 39 39 H 1.09003 * 109.46701 * 89.99906 * 15 14 12 40 40 H 1.08996 * 109.46645 * 210.00091 * 15 14 12 41 41 H 1.08993 * 109.46600 * 329.99807 * 15 14 12 42 42 H 1.08997 * 109.47130 * 210.00004 * 16 14 12 43 43 H 1.09002 * 109.47134 * 330.00503 * 16 14 12 44 44 H 0.96694 * 113.99928 * 300.00183 * 19 17 16 45 45 H 1.09008 * 109.46745 * 304.99635 * 20 17 16 46 46 H 1.08996 * 109.47366 * 64.99104 * 20 17 16 47 47 H 0.97004 * 119.99902 * 359.97438 * 21 20 17 48 48 H 0.96996 * 119.99903 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2894 2.1454 -1.0951 5 6 2.7265 3.3810 -0.7751 6 6 3.1155 4.4774 -1.5351 7 6 3.5259 5.6365 -0.9121 8 6 3.5562 5.7230 0.4717 9 6 3.1751 4.6455 1.2422 10 6 2.7592 3.4708 0.6240 11 6 2.2929 2.1580 1.1134 12 6 2.1426 1.7346 2.5139 13 8 1.0873 1.9111 3.0929 14 7 3.1740 1.1510 3.1560 15 6 4.4451 0.9390 2.4590 16 6 3.0244 0.7298 4.5512 17 6 2.5138 -0.7117 4.5967 18 1 3.2264 -1.3656 4.0941 19 8 1.2484 -0.7899 3.9372 20 6 2.3570 -1.1515 6.0537 21 7 1.9832 -2.5673 6.0990 22 6 1.7871 -3.1854 7.3050 23 1 1.9083 -2.6293 8.2228 24 6 1.4324 -4.5268 7.3478 25 7 1.2851 -5.2047 6.2293 26 14 1.1656 -5.3702 8.9931 27 1 1.3918 -4.3963 10.0911 28 1 -0.2260 -5.8834 9.0663 29 1 2.1181 -6.5012 9.1299 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0964 4.4213 -2.6135 36 1 3.8229 6.4872 -1.5077 37 1 3.8802 6.6370 0.9470 38 1 3.1991 4.7129 2.3199 39 1 5.0865 1.8089 2.6005 40 1 4.9377 0.0546 2.8630 41 1 4.2565 0.7957 1.3951 42 1 3.9896 0.7894 5.0541 43 1 2.3117 1.3838 5.0537 44 1 0.5641 -0.2322 4.3318 45 1 3.3006 -1.0079 6.5801 46 1 1.5799 -0.5550 6.5316 47 1 1.8747 -3.0669 5.2746 48 1 1.0376 -6.1421 6.2593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717932678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:22 Heat of formation + Delta-G solvation = -66.512717 kcal Electronic energy + Delta-G solvation = -30764.716937 eV Core-core repulsion = 26592.578766 eV Total energy + Delta-G solvation = -4172.138171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.70473 -40.91045 -38.93037 -38.65290 -36.43988 -35.87042 -35.33241 -33.43957 -33.17140 -31.46667 -30.96295 -29.71999 -28.03964 -27.15189 -25.52265 -24.87083 -23.88393 -23.38959 -22.53349 -22.12896 -20.27183 -19.23556 -18.80528 -18.11354 -18.01396 -17.39712 -17.23458 -16.69797 -16.55584 -16.54715 -16.23001 -16.00318 -15.35693 -15.23170 -15.12598 -14.92276 -14.78009 -14.35632 -14.27662 -14.05290 -13.94198 -13.69921 -13.56483 -13.33364 -13.15820 -12.96540 -12.92118 -12.82120 -12.68483 -12.56686 -12.17797 -12.14322 -12.02571 -11.90643 -11.82796 -11.34044 -11.11418 -10.99280 -10.93145 -9.66977 -9.65396 -9.19244 -9.01316 -7.95134 -5.24668 -0.20221 0.29857 0.97303 1.38404 1.46402 1.47134 1.47908 1.57824 1.97863 2.55238 2.68809 3.20989 3.33593 3.37952 3.52794 3.73130 3.81289 3.92468 4.00185 4.04116 4.11203 4.13563 4.16130 4.25333 4.27186 4.35657 4.45876 4.46762 4.50709 4.54833 4.59559 4.72485 4.80311 4.82683 4.88171 4.92106 4.93092 5.06675 5.20563 5.21807 5.24333 5.34285 5.40260 5.45742 5.47994 5.64167 6.05714 6.24451 6.25941 6.78333 7.04817 7.32478 8.08482 8.31529 9.28466 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002344 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.913467 B =11943.251185 C =12693.978565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C 0.090 3.910 4 O -0.188 6.188 5 C 0.028 3.972 6 C -0.105 4.105 7 C -0.087 4.087 8 C -0.121 4.121 9 C -0.093 4.093 10 C -0.119 4.119 11 C -0.238 4.238 12 C 0.599 3.401 13 O -0.564 6.564 14 N -0.596 5.596 15 C 0.077 3.923 16 C 0.094 3.906 17 C 0.098 3.902 18 H 0.093 0.907 19 O -0.563 6.563 20 C 0.124 3.876 21 N -0.740 5.740 22 C -0.245 4.245 23 H 0.077 0.923 24 C -0.078 4.078 25 N -0.969 5.969 26 Si 0.976 3.024 27 H -0.265 1.265 28 H -0.295 1.295 29 H -0.291 1.291 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.160 0.840 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.375 0.625 45 H 0.041 0.959 46 H 0.021 0.979 47 H 0.375 0.625 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 23.716 -18.211 31.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C 0.040 3.960 4 O -0.089 6.089 5 C -0.018 4.018 6 C -0.123 4.123 7 C -0.105 4.105 8 C -0.139 4.139 9 C -0.111 4.111 10 C -0.120 4.120 11 C -0.243 4.243 12 C 0.387 3.613 13 O -0.443 6.443 14 N -0.327 5.327 15 C -0.065 4.065 16 C -0.029 4.029 17 C 0.037 3.963 18 H 0.111 0.889 19 O -0.368 6.368 20 C -0.003 4.003 21 N -0.383 5.383 22 C -0.377 4.377 23 H 0.095 0.905 24 C -0.271 4.271 25 N -0.620 5.620 26 Si 0.805 3.195 27 H -0.189 1.189 28 H -0.222 1.222 29 H -0.218 1.218 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.174 0.826 36 H 0.192 0.808 37 H 0.177 0.823 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.099 0.901 44 H 0.223 0.777 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.206 0.794 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.090 23.324 -18.354 31.040 hybrid contribution -0.753 -0.736 1.254 1.637 sum 8.337 22.588 -17.101 29.532 Atomic orbital electron populations 1.21699 0.92920 1.03469 1.01960 1.20419 0.97340 0.85565 1.05599 1.22850 0.96218 0.94554 0.82342 1.83777 1.69115 1.22430 1.33569 1.19977 1.02695 0.85757 0.93420 1.20405 1.01691 0.89277 1.00976 1.21416 0.97187 0.97127 0.94746 1.21451 0.99578 0.98647 0.94205 1.20681 0.98651 0.91359 1.00441 1.19660 1.04706 0.94290 0.93338 1.20541 1.14417 0.95840 0.93453 1.17302 0.82957 0.76283 0.84789 1.90752 1.28365 1.56954 1.68212 1.47680 1.13432 1.58656 1.12894 1.21960 0.83893 1.03143 0.97506 1.22161 1.04233 0.94698 0.81852 1.22390 0.85943 0.95908 0.92024 0.88914 1.86498 1.21314 1.70604 1.58411 1.21429 0.97991 0.85394 0.95481 1.42456 1.83594 1.06936 1.05300 1.19689 1.37843 0.93226 0.86946 0.90503 1.25627 1.03306 0.97699 1.00421 1.69851 1.56147 1.08870 1.27115 0.85040 0.76748 0.78310 0.79440 1.18894 1.22227 1.21812 0.91397 0.90048 0.94062 0.86862 0.89048 0.82599 0.80822 0.82256 0.85951 0.90826 0.89167 0.91446 0.86317 0.90131 0.77719 0.94070 0.96114 0.79352 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.89 71.98 0.71 -2.56 16 2 C -0.05 -1.15 6.25 29.85 0.19 -0.97 16 3 C 0.09 2.24 6.21 25.18 0.16 2.39 16 4 O -0.19 -4.45 10.53 -3.83 -0.04 -4.49 16 5 C 0.03 0.60 7.39 22.93 0.17 0.77 16 6 C -0.11 -1.53 10.06 22.35 0.22 -1.31 16 7 C -0.09 -0.92 10.01 22.28 0.22 -0.69 16 8 C -0.12 -1.55 10.04 22.28 0.22 -1.32 16 9 C -0.09 -1.82 10.09 22.38 0.23 -1.60 16 10 C -0.12 -2.85 6.39 -20.09 -0.13 -2.98 16 11 C -0.24 -6.43 4.31 -18.98 -0.08 -6.51 16 12 C 0.60 17.90 6.57 86.56 0.57 18.47 16 13 O -0.56 -20.80 15.47 4.16 0.06 -20.74 16 14 N -0.60 -14.74 2.83 -851.03 -2.41 -17.14 16 15 C 0.08 1.40 10.26 127.77 1.31 2.71 16 16 C 0.09 2.37 5.15 86.38 0.44 2.82 16 17 C 0.10 3.19 3.27 30.59 0.10 3.29 16 18 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 19 O -0.56 -21.13 12.09 -140.61 -1.70 -22.83 16 20 C 0.12 4.90 5.90 86.38 0.51 5.40 16 21 N -0.74 -38.59 5.55 -343.45 -1.91 -40.49 16 22 C -0.25 -13.96 9.99 84.04 0.84 -13.12 16 23 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 24 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 25 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 26 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 27 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 2.29 7.86 -2.39 -0.02 2.27 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 37 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 41 H 0.07 1.26 6.62 -2.39 -0.02 1.24 16 42 H 0.12 2.27 8.07 -2.39 -0.02 2.26 16 43 H 0.08 2.21 7.42 -2.39 -0.02 2.19 16 44 H 0.38 13.79 8.44 -74.06 -0.63 13.16 16 45 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.37 21.29 7.67 -92.71 -0.71 20.58 16 48 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -77.25 405.34 2.12 -75.12 By element: Atomic # 1 Polarization: 41.97 SS G_CDS: -0.35 Total: 41.63 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.15 Total: 0.66 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -4.03 Total: -118.26 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -1.68 Total: -48.06 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.25 2.12 -75.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717932678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.609 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds