Wall clock time and date at job start Wed Apr 1 2020 03:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.44367 * 2 1 4 4 C 1.36936 * 120.00067 * 299.96364 * 3 2 1 5 5 H 1.08006 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.38813 * 120.00072 * 180.02562 * 4 3 2 7 7 N 1.31618 * 119.99806 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00061 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46992 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47288 * 119.99655 * 8 6 4 11 11 H 1.48494 * 109.46842 * 239.99637 * 8 6 4 12 12 C 1.53346 * 109.41904 * 240.09494 * 2 1 3 13 13 C 1.53195 * 109.14901 * 178.67276 * 12 2 1 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 2 15 15 C 1.34778 * 120.63255 * 126.34238 * 14 13 12 16 16 O 1.21279 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00023 * 179.97438 * 15 14 13 18 18 C 1.54900 * 129.09200 * 299.93562 * 17 15 14 19 19 C 1.57174 * 77.91599 * 180.16830 * 18 17 15 20 20 C 1.52995 * 129.24760 * 179.19793 * 19 18 17 21 21 F 1.39896 * 109.46998 * 301.28500 * 20 19 18 22 22 F 1.39904 * 109.47287 * 61.28448 * 20 19 18 23 23 F 1.39901 * 109.46851 * 181.28186 * 20 19 18 24 24 C 1.54416 * 83.73152 * 42.47296 * 19 18 17 25 25 C 1.54890 * 129.09081 * 60.06566 * 17 15 14 26 26 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 27 27 C 1.53034 * 109.46014 * 119.96360 * 2 1 3 28 28 H 1.08997 * 109.47399 * 300.03371 * 1 2 3 29 29 H 1.08997 * 109.47115 * 60.03425 * 1 2 3 30 30 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 31 31 H 0.97004 * 119.99912 * 119.97242 * 3 2 1 32 32 H 0.97001 * 120.00033 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.68637 * 58.70485 * 12 2 1 34 34 H 1.09002 * 109.47277 * 298.50741 * 12 2 1 35 35 H 1.09002 * 109.58720 * 294.71670 * 13 12 2 36 36 H 1.08996 * 109.58651 * 174.43567 * 13 12 2 37 37 H 1.08998 * 114.97695 * 291.96240 * 18 17 15 38 38 H 1.08994 * 114.97365 * 67.13654 * 18 17 15 39 39 H 1.08993 * 114.92967 * 205.05412 * 24 19 18 40 40 H 1.08998 * 114.92629 * 70.03468 * 24 19 18 41 41 H 1.09002 * 114.97462 * 292.86018 * 25 17 15 42 42 H 1.08993 * 114.98283 * 68.03896 * 25 17 15 43 43 H 1.08994 * 109.58580 * 173.39910 * 26 14 13 44 44 H 1.09006 * 109.57831 * 293.67403 * 26 14 13 45 45 H 1.08994 * 109.50232 * 61.43679 * 27 2 1 46 46 H 1.09007 * 109.52628 * 301.35340 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0177 1.3815 0.0000 4 6 1.6871 2.2243 -1.0274 5 1 1.0665 1.8707 -1.8375 6 6 2.1497 3.5331 -1.0277 7 7 2.9055 3.9641 -0.0401 8 14 1.6981 4.6830 -2.4288 9 1 0.8448 3.9609 -3.4064 10 1 0.9554 5.8510 -1.8909 11 1 2.9354 5.1511 -3.1032 12 6 2.0399 -0.7210 -1.2537 13 6 3.5714 -0.6884 -1.2642 14 7 4.0679 -1.2486 0.0000 15 6 4.9622 -2.2570 0.0000 16 8 5.3644 -2.7109 -1.0502 17 6 5.4624 -2.8205 1.3051 18 6 6.2213 -2.1056 2.4507 19 6 6.1095 -3.5752 2.9969 20 6 6.6306 -4.1620 4.3102 21 9 8.0171 -3.9898 4.3802 22 9 6.0243 -3.5063 5.3871 23 9 6.3268 -5.5266 4.3643 24 6 6.4743 -3.9615 1.5471 25 6 4.6624 -3.4882 2.4512 26 6 3.5714 -0.6884 1.2643 27 6 2.0399 -0.7207 1.2501 28 1 -0.3634 0.5143 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3633 -1.0276 0.0005 31 1 2.5749 1.6991 0.7277 32 1 3.2285 4.8788 -0.0401 33 1 1.6592 -0.2219 -2.1447 34 1 1.6981 -1.7560 -1.2418 35 1 3.9143 0.3411 -1.3674 36 1 3.9438 -1.2828 -2.0985 37 1 7.2342 -1.7879 2.2037 38 1 5.6423 -1.3546 2.9879 39 1 6.1357 -4.9497 1.2359 40 1 7.5000 -3.7354 1.2557 41 1 3.9861 -2.8233 2.9885 42 1 4.2258 -4.4559 2.2047 43 1 3.9417 -1.2843 2.0984 44 1 3.9164 0.3403 1.3685 45 1 1.6979 -1.7555 1.2384 46 1 1.6572 -0.2211 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755135825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:04 Heat of formation + Delta-G solvation = -70.568101 kcal Electronic energy + Delta-G solvation = -32155.759649 eV Core-core repulsion = 27441.588882 eV Total energy + Delta-G solvation = -4714.170766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.33914 -47.88744 -47.87595 -42.57338 -39.55226 -37.69453 -34.58289 -32.36676 -30.93815 -29.21572 -28.54146 -27.73228 -26.34425 -26.26372 -24.72339 -24.01272 -22.88150 -22.22380 -20.40011 -19.10368 -18.66952 -18.65567 -18.14679 -17.45068 -17.13843 -16.36688 -15.33526 -15.21459 -14.98249 -14.93296 -14.73037 -14.61859 -14.39253 -14.30922 -14.03470 -14.03373 -13.99300 -13.78731 -13.61438 -13.41237 -13.14408 -12.51918 -12.35926 -11.99562 -11.92598 -11.87631 -11.66957 -11.56770 -11.39528 -11.26261 -10.97211 -10.88472 -10.78775 -10.78552 -10.69508 -10.30439 -10.16576 -9.83827 -9.66907 -9.51422 -8.98236 -8.31453 -7.01491 -5.82648 -3.10799 2.29529 2.47600 3.06526 3.14031 3.24013 3.39295 3.45836 3.47609 3.47779 3.80147 3.96640 4.16445 4.31148 4.34694 4.51730 4.55012 4.93816 5.11758 5.14303 5.24679 5.29323 5.32975 5.44105 5.45670 5.48677 5.53251 5.58285 5.62334 5.68789 5.77198 5.89461 5.98870 6.13683 6.23380 6.30663 6.39361 6.45922 6.58958 6.69411 6.83649 6.97698 7.00912 7.63613 7.67691 8.28637 8.35755 9.47887 10.03308 10.38560 11.39964 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002763 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.547961 B =10130.845848 C =10276.787595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 N -0.716 5.716 4 C -0.231 4.231 5 H 0.071 0.929 6 C -0.012 4.012 7 N -0.932 5.932 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.293 1.293 11 H -0.293 1.293 12 C -0.133 4.133 13 C 0.121 3.879 14 N -0.588 5.588 15 C 0.572 3.428 16 O -0.541 6.541 17 C -0.145 4.145 18 C -0.075 4.075 19 C -0.226 4.226 20 C 0.523 3.477 21 F -0.176 7.176 22 F -0.175 7.175 23 F -0.177 7.177 24 C -0.064 4.064 25 C -0.075 4.075 26 C 0.103 3.897 27 C -0.130 4.130 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.383 0.617 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 -16.666 8.871 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.106 3.894 3 N -0.359 5.359 4 C -0.362 4.362 5 H 0.089 0.911 6 C -0.207 4.207 7 N -0.581 5.581 8 Si 0.733 3.267 9 H -0.206 1.206 10 H -0.220 1.220 11 H -0.220 1.220 12 C -0.174 4.174 13 C -0.001 4.001 14 N -0.319 5.319 15 C 0.359 3.641 16 O -0.419 6.419 17 C -0.148 4.148 18 C -0.113 4.113 19 C -0.227 4.227 20 C 0.469 3.531 21 F -0.157 7.157 22 F -0.157 7.157 23 F -0.158 7.158 24 C -0.101 4.101 25 C -0.112 4.112 26 C -0.020 4.020 27 C -0.169 4.169 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.944 -16.802 8.180 19.331 hybrid contribution -0.029 0.826 -0.153 0.841 sum 4.915 -15.976 8.027 18.543 Atomic orbital electron populations 1.22220 0.97553 0.99013 1.02178 1.19591 0.92177 0.86225 0.91403 1.42496 1.60730 1.05723 1.26922 1.19156 1.25345 0.91604 1.00142 0.91105 1.24682 1.00560 0.97359 0.98145 1.69648 1.39439 1.16734 1.32271 0.86206 0.77536 0.81228 0.81751 1.20625 1.22020 1.21983 1.22362 0.94729 0.99102 1.01174 1.21642 0.94516 0.99827 0.84066 1.47992 1.41605 1.33634 1.08647 1.18341 0.79082 0.79436 0.87283 1.90693 1.58416 1.60565 1.32246 1.23668 0.98756 0.98716 0.93690 1.24605 1.01772 0.92072 0.92824 1.25369 1.02337 1.02063 0.92939 1.18404 0.75192 0.75558 0.83949 1.93202 1.30660 1.95162 1.96698 1.93210 1.83216 1.81010 1.58217 1.93199 1.92926 1.32942 1.96756 1.23677 0.99754 0.98491 0.88206 1.24138 0.92335 1.01683 0.93058 1.21955 0.95055 1.00041 0.84907 1.22090 0.94502 1.00599 0.99695 0.93141 0.92502 0.94589 0.78227 0.93633 0.90581 0.93369 0.89270 0.90418 0.88846 0.88438 0.89155 0.89057 0.88433 0.89120 0.90440 0.89974 0.91779 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.44 37.16 0.31 -2.18 16 2 C 0.20 3.39 0.74 -131.62 -0.10 3.29 16 3 N -0.72 -15.53 4.13 -47.04 -0.19 -15.72 16 4 C -0.23 -5.76 8.68 -15.06 -0.13 -5.89 16 5 H 0.07 1.75 6.70 -52.48 -0.35 1.40 16 6 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 7 N -0.93 -26.31 13.06 55.49 0.72 -25.59 16 8 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 C -0.13 -2.23 4.73 -26.45 -0.13 -2.35 16 13 C 0.12 2.08 6.16 -3.71 -0.02 2.06 16 14 N -0.59 -8.89 2.97 -172.77 -0.51 -9.40 16 15 C 0.57 8.59 7.81 -10.99 -0.09 8.50 16 16 O -0.54 -9.95 16.51 5.56 0.09 -9.86 16 17 C -0.15 -1.59 2.45 -172.24 -0.42 -2.02 16 18 C -0.08 -0.70 7.54 -24.70 -0.19 -0.88 16 19 C -0.23 -1.99 3.03 -169.82 -0.51 -2.51 16 20 C 0.52 4.86 3.63 37.16 0.13 5.00 16 21 F -0.18 -1.74 17.32 2.25 0.04 -1.70 16 22 F -0.18 -1.72 17.32 2.25 0.04 -1.68 16 23 F -0.18 -1.71 17.32 2.25 0.04 -1.67 16 24 C -0.06 -0.61 7.78 -26.70 -0.21 -0.81 16 25 C -0.07 -0.65 7.37 -25.97 -0.19 -0.84 16 26 C 0.10 1.38 5.98 -3.71 -0.02 1.36 16 27 C -0.13 -1.80 4.96 -26.62 -0.13 -1.93 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.03 7.27 -51.93 -0.38 0.65 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.38 8.90 6.47 -40.82 -0.26 8.64 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.08 1.37 7.32 -51.93 -0.38 0.99 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.80 7.74 -51.93 -0.40 1.39 16 36 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 37 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 38 H 0.10 0.83 6.82 -51.93 -0.35 0.47 16 39 H 0.09 0.81 7.94 -51.93 -0.41 0.40 16 40 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 41 H 0.10 0.76 6.46 -51.93 -0.34 0.42 16 42 H 0.09 0.73 7.93 -51.93 -0.41 0.32 16 43 H 0.08 0.81 2.85 -51.93 -0.15 0.66 16 44 H 0.08 1.27 6.95 -51.93 -0.36 0.91 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -28.90 370.60 -7.23 -36.13 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.23 Total: 7.09 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.79 Total: 0.39 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.02 Total: -50.71 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.12 Total: -5.06 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.90 -7.23 -36.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755135825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.434 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds