Wall clock time and date at job start Wed Apr 1 2020 03:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.24656 * 2 1 4 4 C 1.54845 * 109.36066 * 119.65825 * 2 1 3 5 5 C 1.50121 * 110.81445 * 81.33764 * 4 2 1 6 6 H 1.09004 * 110.37458 * 338.64548 * 5 4 2 7 7 N 1.46505 * 110.24878 * 216.65483 * 5 4 2 8 8 C 1.34775 * 119.99978 * 159.01829 * 7 5 4 9 9 O 1.21279 * 120.00257 * 0.02562 * 8 7 5 10 10 C 1.50706 * 120.00025 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47027 * 180.02562 * 10 8 7 12 12 S 1.81403 * 109.46884 * 180.02562 * 11 10 8 13 13 C 1.81396 * 101.92104 * 179.97438 * 12 11 10 14 14 O 1.42094 * 108.57701 * 294.48874 * 12 11 10 15 15 O 1.42101 * 108.57627 * 65.51046 * 12 11 10 16 16 C 1.52527 * 105.41433 * 97.68551 * 5 4 2 17 17 C 1.46238 * 114.27438 * 270.58765 * 16 5 4 18 18 N 1.50164 * 107.53002 * 58.41187 * 17 16 5 19 19 C 1.36940 * 120.53765 * 109.56644 * 18 17 16 20 20 H 1.08006 * 120.00126 * 172.84054 * 19 18 17 21 21 C 1.38809 * 120.00009 * 352.83587 * 19 18 17 22 22 N 1.31621 * 120.00107 * 319.31217 * 21 19 18 23 23 Si 1.86806 * 120.00059 * 139.31196 * 21 19 18 24 24 H 1.48500 * 109.47250 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.46682 * 300.00198 * 23 21 19 26 26 H 1.48500 * 109.46820 * 59.99889 * 23 21 19 27 27 C 1.43430 * 118.92544 * 289.83407 * 18 17 16 28 28 H 1.09001 * 109.47108 * 300.34249 * 1 2 3 29 29 H 1.08998 * 109.47598 * 60.34437 * 1 2 3 30 30 H 1.09005 * 109.47215 * 180.34541 * 1 2 3 31 31 H 1.08997 * 109.46707 * 179.66294 * 3 2 1 32 32 H 1.09001 * 109.46570 * 299.65666 * 3 2 1 33 33 H 1.08993 * 109.47077 * 59.65847 * 3 2 1 34 34 H 1.08995 * 109.20678 * 320.99625 * 4 2 1 35 35 H 1.09000 * 109.17081 * 201.65801 * 4 2 1 36 36 H 0.96998 * 119.99726 * 339.02488 * 7 5 4 37 37 H 1.09001 * 109.47280 * 300.00323 * 10 8 7 38 38 H 1.09000 * 109.46655 * 59.99994 * 10 8 7 39 39 H 1.09001 * 109.47094 * 300.00118 * 11 10 8 40 40 H 1.08996 * 109.47062 * 59.99912 * 11 10 8 41 41 H 1.09004 * 109.46832 * 60.00282 * 13 12 11 42 42 H 1.08994 * 109.47258 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.47381 * 300.00027 * 13 12 11 44 44 H 1.09004 * 108.51900 * 149.35009 * 16 5 4 45 45 H 1.08994 * 108.39931 * 31.74574 * 16 5 4 46 46 H 1.08996 * 109.85131 * 298.89823 * 17 16 5 47 47 H 1.09006 * 109.84163 * 177.91356 * 17 16 5 48 48 H 0.96994 * 119.99852 * 353.67533 * 22 21 19 49 49 H 1.09001 * 108.15893 * 213.03183 * 27 18 17 50 50 H 1.09000 * 108.16547 * 329.60142 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4445 0.0000 4 6 2.0433 -0.7229 1.2695 5 6 2.0208 -2.2121 1.0813 6 1 1.3251 -2.4838 0.2873 7 7 1.6452 -2.8756 2.3323 8 6 1.1554 -4.1310 2.3085 9 8 1.0260 -4.7116 1.2516 10 6 0.7696 -4.8138 3.5955 11 6 0.2476 -6.2193 3.2905 12 16 -0.2175 -7.0409 4.8395 13 6 -0.7958 -8.6554 4.2483 14 8 0.9550 -7.2365 5.6179 15 8 -1.3193 -6.3460 5.4073 16 6 3.4446 -2.5927 0.6887 17 6 3.6998 -2.5624 -0.7509 18 7 3.4055 -1.1711 -1.2333 19 6 4.4211 -0.3433 -1.6313 20 1 4.1943 0.6106 -2.0843 21 6 5.7422 -0.7300 -1.4526 22 7 6.1060 -1.3364 -0.3424 23 14 7.0039 -0.3899 -2.7876 24 1 8.3307 -0.8979 -2.3557 25 1 6.5958 -1.0750 -4.0403 26 1 7.0877 1.0731 -3.0282 27 6 2.0439 -0.7214 -1.2648 28 1 -0.3633 0.5191 0.8869 29 1 -0.3634 0.5084 -0.8930 30 1 -0.3634 -1.0277 0.0062 31 1 3.1243 1.4487 0.0060 32 1 1.6740 1.9551 -0.8931 33 1 1.6640 1.9586 0.8869 34 1 1.4076 -0.4586 2.1144 35 1 3.0647 -0.4028 1.4753 36 1 1.7489 -2.4114 3.1776 37 1 1.6419 -4.8837 4.2454 38 1 -0.0094 -4.2366 4.0936 39 1 -0.6246 -6.1498 2.6404 40 1 1.0268 -6.7962 2.7925 41 1 0.0141 -9.1611 3.7224 42 1 -1.1113 -9.2615 5.0975 43 1 -1.6371 -8.5139 3.5699 44 1 3.6476 -3.5990 1.0553 45 1 4.1323 -1.9023 1.1770 46 1 3.0489 -3.2751 -1.2573 47 1 4.7434 -2.8090 -0.9470 48 1 5.4745 -1.4313 0.3876 49 1 1.9307 -0.0401 -2.1081 50 1 1.4046 -1.5856 -1.4452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001750946510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:43 Heat of formation + Delta-G solvation = -82.198297 kcal Electronic energy + Delta-G solvation = -30104.977772 eV Core-core repulsion = 26067.603374 eV Total energy + Delta-G solvation = -4037.374398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -40.12380 -38.52888 -37.33152 -36.39155 -34.89115 -34.76727 -33.44352 -31.54053 -30.70195 -30.03160 -27.89097 -26.81845 -25.43180 -25.22592 -23.43351 -21.60711 -20.44995 -20.28152 -19.23751 -18.29077 -17.57020 -17.12046 -16.68504 -16.46520 -16.14626 -15.87249 -15.53623 -15.04586 -14.31946 -14.09400 -13.96700 -13.75081 -13.63587 -13.62311 -13.49771 -13.39847 -12.84917 -12.77027 -12.49794 -12.43543 -12.34137 -12.15203 -11.86273 -11.77352 -11.76363 -11.45945 -11.24833 -11.09871 -11.00667 -10.88523 -10.63569 -10.30854 -10.28883 -10.12502 -9.99001 -9.89823 -9.76474 -9.65031 -9.47608 -8.81240 -8.16556 -6.98061 -6.15412 -3.00601 -0.42062 2.33384 2.65342 3.06279 3.41513 3.52283 3.59702 3.63711 3.75540 4.10815 4.34453 4.37404 4.60500 4.62121 4.69632 5.05689 5.11121 5.16502 5.18144 5.22586 5.29428 5.32217 5.42857 5.46451 5.65491 5.77169 5.84604 6.01005 6.07310 6.13543 6.21706 6.30306 6.31999 6.36689 6.49182 6.62306 6.65922 6.73087 6.80091 6.87168 6.97558 7.03876 7.21288 7.23586 7.60822 8.00750 8.28708 8.54045 9.09452 9.86754 10.31937 11.14946 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.002610 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.462416 B =10725.632819 C =11765.270126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.103 4.103 5 C 0.149 3.851 6 H 0.091 0.909 7 N -0.720 5.720 8 C 0.518 3.482 9 O -0.536 6.536 10 C -0.135 4.135 11 C -0.593 4.593 12 S 2.422 3.578 13 C -0.655 4.655 14 O -0.939 6.939 15 O -0.941 6.941 16 C -0.139 4.139 17 C 0.134 3.866 18 N -0.589 5.589 19 C -0.354 4.354 20 H 0.067 0.933 21 C -0.017 4.017 22 N -0.902 5.902 23 Si 1.036 2.964 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.295 1.295 27 C 0.169 3.831 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.397 0.603 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.027 0.973 47 H 0.096 0.904 48 H 0.272 0.728 49 H 0.037 0.963 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.405 -8.921 9.597 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.186 4.186 4 C -0.141 4.141 5 C 0.045 3.955 6 H 0.109 0.891 7 N -0.370 5.370 8 C 0.302 3.698 9 O -0.413 6.413 10 C -0.177 4.177 11 C -0.722 4.722 12 S 2.604 3.396 13 C -0.804 4.804 14 O -0.936 6.936 15 O -0.938 6.938 16 C -0.179 4.179 17 C 0.010 3.990 18 N -0.309 5.309 19 C -0.482 4.482 20 H 0.084 0.916 21 C -0.219 4.219 22 N -0.544 5.544 23 Si 0.867 3.133 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.222 1.222 27 C 0.039 3.961 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.231 0.769 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.055 0.945 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.827 -9.260 9.216 18.309 hybrid contribution -1.594 0.276 0.137 1.624 sum -14.421 -8.984 9.353 19.395 Atomic orbital electron populations 1.21833 0.95847 1.00815 1.00761 1.21917 0.93588 0.96266 0.97845 1.21751 1.02607 0.94778 0.99501 1.21786 1.01990 0.93044 0.97323 1.20433 0.97547 0.92305 0.85173 0.89135 1.46262 1.64840 1.15187 1.10723 1.20143 0.77376 0.81855 0.90429 1.90709 1.54023 1.64415 1.32141 1.21371 1.04049 0.93764 0.98466 1.30124 1.12833 1.07364 1.21919 1.07792 0.75769 0.78216 0.77819 1.30241 1.13254 1.23332 1.13607 1.93614 1.48616 1.85527 1.65833 1.93604 1.53789 1.71588 1.74804 1.21439 0.95012 1.00665 1.00780 1.20515 1.02177 0.85523 0.90803 1.44404 1.01602 1.09549 1.75390 1.19910 0.87326 1.03075 1.37853 0.91552 1.25405 0.96146 1.00237 1.00133 1.70872 1.36724 1.44627 1.02158 0.83941 0.76591 0.75670 0.77142 1.21419 1.22333 1.22223 1.20328 0.86407 0.95756 0.93583 0.93581 0.93087 0.93365 0.91230 0.93635 0.94618 0.93376 0.90757 0.76922 0.87222 0.87357 0.84214 0.84089 0.85140 0.85238 0.85201 0.93872 0.90866 0.95525 0.88552 0.91456 0.94495 0.95290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.20 37.16 0.30 -1.61 16 2 C -0.09 -1.55 0.76 -152.80 -0.12 -1.67 16 3 C -0.13 -2.21 8.28 37.16 0.31 -1.90 16 4 C -0.10 -1.70 4.15 -27.19 -0.11 -1.81 16 5 C 0.15 2.51 2.10 -69.60 -0.15 2.36 16 6 H 0.09 1.70 5.29 -51.93 -0.27 1.43 16 7 N -0.72 -9.69 5.01 -55.44 -0.28 -9.97 16 8 C 0.52 7.03 7.68 -10.98 -0.08 6.95 16 9 O -0.54 -9.27 15.70 5.56 0.09 -9.18 16 10 C -0.14 -1.24 5.71 -27.88 -0.16 -1.40 16 11 C -0.59 -4.32 5.09 37.16 0.19 -4.13 16 12 S 2.42 16.33 5.36 -107.50 -0.58 15.76 16 13 C -0.65 -2.36 10.62 101.05 1.07 -1.29 16 14 O -0.94 -9.92 18.10 -57.83 -1.05 -10.96 16 15 O -0.94 -9.61 18.10 -57.83 -1.05 -10.66 16 16 C -0.14 -2.79 4.67 -30.19 -0.14 -2.93 16 17 C 0.13 3.08 5.23 -5.21 -0.03 3.06 16 18 N -0.59 -13.82 2.62 -175.40 -0.46 -14.28 16 19 C -0.35 -9.30 8.81 -15.06 -0.13 -9.43 16 20 H 0.07 1.78 8.05 -52.48 -0.42 1.36 16 21 C -0.02 -0.46 4.53 -17.43 -0.08 -0.54 16 22 N -0.90 -25.41 11.99 55.49 0.67 -24.75 16 23 Si 1.04 24.58 30.06 -169.99 -5.11 19.47 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.17 3.40 3.97 -4.93 -0.02 3.38 16 28 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.69 7.57 -51.93 -0.39 0.29 16 31 H 0.07 1.41 7.47 -51.93 -0.39 1.02 16 32 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.68 7.64 -51.93 -0.40 0.28 16 35 H 0.07 1.42 6.64 -51.93 -0.34 1.08 16 36 H 0.40 4.16 8.45 -40.82 -0.34 3.82 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.14 0.88 8.10 -51.92 -0.42 0.46 16 40 H 0.14 0.95 8.10 -51.93 -0.42 0.53 16 41 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 44 H 0.04 0.86 7.90 -51.93 -0.41 0.45 16 45 H 0.07 1.62 4.65 -51.93 -0.24 1.37 16 46 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 47 H 0.10 2.51 5.60 -51.93 -0.29 2.21 16 48 H 0.27 7.47 4.95 -40.82 -0.20 7.27 16 49 H 0.04 0.77 7.81 -51.93 -0.41 0.36 16 50 H 0.03 0.57 6.68 -51.93 -0.35 0.23 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -36.13 394.30 -9.29 -45.42 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.32 Total: 4.18 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 0.86 Total: -10.97 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.07 Total: -49.00 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -2.01 Total: -30.80 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.11 Total: 19.47 kcal Atomic # 16 Polarization: 16.33 SS G_CDS: -0.58 Total: 15.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.13 -9.29 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750946510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.782 kcal (2) G-P(sol) polarization free energy of solvation -36.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds