Wall clock time and date at job start Wed Apr 1 2020 03:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.44367 * 2 1 4 4 C 1.36936 * 120.00067 * 299.96364 * 3 2 1 5 5 H 1.08006 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.38813 * 120.00072 * 180.02562 * 4 3 2 7 7 N 1.31618 * 119.99806 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00061 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46992 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47288 * 119.99655 * 8 6 4 11 11 H 1.48494 * 109.46842 * 239.99637 * 8 6 4 12 12 C 1.53346 * 109.41904 * 240.09494 * 2 1 3 13 13 C 1.53195 * 109.14901 * 178.67276 * 12 2 1 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 2 15 15 C 1.34778 * 120.63255 * 126.34238 * 14 13 12 16 16 O 1.21279 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00023 * 179.97438 * 15 14 13 18 18 C 1.54900 * 129.09200 * 299.93562 * 17 15 14 19 19 C 1.57174 * 77.91599 * 180.16830 * 18 17 15 20 20 C 1.52995 * 129.24760 * 179.19793 * 19 18 17 21 21 F 1.39896 * 109.46998 * 301.28500 * 20 19 18 22 22 F 1.39904 * 109.47287 * 61.28448 * 20 19 18 23 23 F 1.39901 * 109.46851 * 181.28186 * 20 19 18 24 24 C 1.54416 * 83.73152 * 42.47296 * 19 18 17 25 25 C 1.54890 * 129.09081 * 60.06566 * 17 15 14 26 26 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 27 27 C 1.53034 * 109.46014 * 119.96360 * 2 1 3 28 28 H 1.08997 * 109.47399 * 300.03371 * 1 2 3 29 29 H 1.08997 * 109.47115 * 60.03425 * 1 2 3 30 30 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 31 31 H 0.97004 * 119.99912 * 119.97242 * 3 2 1 32 32 H 0.97001 * 120.00033 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.68637 * 58.70485 * 12 2 1 34 34 H 1.09002 * 109.47277 * 298.50741 * 12 2 1 35 35 H 1.09002 * 109.58720 * 294.71670 * 13 12 2 36 36 H 1.08996 * 109.58651 * 174.43567 * 13 12 2 37 37 H 1.08998 * 114.97695 * 291.96240 * 18 17 15 38 38 H 1.08994 * 114.97365 * 67.13654 * 18 17 15 39 39 H 1.08993 * 114.92967 * 205.05412 * 24 19 18 40 40 H 1.08998 * 114.92629 * 70.03468 * 24 19 18 41 41 H 1.09002 * 114.97462 * 292.86018 * 25 17 15 42 42 H 1.08993 * 114.98283 * 68.03896 * 25 17 15 43 43 H 1.08994 * 109.58580 * 173.39910 * 26 14 13 44 44 H 1.09006 * 109.57831 * 293.67403 * 26 14 13 45 45 H 1.08994 * 109.50232 * 61.43679 * 27 2 1 46 46 H 1.09007 * 109.52628 * 301.35340 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0177 1.3815 0.0000 4 6 1.6871 2.2243 -1.0274 5 1 1.0665 1.8707 -1.8375 6 6 2.1497 3.5331 -1.0277 7 7 2.9055 3.9641 -0.0401 8 14 1.6981 4.6830 -2.4288 9 1 0.8448 3.9609 -3.4064 10 1 0.9554 5.8510 -1.8909 11 1 2.9354 5.1511 -3.1032 12 6 2.0399 -0.7210 -1.2537 13 6 3.5714 -0.6884 -1.2642 14 7 4.0679 -1.2486 0.0000 15 6 4.9622 -2.2570 0.0000 16 8 5.3644 -2.7109 -1.0502 17 6 5.4624 -2.8205 1.3051 18 6 6.2213 -2.1056 2.4507 19 6 6.1095 -3.5752 2.9969 20 6 6.6306 -4.1620 4.3102 21 9 8.0171 -3.9898 4.3802 22 9 6.0243 -3.5063 5.3871 23 9 6.3268 -5.5266 4.3643 24 6 6.4743 -3.9615 1.5471 25 6 4.6624 -3.4882 2.4512 26 6 3.5714 -0.6884 1.2643 27 6 2.0399 -0.7207 1.2501 28 1 -0.3634 0.5143 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3633 -1.0276 0.0005 31 1 2.5749 1.6991 0.7277 32 1 3.2285 4.8788 -0.0401 33 1 1.6592 -0.2219 -2.1447 34 1 1.6981 -1.7560 -1.2418 35 1 3.9143 0.3411 -1.3674 36 1 3.9438 -1.2828 -2.0985 37 1 7.2342 -1.7879 2.2037 38 1 5.6423 -1.3546 2.9879 39 1 6.1357 -4.9497 1.2359 40 1 7.5000 -3.7354 1.2557 41 1 3.9861 -2.8233 2.9885 42 1 4.2258 -4.4559 2.2047 43 1 3.9417 -1.2843 2.0984 44 1 3.9164 0.3403 1.3685 45 1 1.6979 -1.7555 1.2384 46 1 1.6572 -0.2211 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755135825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:03 Heat of formation + Delta-G solvation = -85.855288 kcal Electronic energy + Delta-G solvation = -32156.422551 eV Core-core repulsion = 27441.588882 eV Total energy + Delta-G solvation = -4714.833669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -51.07210 -48.62500 -48.60996 -43.37350 -40.79957 -39.04102 -36.05419 -34.14019 -32.20740 -30.90953 -29.59405 -28.83476 -27.06624 -26.98222 -25.91923 -25.71736 -24.15115 -23.39500 -21.40325 -20.26530 -19.40117 -19.39243 -19.26509 -18.99327 -18.41788 -17.55817 -16.61163 -16.39977 -16.22843 -15.74690 -15.65080 -15.56429 -15.47256 -15.30587 -15.18113 -15.04446 -14.95825 -14.77127 -14.76950 -14.64065 -14.41754 -14.09602 -13.51196 -13.22343 -12.91192 -12.89053 -12.79782 -12.72121 -12.65649 -12.58717 -12.49194 -12.33394 -12.13217 -12.03062 -11.77829 -11.57050 -11.50278 -11.38910 -11.13797 -10.85204 -10.77713 -9.64060 -8.87134 -7.86223 -5.10144 1.36777 1.47348 1.50310 1.53385 1.56832 1.95961 2.41782 2.52036 2.60966 2.72111 3.01850 3.19029 3.33163 3.47443 3.51656 3.59373 3.62977 3.83198 3.92147 4.11179 4.21240 4.29358 4.42600 4.45164 4.50120 4.53080 4.65548 4.68646 4.75652 4.78958 4.80279 4.80811 4.90488 4.98045 5.02948 5.07176 5.12233 5.19614 5.36226 5.38762 5.62645 5.64524 5.68952 6.37445 6.45015 7.09276 7.45301 8.22069 8.44888 9.37315 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002763 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.547961 B =10130.845848 C =10276.787595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.187 3.813 3 N -0.722 5.722 4 C -0.209 4.209 5 H 0.072 0.928 6 C -0.073 4.073 7 N -0.966 5.966 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.300 1.300 11 H -0.302 1.302 12 C -0.125 4.125 13 C 0.128 3.872 14 N -0.588 5.588 15 C 0.572 3.428 16 O -0.581 6.581 17 C -0.166 4.166 18 C -0.073 4.073 19 C -0.212 4.212 20 C 0.527 3.473 21 F -0.180 7.180 22 F -0.176 7.176 23 F -0.178 7.178 24 C -0.064 4.064 25 C -0.062 4.062 26 C 0.107 3.893 27 C -0.124 4.124 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.374 0.626 32 H 0.245 0.755 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 -18.844 10.317 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.097 3.903 3 N -0.363 5.363 4 C -0.341 4.341 5 H 0.090 0.910 6 C -0.265 4.265 7 N -0.618 5.618 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.228 1.228 11 H -0.230 1.230 12 C -0.165 4.165 13 C 0.005 3.995 14 N -0.319 5.319 15 C 0.360 3.640 16 O -0.462 6.462 17 C -0.169 4.169 18 C -0.110 4.110 19 C -0.214 4.214 20 C 0.473 3.527 21 F -0.162 7.162 22 F -0.158 7.158 23 F -0.159 7.159 24 C -0.101 4.101 25 C -0.099 4.099 26 C -0.015 4.015 27 C -0.162 4.162 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.208 0.792 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.083 -19.023 9.631 21.710 hybrid contribution 0.240 1.395 -0.632 1.550 sum 4.323 -17.628 9.000 20.259 Atomic orbital electron populations 1.22134 0.96576 1.00735 1.00902 1.19924 0.92770 0.84167 0.93400 1.42650 1.60503 1.07385 1.25726 1.19407 1.22900 0.91618 1.00179 0.91022 1.25254 1.02026 0.99029 1.00188 1.69767 1.41624 1.16427 1.34028 0.85378 0.76772 0.79585 0.79938 1.19452 1.22760 1.23030 1.22262 0.93997 1.00091 1.00156 1.21323 0.95036 0.97686 0.85406 1.48008 1.41791 1.33718 1.08335 1.18903 0.78054 0.78712 0.88308 1.90668 1.59545 1.61776 1.34222 1.23495 1.00675 1.00055 0.92654 1.24677 1.01848 0.92658 0.91842 1.25117 1.02568 1.01404 0.92297 1.18356 0.74951 0.75461 0.83908 1.93199 1.31073 1.95176 1.96714 1.93211 1.83205 1.81031 1.58332 1.93201 1.92906 1.33054 1.96758 1.23738 0.99442 0.98303 0.88640 1.24183 0.92233 1.02324 0.91204 1.22017 0.95050 0.99332 0.85127 1.22071 0.94381 1.01729 0.98058 0.93558 0.94633 0.91359 0.79240 0.94571 0.92397 0.91069 0.92983 0.91124 0.88780 0.87283 0.88480 0.89142 0.86766 0.87878 0.86890 0.92417 0.88933 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 8.44 71.98 0.61 -3.86 16 2 C 0.19 6.12 0.74 3.73 0.00 6.12 16 3 N -0.72 -31.26 4.13 -302.75 -1.25 -32.52 16 4 C -0.21 -10.47 8.68 84.03 0.73 -9.74 16 5 H 0.07 3.54 6.70 -2.91 -0.02 3.52 16 6 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 7 N -0.97 -55.95 13.06 21.65 0.28 -55.67 16 8 Si 0.95 44.99 29.55 68.60 2.03 47.01 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 C -0.12 -4.04 4.73 30.78 0.15 -3.90 16 13 C 0.13 4.45 6.16 86.36 0.53 4.99 16 14 N -0.59 -17.18 2.97 -818.91 -2.43 -19.62 16 15 C 0.57 16.51 7.81 87.66 0.68 17.20 16 16 O -0.58 -21.31 16.51 -3.03 -0.05 -21.36 16 17 C -0.17 -3.26 2.45 -63.67 -0.16 -3.41 16 18 C -0.07 -1.16 7.54 31.91 0.24 -0.92 16 19 C -0.21 -3.11 3.03 -62.10 -0.19 -3.30 16 20 C 0.53 8.37 3.63 71.98 0.26 8.63 16 21 F -0.18 -3.18 17.32 44.97 0.78 -2.41 16 22 F -0.18 -2.96 17.32 44.97 0.78 -2.18 16 23 F -0.18 -2.96 17.32 44.97 0.78 -2.18 16 24 C -0.06 -1.07 7.78 30.61 0.24 -0.83 16 25 C -0.06 -0.84 7.37 31.09 0.23 -0.61 16 26 C 0.11 2.64 5.98 86.36 0.52 3.15 16 27 C -0.12 -3.04 4.96 30.67 0.15 -2.89 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.03 1.23 7.27 -2.39 -0.02 1.21 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.37 17.56 6.47 -92.71 -0.60 16.96 16 32 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 33 H 0.06 2.07 7.32 -2.39 -0.02 2.05 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 2.19 7.74 -2.39 -0.02 2.17 16 36 H 0.07 2.53 7.00 -2.39 -0.02 2.52 16 37 H 0.09 1.50 7.91 -2.39 -0.02 1.48 16 38 H 0.11 1.49 6.82 -2.39 -0.02 1.47 16 39 H 0.10 1.50 7.94 -2.39 -0.02 1.49 16 40 H 0.09 1.53 7.91 -2.39 -0.02 1.51 16 41 H 0.11 1.19 6.46 -2.39 -0.02 1.17 16 42 H 0.10 1.21 7.93 -2.39 -0.02 1.19 16 43 H 0.11 1.97 2.85 -2.39 -0.01 1.96 16 44 H 0.06 1.75 6.95 -2.38 -0.02 1.74 16 45 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -63.95 370.60 5.81 -58.15 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.43 Total: 23.63 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.46 Total: 7.14 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.40 Total: -107.81 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 2.34 Total: -6.77 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.95 5.81 -58.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755135825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.706 kcal (2) G-P(sol) polarization free energy of solvation -63.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds