Wall clock time and date at job start Wed Apr 1 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.24656 * 2 1 4 4 C 1.54845 * 109.36066 * 119.65825 * 2 1 3 5 5 C 1.50121 * 110.81445 * 81.33764 * 4 2 1 6 6 H 1.09004 * 110.37458 * 338.64548 * 5 4 2 7 7 N 1.46505 * 110.24878 * 216.65483 * 5 4 2 8 8 C 1.34775 * 119.99978 * 159.01829 * 7 5 4 9 9 O 1.21279 * 120.00257 * 0.02562 * 8 7 5 10 10 C 1.50706 * 120.00025 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47027 * 180.02562 * 10 8 7 12 12 S 1.81403 * 109.46884 * 180.02562 * 11 10 8 13 13 C 1.81396 * 101.92104 * 179.97438 * 12 11 10 14 14 O 1.42094 * 108.57701 * 294.48874 * 12 11 10 15 15 O 1.42101 * 108.57627 * 65.51046 * 12 11 10 16 16 C 1.52527 * 105.41433 * 97.68551 * 5 4 2 17 17 C 1.46238 * 114.27438 * 270.58765 * 16 5 4 18 18 N 1.50164 * 107.53002 * 58.41187 * 17 16 5 19 19 C 1.36940 * 120.53765 * 109.56644 * 18 17 16 20 20 H 1.08006 * 120.00126 * 172.84054 * 19 18 17 21 21 C 1.38809 * 120.00009 * 352.83587 * 19 18 17 22 22 N 1.31621 * 120.00107 * 319.31217 * 21 19 18 23 23 Si 1.86806 * 120.00059 * 139.31196 * 21 19 18 24 24 H 1.48500 * 109.47250 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.46682 * 300.00198 * 23 21 19 26 26 H 1.48500 * 109.46820 * 59.99889 * 23 21 19 27 27 C 1.43430 * 118.92544 * 289.83407 * 18 17 16 28 28 H 1.09001 * 109.47108 * 300.34249 * 1 2 3 29 29 H 1.08998 * 109.47598 * 60.34437 * 1 2 3 30 30 H 1.09005 * 109.47215 * 180.34541 * 1 2 3 31 31 H 1.08997 * 109.46707 * 179.66294 * 3 2 1 32 32 H 1.09001 * 109.46570 * 299.65666 * 3 2 1 33 33 H 1.08993 * 109.47077 * 59.65847 * 3 2 1 34 34 H 1.08995 * 109.20678 * 320.99625 * 4 2 1 35 35 H 1.09000 * 109.17081 * 201.65801 * 4 2 1 36 36 H 0.96998 * 119.99726 * 339.02488 * 7 5 4 37 37 H 1.09001 * 109.47280 * 300.00323 * 10 8 7 38 38 H 1.09000 * 109.46655 * 59.99994 * 10 8 7 39 39 H 1.09001 * 109.47094 * 300.00118 * 11 10 8 40 40 H 1.08996 * 109.47062 * 59.99912 * 11 10 8 41 41 H 1.09004 * 109.46832 * 60.00282 * 13 12 11 42 42 H 1.08994 * 109.47258 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.47381 * 300.00027 * 13 12 11 44 44 H 1.09004 * 108.51900 * 149.35009 * 16 5 4 45 45 H 1.08994 * 108.39931 * 31.74574 * 16 5 4 46 46 H 1.08996 * 109.85131 * 298.89823 * 17 16 5 47 47 H 1.09006 * 109.84163 * 177.91356 * 17 16 5 48 48 H 0.96994 * 119.99852 * 353.67533 * 22 21 19 49 49 H 1.09001 * 108.15893 * 213.03183 * 27 18 17 50 50 H 1.09000 * 108.16547 * 329.60142 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4445 0.0000 4 6 2.0433 -0.7229 1.2695 5 6 2.0208 -2.2121 1.0813 6 1 1.3251 -2.4838 0.2873 7 7 1.6452 -2.8756 2.3323 8 6 1.1554 -4.1310 2.3085 9 8 1.0260 -4.7116 1.2516 10 6 0.7696 -4.8138 3.5955 11 6 0.2476 -6.2193 3.2905 12 16 -0.2175 -7.0409 4.8395 13 6 -0.7958 -8.6554 4.2483 14 8 0.9550 -7.2365 5.6179 15 8 -1.3193 -6.3460 5.4073 16 6 3.4446 -2.5927 0.6887 17 6 3.6998 -2.5624 -0.7509 18 7 3.4055 -1.1711 -1.2333 19 6 4.4211 -0.3433 -1.6313 20 1 4.1943 0.6106 -2.0843 21 6 5.7422 -0.7300 -1.4526 22 7 6.1060 -1.3364 -0.3424 23 14 7.0039 -0.3899 -2.7876 24 1 8.3307 -0.8979 -2.3557 25 1 6.5958 -1.0750 -4.0403 26 1 7.0877 1.0731 -3.0282 27 6 2.0439 -0.7214 -1.2648 28 1 -0.3633 0.5191 0.8869 29 1 -0.3634 0.5084 -0.8930 30 1 -0.3634 -1.0277 0.0062 31 1 3.1243 1.4487 0.0060 32 1 1.6740 1.9551 -0.8931 33 1 1.6640 1.9586 0.8869 34 1 1.4076 -0.4586 2.1144 35 1 3.0647 -0.4028 1.4753 36 1 1.7489 -2.4114 3.1776 37 1 1.6419 -4.8837 4.2454 38 1 -0.0094 -4.2366 4.0936 39 1 -0.6246 -6.1498 2.6404 40 1 1.0268 -6.7962 2.7925 41 1 0.0141 -9.1611 3.7224 42 1 -1.1113 -9.2615 5.0975 43 1 -1.6371 -8.5139 3.5699 44 1 3.6476 -3.5990 1.0553 45 1 4.1323 -1.9023 1.1770 46 1 3.0489 -3.2751 -1.2573 47 1 4.7434 -2.8090 -0.9470 48 1 5.4745 -1.4313 0.3876 49 1 1.9307 -0.0401 -2.1081 50 1 1.4046 -1.5856 -1.4452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001750946510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:42 Heat of formation + Delta-G solvation = -109.131707 kcal Electronic energy + Delta-G solvation = -30106.145693 eV Core-core repulsion = 26067.603374 eV Total energy + Delta-G solvation = -4038.542318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.42298 -39.91866 -37.99144 -37.05482 -36.57594 -36.14359 -34.26383 -33.21238 -32.38244 -30.37467 -29.35756 -28.12787 -27.05133 -26.27622 -25.06454 -23.17373 -22.06900 -21.48609 -19.81552 -19.71500 -19.00364 -18.43787 -17.50156 -17.29344 -17.08943 -16.77021 -16.59614 -16.41161 -15.89380 -15.62266 -15.49602 -15.30478 -14.75720 -14.72530 -14.21399 -13.98721 -13.91518 -13.89629 -13.76013 -13.52764 -13.41148 -13.14780 -13.12107 -13.02683 -12.87206 -12.60766 -12.46473 -12.45516 -12.38754 -12.03882 -12.01295 -11.90951 -11.78545 -11.68008 -11.59707 -11.54711 -11.31623 -11.24257 -10.84285 -10.31347 -9.98124 -8.91665 -8.26915 -5.06955 -0.93503 1.58448 1.59632 1.66005 1.84784 1.85885 2.12124 2.69149 2.76042 3.14155 3.14869 3.39485 3.43415 3.75712 3.79262 3.86007 3.94515 3.95767 4.13916 4.23852 4.25722 4.28047 4.36664 4.40892 4.56932 4.58281 4.64229 4.73571 4.83204 4.85104 4.86441 4.89970 4.98224 5.01339 5.06465 5.10437 5.15308 5.20247 5.30885 5.35364 5.42447 5.47772 5.58615 5.65273 5.93736 6.47721 6.54180 7.10022 7.22721 7.86620 8.34152 9.05667 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.002610 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.462416 B =10725.632819 C =11765.270126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.096 4.096 5 C 0.165 3.835 6 H 0.077 0.923 7 N -0.713 5.713 8 C 0.514 3.486 9 O -0.576 6.576 10 C -0.139 4.139 11 C -0.597 4.597 12 S 2.441 3.559 13 C -0.639 4.639 14 O -0.982 6.982 15 O -0.978 6.978 16 C -0.125 4.125 17 C 0.141 3.859 18 N -0.600 5.600 19 C -0.350 4.350 20 H 0.057 0.943 21 C -0.065 4.065 22 N -0.930 5.930 23 Si 1.083 2.917 24 H -0.297 1.297 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.165 3.835 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.414 0.586 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.037 0.963 45 H 0.051 0.949 46 H 0.026 0.974 47 H 0.062 0.938 48 H 0.267 0.733 49 H 0.027 0.973 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.779 -9.286 10.363 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.180 4.180 4 C -0.134 4.134 5 C 0.060 3.940 6 H 0.095 0.905 7 N -0.365 5.365 8 C 0.301 3.699 9 O -0.455 6.455 10 C -0.180 4.180 11 C -0.725 4.725 12 S 2.627 3.373 13 C -0.792 4.792 14 O -0.979 6.979 15 O -0.975 6.975 16 C -0.165 4.165 17 C 0.016 3.984 18 N -0.322 5.322 19 C -0.479 4.479 20 H 0.075 0.925 21 C -0.263 4.263 22 N -0.574 5.574 23 Si 0.911 3.089 24 H -0.223 1.223 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.037 3.963 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.251 0.749 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.160 0.840 43 H 0.170 0.830 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.224 -9.568 10.022 20.586 hybrid contribution -0.921 0.318 -0.164 0.989 sum -16.145 -9.250 9.858 21.057 Atomic orbital electron populations 1.21749 0.92890 1.01389 1.02367 1.21803 0.95794 0.95581 0.95939 1.21666 0.99979 0.95258 1.01050 1.21663 1.00905 0.92435 0.98352 1.20008 0.94715 0.92825 0.86451 0.90541 1.46122 1.64593 1.15531 1.10252 1.20904 0.76160 0.81374 0.91459 1.90691 1.55571 1.65212 1.34038 1.21504 1.05563 0.94747 0.96157 1.30173 1.13478 1.06424 1.22455 1.07026 0.74238 0.79025 0.77005 1.30095 1.14634 1.19802 1.14666 1.93558 1.50420 1.86448 1.67476 1.93553 1.54500 1.73551 1.75915 1.21232 0.97048 0.99688 0.98551 1.20326 1.00006 0.85398 0.92663 1.44438 1.02380 1.09372 1.76052 1.19979 0.88067 1.02873 1.36935 0.92509 1.26379 0.98038 1.00819 1.01052 1.70919 1.36945 1.46742 1.02799 0.83268 0.74334 0.76266 0.75034 1.22321 1.21838 1.20680 1.20464 0.84770 0.95968 0.95124 0.91217 0.92283 0.93311 0.95164 0.93110 0.91991 0.89955 0.93764 0.74923 0.85831 0.84979 0.83065 0.83684 0.83288 0.84030 0.82989 0.94419 0.93015 0.95606 0.91964 0.92018 0.95440 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.20 71.98 0.59 -2.61 16 2 C -0.09 -2.84 0.76 -51.07 -0.04 -2.88 16 3 C -0.12 -4.04 8.28 71.98 0.60 -3.44 16 4 C -0.10 -3.03 4.15 30.30 0.13 -2.91 16 5 C 0.16 5.48 2.10 43.91 0.09 5.58 16 6 H 0.08 2.83 5.29 -2.38 -0.01 2.82 16 7 N -0.71 -18.20 5.01 -447.70 -2.24 -20.45 16 8 C 0.51 13.29 7.68 87.66 0.67 13.96 16 9 O -0.58 -19.52 15.70 -3.03 -0.05 -19.57 16 10 C -0.14 -2.29 5.71 29.85 0.17 -2.12 16 11 C -0.60 -7.58 5.09 71.98 0.37 -7.21 16 12 S 2.44 28.82 5.36 -56.49 -0.30 28.52 16 13 C -0.64 -2.51 10.62 113.37 1.20 -1.31 16 14 O -0.98 -19.88 18.10 -127.37 -2.31 -22.19 16 15 O -0.98 -18.61 18.10 -127.37 -2.30 -20.91 16 16 C -0.12 -5.18 4.67 28.36 0.13 -5.05 16 17 C 0.14 6.73 5.23 83.58 0.44 7.16 16 18 N -0.60 -29.03 2.62 -708.85 -1.86 -30.89 16 19 C -0.35 -18.92 8.81 84.03 0.74 -18.18 16 20 H 0.06 3.13 8.05 -2.91 -0.02 3.11 16 21 C -0.06 -3.61 4.53 84.86 0.38 -3.22 16 22 N -0.93 -54.44 11.99 21.65 0.26 -54.18 16 23 Si 1.08 50.98 30.06 68.60 2.06 53.04 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 C 0.16 6.66 3.97 87.43 0.35 7.00 16 28 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.25 7.57 -2.38 -0.02 1.23 16 31 H 0.03 1.22 7.47 -2.39 -0.02 1.20 16 32 H 0.05 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.05 7.64 -2.39 -0.02 2.04 16 35 H 0.04 1.70 6.64 -2.39 -0.02 1.68 16 36 H 0.41 7.79 8.45 -92.71 -0.78 7.01 16 37 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.13 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.15 1.56 8.10 -2.39 -0.02 1.54 16 40 H 0.14 1.73 8.10 -2.39 -0.02 1.71 16 41 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.04 1.56 7.90 -2.38 -0.02 1.54 16 45 H 0.05 2.39 4.65 -2.39 -0.01 2.38 16 46 H 0.03 1.21 8.13 -2.39 -0.02 1.19 16 47 H 0.06 3.41 5.60 -2.38 -0.01 3.39 16 48 H 0.27 15.38 4.95 -92.71 -0.46 14.93 16 49 H 0.03 1.14 7.81 -2.39 -0.02 1.13 16 50 H 0.03 1.25 6.68 -2.39 -0.02 1.24 16 Total: -1.00 -81.38 394.30 -0.46 -81.84 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.46 Total: 19.99 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 5.82 Total: -15.21 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.84 Total: -105.52 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -4.66 Total: -62.66 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.06 Total: 53.04 kcal Atomic # 16 Polarization: 28.82 SS G_CDS: -0.30 Total: 28.52 kcal Total: -81.38 -0.46 -81.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750946510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.295 kcal (2) G-P(sol) polarization free energy of solvation -81.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds