Wall clock time and date at job start Wed Apr 1 2020 03:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.44960 * 2 1 4 4 C 1.46903 * 111.00151 * 60.02863 * 3 2 1 5 5 C 1.53003 * 109.47123 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47142 * 64.99829 * 5 4 3 7 7 C 1.42899 * 114.00032 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47024 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47045 * 65.00156 * 8 7 6 10 10 C 1.53036 * 109.46234 * 240.02907 * 2 1 3 11 11 C 1.53187 * 109.33909 * 301.36304 * 10 2 1 12 12 N 1.46931 * 108.77858 * 305.34763 * 11 10 2 13 13 C 1.34772 * 120.63173 * 233.63340 * 12 11 10 14 14 O 1.21282 * 119.99859 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99883 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47056 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99900 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99933 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99793 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00258 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99689 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47051 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46855 * 120.00593 * 21 19 17 24 24 H 1.48506 * 109.46792 * 240.00409 * 21 19 17 25 25 C 1.46925 * 118.73466 * 53.60925 * 12 11 10 26 26 C 1.53109 * 109.44561 * 120.00910 * 2 1 3 27 27 H 1.08996 * 109.47644 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47393 * 299.96960 * 1 2 3 29 29 H 1.09003 * 109.47046 * 59.96982 * 1 2 3 30 30 H 1.00898 * 111.00049 * 183.98375 * 3 2 1 31 31 H 1.08996 * 109.47380 * 300.00195 * 4 3 2 32 32 H 1.08998 * 109.46848 * 60.00490 * 4 3 2 33 33 H 1.08991 * 109.47071 * 185.00491 * 5 4 3 34 34 H 1.09003 * 109.47052 * 305.00224 * 5 4 3 35 35 H 1.08994 * 109.47261 * 300.00584 * 7 6 5 36 36 H 1.09001 * 109.46559 * 60.00242 * 7 6 5 37 37 H 1.09000 * 109.47167 * 185.00132 * 8 7 6 38 38 H 1.08992 * 109.47314 * 305.00171 * 8 7 6 39 39 H 0.96699 * 114.00288 * 179.97438 * 9 8 7 40 40 H 1.09002 * 109.49886 * 181.39426 * 10 2 1 41 41 H 1.09000 * 109.49395 * 61.32903 * 10 2 1 42 42 H 1.09004 * 109.58908 * 65.13475 * 11 10 2 43 43 H 1.09003 * 109.58748 * 185.41538 * 11 10 2 44 44 H 1.08993 * 109.46834 * 299.99901 * 15 13 12 45 45 H 1.08999 * 109.47079 * 59.99976 * 15 13 12 46 46 H 0.97004 * 120.00545 * 179.97438 * 20 19 17 47 47 H 1.08995 * 109.58986 * 66.17814 * 25 12 11 48 48 H 1.08997 * 109.58553 * 186.46513 * 25 12 11 49 49 H 1.09002 * 109.48980 * 298.69449 * 26 2 1 50 50 H 1.08999 * 109.51108 * 178.62441 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0191 1.3852 0.0000 4 6 1.5484 2.1098 1.1880 5 6 2.0764 3.5453 1.1523 6 8 1.5061 4.2351 0.0382 7 6 1.9357 5.5922 -0.0871 8 6 1.2654 6.2288 -1.3061 9 8 -0.1459 6.2973 -1.0921 10 6 2.0399 -0.7208 -1.2500 11 6 1.4996 -2.1542 -1.2649 12 7 1.8625 -2.8096 -0.0009 13 6 2.5164 -3.9881 -0.0015 14 8 2.8104 -4.5179 -1.0521 15 6 2.8821 -4.6475 1.3033 16 16 3.7448 -6.2038 0.9718 17 6 4.0455 -6.7443 2.6217 18 1 3.7128 -6.1441 3.4556 19 6 4.7091 -7.9419 2.8495 20 7 5.1141 -8.6736 1.8331 21 14 5.0273 -8.5153 4.5987 22 1 4.4759 -7.5207 5.5536 23 1 4.3687 -9.8283 4.8167 24 1 6.4899 -8.6529 4.8160 25 6 1.4994 -2.1555 1.2636 26 6 2.0397 -0.7221 1.2502 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5133 0.8902 29 1 -0.3633 0.5143 -0.8897 30 1 3.0256 1.4132 -0.0654 31 1 0.4586 2.1240 1.1969 32 1 1.9126 1.6106 2.0860 33 1 1.8022 4.0563 2.0752 34 1 3.1619 3.5309 1.0537 35 1 1.6583 6.1454 0.8101 36 1 3.0183 5.6205 -0.2111 37 1 1.6596 7.2342 -1.4539 38 1 1.4699 5.6248 -2.1900 39 1 -0.6364 6.6914 -1.8263 40 1 3.1296 -0.7429 -1.2382 41 1 1.6963 -0.1932 -2.1397 42 1 0.4146 -2.1347 -1.3680 43 1 1.9363 -2.7006 -2.1008 44 1 3.5326 -3.9857 1.8750 45 1 1.9762 -4.8492 1.8749 46 1 5.5782 -9.5104 1.9923 47 1 0.4145 -2.1361 1.3667 48 1 1.9359 -2.7049 2.0977 49 1 1.6955 -0.1952 2.1402 50 1 3.1294 -0.7441 1.2390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733861057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:34 Heat of formation + Delta-G solvation = -126.449441 kcal Electronic energy + Delta-G solvation = -28389.793985 eV Core-core repulsion = 24350.500714 eV Total energy + Delta-G solvation = -4039.293271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.44364 -38.79665 -38.17187 -36.79403 -35.29802 -32.59850 -32.43358 -31.39184 -30.05987 -29.16605 -27.92330 -27.63292 -25.50168 -23.86550 -23.59975 -22.85920 -21.94752 -20.00387 -18.40147 -18.07192 -17.71076 -17.30146 -16.92719 -16.13605 -15.86901 -15.61913 -15.41195 -15.18133 -14.81180 -14.75421 -14.66043 -14.47433 -14.09190 -13.87278 -13.39391 -13.33692 -13.19955 -12.92102 -12.65605 -12.42219 -12.28893 -12.11276 -11.96546 -11.84220 -11.59391 -11.47611 -11.33631 -11.12004 -11.07750 -11.01895 -10.88495 -10.76085 -10.50558 -10.47546 -9.91383 -9.79565 -9.32840 -9.07963 -8.63527 -8.43110 -8.21589 -6.50157 -6.22110 -3.92526 2.95616 3.07105 3.20763 3.25803 3.30159 3.30860 3.60716 3.80499 3.82221 4.19585 4.47340 4.50405 4.60071 4.72983 4.76361 4.80042 4.84846 4.91826 4.97807 5.02833 5.06315 5.08699 5.13066 5.15499 5.25178 5.26749 5.33250 5.38216 5.45671 5.52467 5.58296 5.63348 5.68399 5.74070 5.79578 5.86055 5.87899 6.00706 6.03550 6.11348 6.19902 6.68284 6.76880 6.91331 7.15509 7.21232 7.58342 7.60171 8.34810 8.58849 9.23230 10.85350 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.001815 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.286108 B =15419.925261 C =16121.679635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.116 3.884 3 N -0.669 5.669 4 C 0.054 3.946 5 C 0.065 3.935 6 O -0.362 6.362 7 C 0.059 3.941 8 C 0.079 3.921 9 O -0.567 6.567 10 C -0.118 4.118 11 C 0.113 3.887 12 N -0.619 5.619 13 C 0.535 3.465 14 O -0.517 6.517 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.112 3.888 26 C -0.165 4.165 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.338 0.662 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.378 0.622 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 30.322 -2.724 31.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 N -0.299 5.299 4 C -0.075 4.075 5 C -0.013 4.013 6 O -0.281 6.281 7 C -0.018 4.018 8 C 0.001 3.999 9 O -0.372 6.372 10 C -0.157 4.157 11 C -0.010 4.010 12 N -0.355 5.355 13 C 0.323 3.677 14 O -0.392 6.392 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.012 4.012 26 C -0.205 4.205 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.225 0.775 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.945 29.241 -4.314 30.882 hybrid contribution 0.624 0.389 2.849 2.943 sum -8.321 29.631 -1.465 30.812 Atomic orbital electron populations 1.21984 0.93641 1.01967 1.02451 1.20905 0.95672 0.86863 0.94074 1.60627 1.15946 1.12998 1.40292 1.22074 1.02032 0.91415 0.91948 1.22526 0.96827 0.92752 0.89148 1.88086 1.69079 1.22760 1.48143 1.22508 0.97270 0.84039 0.97940 1.22167 0.81822 0.98474 0.97434 1.86558 1.18499 1.85713 1.46411 1.21907 1.01110 0.94958 0.97722 1.21551 0.99682 0.92198 0.87549 1.48104 1.59074 1.21762 1.06599 1.20317 0.76328 0.79791 0.91290 1.90688 1.52515 1.62666 1.33309 1.23548 1.04637 1.04608 0.97275 1.85410 1.71591 1.15093 1.11365 1.22900 1.43699 1.09580 0.92125 0.90936 1.24989 0.94854 0.95491 0.98238 1.70025 1.36598 1.13305 1.30302 0.86126 0.78116 0.78633 0.82668 1.19641 1.20546 1.20569 1.21656 1.00108 0.92642 0.86801 1.22709 1.01637 0.96612 0.99516 0.91743 0.92676 0.91640 0.84375 0.89600 0.93350 0.93103 0.93617 0.93013 0.92151 0.92434 0.92576 0.77496 0.91601 0.89956 0.91551 0.88759 0.89427 0.89340 0.92234 0.91245 0.89356 0.90701 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.48 37.16 0.28 -0.97 16 2 C 0.12 1.05 0.71 -131.53 -0.09 0.95 16 3 N -0.67 -5.80 6.04 -99.89 -0.60 -6.40 16 4 C 0.05 0.42 5.29 -3.82 -0.02 0.40 16 5 C 0.06 0.48 6.22 37.16 0.23 0.71 16 6 O -0.36 -3.52 10.26 -40.09 -0.41 -3.93 16 7 C 0.06 0.42 6.32 37.16 0.23 0.66 16 8 C 0.08 0.49 7.43 37.16 0.28 0.76 16 9 O -0.57 -4.44 13.62 -40.09 -0.55 -4.98 16 10 C -0.12 -1.21 5.16 -26.62 -0.14 -1.35 16 11 C 0.11 1.40 5.96 -3.71 -0.02 1.38 16 12 N -0.62 -8.85 2.97 -172.77 -0.51 -9.37 16 13 C 0.53 10.31 7.72 -10.99 -0.08 10.23 16 14 O -0.52 -11.99 15.28 5.56 0.08 -11.90 16 15 C -0.15 -3.08 4.50 36.01 0.16 -2.92 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.11 1.24 5.88 -3.71 -0.02 1.22 16 26 C -0.16 -1.53 4.70 -26.57 -0.12 -1.65 16 27 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 28 H 0.05 0.45 6.40 -51.93 -0.33 0.12 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.34 2.82 8.72 -39.29 -0.34 2.47 16 31 H 0.09 0.74 6.30 -51.93 -0.33 0.42 16 32 H 0.05 0.33 6.28 -51.93 -0.33 0.00 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 1.18 9.12 45.56 0.42 1.59 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.73 6.69 -51.93 -0.35 0.38 16 43 H 0.09 1.35 7.01 -51.93 -0.36 0.99 16 44 H 0.09 1.67 7.69 -51.92 -0.40 1.27 16 45 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.07 0.68 6.69 -51.93 -0.35 0.33 16 48 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 49 H 0.07 0.59 6.34 -51.93 -0.33 0.26 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -36.48 402.83 -9.00 -45.47 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.45 Total: 1.56 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 0.88 Total: -3.55 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.38 Total: -41.24 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.87 Total: -20.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.48 -9.00 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733861057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.977 kcal (2) G-P(sol) polarization free energy of solvation -36.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds