Wall clock time and date at job start Wed Apr 1 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 110.75293 * 2 1 4 4 C 1.54385 * 110.84583 * 123.47247 * 2 1 3 5 5 O 1.43237 * 107.59059 * 96.83230 * 4 2 1 6 6 C 1.43651 * 109.96906 * 358.28729 * 5 4 2 7 7 H 1.09000 * 110.30798 * 265.51162 * 6 5 4 8 8 C 1.52998 * 110.30559 * 143.44226 * 6 5 4 9 9 N 1.46894 * 109.47058 * 66.45437 * 8 6 5 10 10 C 1.46901 * 110.99930 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47384 * 324.99807 * 10 9 8 12 12 C 1.53006 * 109.47240 * 84.99941 * 10 9 8 13 13 O 1.42896 * 109.46872 * 65.00144 * 12 10 9 14 14 C 1.52994 * 109.47518 * 205.00100 * 10 9 8 15 15 N 1.46501 * 109.47108 * 54.99677 * 14 10 9 16 16 C 1.34780 * 119.99950 * 180.02562 * 15 14 10 17 17 O 1.21276 * 120.00205 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99724 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.46979 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99785 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99822 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99609 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99899 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00173 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47246 * 89.99726 * 24 22 20 26 26 H 1.48504 * 109.46873 * 209.99886 * 24 22 20 27 27 H 1.48502 * 109.47064 * 329.99550 * 24 22 20 28 28 C 1.55304 * 110.84902 * 236.52432 * 2 1 3 29 29 H 1.09001 * 109.47002 * 60.69954 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.70392 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.70220 * 1 2 3 32 32 H 1.09006 * 109.47254 * 59.29779 * 3 2 1 33 33 H 1.09003 * 109.47383 * 179.29807 * 3 2 1 34 34 H 1.09001 * 109.47218 * 299.29601 * 3 2 1 35 35 H 1.09000 * 109.82810 * 216.35006 * 4 2 1 36 36 H 1.09006 * 109.82797 * 337.22429 * 4 2 1 37 37 H 1.09001 * 109.46812 * 186.45116 * 8 6 5 38 38 H 1.09001 * 109.46957 * 306.45336 * 8 6 5 39 39 H 1.00892 * 111.00299 * 303.94989 * 9 8 6 40 40 H 1.08997 * 109.46746 * 185.00170 * 12 10 9 41 41 H 1.09001 * 109.46782 * 305.00346 * 12 10 9 42 42 H 0.96700 * 113.99941 * 180.02562 * 13 12 10 43 43 H 1.09000 * 109.47774 * 175.00097 * 14 10 9 44 44 H 1.09000 * 109.47136 * 295.00095 * 14 10 9 45 45 H 0.97004 * 120.00051 * 0.02562 * 15 14 10 46 46 H 1.09001 * 109.46992 * 300.00006 * 18 16 15 47 47 H 1.09000 * 109.46962 * 60.00048 * 18 16 15 48 48 H 0.97000 * 120.00106 * 180.02562 * 23 22 20 49 49 H 1.09004 * 111.12260 * 33.86322 * 28 2 1 50 50 H 1.09000 * 111.12372 * 158.02265 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0722 1.4307 0.0000 4 6 2.0795 -0.7958 1.2035 5 8 2.3853 -2.1179 0.7450 6 6 2.0402 -2.2477 -0.6433 7 1 1.0385 -2.6650 -0.7467 8 6 3.0600 -3.1322 -1.3635 9 7 2.9657 -4.5054 -0.8505 10 6 3.9322 -5.3853 -1.5211 11 1 4.0402 -5.0802 -2.5619 12 6 5.2870 -5.2853 -0.8171 13 8 5.1714 -5.7948 0.5129 14 6 3.4327 -6.8302 -1.4626 15 7 2.0840 -6.9040 -2.0300 16 6 1.4391 -8.0862 -2.0834 17 8 1.9750 -9.0890 -1.6613 18 6 0.0519 -8.1621 -2.6676 19 16 -0.5398 -9.8713 -2.5969 20 6 -2.1330 -9.6737 -3.3231 21 1 -2.4597 -8.6979 -3.6510 22 6 -2.9677 -10.7723 -3.4745 23 7 -4.1581 -10.6246 -4.0165 24 14 -2.4022 -12.4601 -2.9079 25 1 -2.7998 -12.6658 -1.4920 26 1 -3.0325 -13.5037 -3.7558 27 1 -0.9247 -12.5525 -3.0256 28 6 2.0828 -0.8005 -1.2106 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.7103 1.9564 0.8837 33 1 3.1619 1.4064 0.0126 34 1 1.7307 1.9487 -0.8962 35 1 2.9828 -0.3173 1.5818 36 1 1.3274 -0.8408 1.9913 37 1 2.8522 -3.1290 -2.4335 38 1 4.0641 -2.7465 -1.1871 39 1 3.0907 -4.5270 0.1504 40 1 6.0259 -5.8684 -1.3667 41 1 5.6013 -4.2422 -0.7806 42 1 5.9944 -5.7620 1.0196 43 1 4.1035 -7.4702 -2.0358 44 1 3.4093 -7.1649 -0.4255 45 1 1.6552 -6.1019 -2.3673 46 1 -0.6190 -7.5217 -2.0949 47 1 0.0758 -7.8281 -3.7048 48 1 -4.7416 -11.3923 -4.1221 49 1 1.4336 -0.6962 -2.0800 50 1 3.1037 -0.5005 -1.4468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755624853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:20 Heat of formation + Delta-G solvation = -145.720732 kcal Electronic energy + Delta-G solvation = -28294.031882 eV Core-core repulsion = 24253.902944 eV Total energy + Delta-G solvation = -4040.128937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.41403 -39.29419 -38.14778 -35.86908 -34.93605 -33.95768 -32.36832 -31.70524 -29.76608 -28.63709 -27.86337 -26.55744 -25.68963 -25.38814 -24.81553 -21.58663 -20.98498 -20.16866 -19.78028 -17.98303 -17.70169 -17.09769 -16.47238 -16.23433 -15.86509 -15.65162 -15.24735 -15.14048 -14.91751 -14.81538 -14.61065 -14.11712 -14.03853 -13.80377 -13.68255 -13.54507 -13.08474 -13.03960 -12.73265 -12.70757 -12.57887 -12.32349 -12.15254 -12.05657 -11.84845 -11.63369 -11.40780 -11.19893 -11.18795 -11.10167 -10.94319 -10.82747 -10.51875 -10.37103 -9.81910 -9.78615 -9.33770 -8.93558 -8.73273 -8.64002 -8.39831 -6.82229 -6.22230 -3.92520 2.89810 3.19395 3.36179 3.39014 3.45523 3.57119 3.65577 3.84142 3.87662 3.98764 4.26729 4.38000 4.40089 4.58104 4.64393 4.71832 4.73714 4.79495 4.83240 4.89742 4.97898 5.05135 5.12184 5.15817 5.16916 5.20156 5.21614 5.28056 5.34054 5.36912 5.44469 5.47818 5.53469 5.60342 5.66896 5.69532 5.77009 5.87746 5.91781 6.07312 6.15654 6.63087 6.71804 6.82040 7.18133 7.26573 7.91100 8.01214 8.48781 8.73081 9.24420 10.87069 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.002200 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.407804 B =12726.089943 C =14609.146545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.136 4.136 4 C 0.061 3.939 5 O -0.377 6.377 6 C 0.082 3.918 7 H 0.083 0.917 8 C 0.060 3.940 9 N -0.677 5.677 10 C 0.078 3.922 11 H 0.093 0.907 12 C 0.049 3.951 13 O -0.563 6.563 14 C 0.138 3.862 15 N -0.722 5.722 16 C 0.528 3.472 17 O -0.527 6.527 18 C -0.121 4.121 19 S -0.144 6.144 20 C -0.519 4.519 21 H 0.088 0.912 22 C 0.094 3.906 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 C -0.142 4.142 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.363 0.637 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.380 0.620 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.403 0.597 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.270 0.730 49 H 0.086 0.914 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.386 26.818 6.952 33.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.016 4.016 5 O -0.297 6.297 6 C 0.025 3.975 7 H 0.101 0.899 8 C -0.069 4.069 9 N -0.309 5.309 10 C -0.033 4.033 11 H 0.111 0.889 12 C -0.031 4.031 13 O -0.369 6.369 14 C 0.013 3.987 15 N -0.376 5.376 16 C 0.314 3.686 17 O -0.402 6.402 18 C -0.272 4.272 19 S 0.082 5.918 20 C -0.666 4.666 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.519 5.519 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.159 1.159 28 C -0.180 4.180 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.184 0.816 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.228 0.772 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.237 0.763 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.059 24.638 7.125 31.954 hybrid contribution 0.486 1.515 -0.065 1.592 sum 19.545 26.153 7.059 33.404 Atomic orbital electron populations 1.21847 0.93059 1.02612 1.02250 1.22117 0.96754 0.96196 0.95045 1.21755 1.00795 0.94474 1.02313 1.23227 0.99625 0.82787 0.95919 1.88411 1.85720 1.30439 1.25118 1.23145 0.98863 0.94293 0.81204 0.89925 1.22169 0.97155 0.88479 0.99109 1.60447 1.51659 1.07066 1.11774 1.21958 0.88999 0.94303 0.98022 0.88871 1.22788 0.98346 0.97534 0.84477 1.86510 1.38694 1.86317 1.25341 1.21110 0.83749 0.93786 1.00049 1.45733 1.17176 1.10346 1.64342 1.20222 0.87117 0.82910 0.78354 1.90685 1.67812 1.34970 1.46766 1.23257 0.95516 1.04512 1.03918 1.84770 1.19794 1.05179 1.82031 1.22339 0.98977 0.99423 1.45889 0.89436 1.24719 0.93964 0.99051 0.93676 1.69945 1.07930 1.31559 1.42493 0.86725 0.81933 0.83578 0.79562 1.19234 1.20054 1.15903 1.23469 1.02140 0.94241 0.98132 0.92083 0.91933 0.92171 0.92217 0.92380 0.92084 0.91569 0.91385 0.89801 0.94797 0.81639 0.92875 0.93519 0.77243 0.91778 0.90576 0.76264 0.88581 0.88720 0.92036 0.89581 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.44 37.16 0.31 -0.51 16 2 C -0.10 -0.58 0.94 -152.56 -0.14 -0.73 16 3 C -0.14 -0.61 8.51 37.16 0.32 -0.30 16 4 C 0.06 0.44 6.99 37.88 0.26 0.71 16 5 O -0.38 -3.62 10.66 -35.23 -0.38 -3.99 16 6 C 0.08 0.64 3.39 -25.40 -0.09 0.56 16 7 H 0.08 0.74 7.79 -51.93 -0.40 0.34 16 8 C 0.06 0.44 5.23 -3.83 -0.02 0.42 16 9 N -0.68 -6.23 5.69 -106.73 -0.61 -6.83 16 10 C 0.08 0.68 2.57 -67.71 -0.17 0.50 16 11 H 0.09 0.68 7.80 -51.93 -0.40 0.27 16 12 C 0.05 0.35 6.72 37.16 0.25 0.60 16 13 O -0.56 -4.81 12.05 -35.23 -0.42 -5.23 16 14 C 0.14 1.73 5.26 -4.04 -0.02 1.71 16 15 N -0.72 -10.28 5.39 -60.30 -0.32 -10.60 16 16 C 0.53 10.14 7.85 -10.98 -0.09 10.06 16 17 O -0.53 -12.18 15.86 5.56 0.09 -12.09 16 18 C -0.12 -2.49 6.16 36.01 0.22 -2.27 16 19 S -0.14 -3.80 18.55 -107.50 -1.99 -5.80 16 20 C -0.52 -15.34 10.04 30.94 0.31 -15.03 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 22 C 0.09 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -27.12 13.97 55.49 0.78 -26.35 16 24 Si 0.86 22.35 27.74 -169.99 -4.72 17.64 16 25 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.24 -6.13 6.74 56.52 0.38 -5.75 16 28 C -0.14 -0.82 5.57 -24.18 -0.13 -0.96 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.25 8.12 -51.93 -0.42 -0.17 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.43 7.80 -51.93 -0.40 0.03 16 36 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 37 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 38 H 0.03 0.24 7.36 -51.93 -0.38 -0.14 16 39 H 0.36 3.98 7.59 -39.30 -0.30 3.68 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.29 7.35 -51.93 -0.38 -0.09 16 42 H 0.38 1.64 9.12 45.56 0.42 2.06 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.14 7.39 -51.93 -0.38 0.76 16 45 H 0.40 4.85 8.14 -40.82 -0.33 4.52 16 46 H 0.10 1.87 8.14 -51.91 -0.42 1.44 16 47 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 48 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 49 H 0.09 0.44 8.04 -51.93 -0.42 0.02 16 50 H 0.08 0.41 7.97 -51.93 -0.41 0.00 16 LS Contribution 413.41 15.07 6.23 6.23 Total: -1.00 -36.11 413.41 -8.44 -44.55 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.01 Total: 4.99 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 0.91 Total: -2.51 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.16 Total: -43.78 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.71 Total: -21.32 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.72 Total: 17.64 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.99 Total: -5.80 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.11 -8.44 -44.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755624853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.174 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds