Wall clock time and date at job start Wed Apr 1 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 110.82438 * 2 1 4 4 C 1.54992 * 110.90734 * 236.35398 * 2 1 3 5 5 O 1.44730 * 103.51596 * 204.74247 * 4 2 1 6 6 C 1.43750 * 106.78766 * 40.07842 * 5 4 2 7 7 H 1.09002 * 109.87972 * 92.95455 * 6 5 4 8 8 C 1.53005 * 109.87787 * 213.95602 * 6 5 4 9 9 N 1.46891 * 109.47090 * 298.28937 * 8 6 5 10 10 C 1.46897 * 110.99937 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.47458 * 35.00154 * 10 9 8 12 12 C 1.52999 * 109.47187 * 274.99803 * 10 9 8 13 13 O 1.42900 * 109.47536 * 295.00115 * 12 10 9 14 14 C 1.53003 * 109.47243 * 155.00469 * 10 9 8 15 15 N 1.46503 * 109.46772 * 304.99821 * 14 10 9 16 16 C 1.34781 * 119.99983 * 180.02562 * 15 14 10 17 17 O 1.21278 * 120.00118 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99719 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.46815 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00218 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99385 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99983 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00399 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99601 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47238 * 90.00076 * 24 22 20 26 26 H 1.48500 * 109.47123 * 209.99887 * 24 22 20 27 27 H 1.48504 * 109.47505 * 330.00041 * 24 22 20 28 28 C 1.54103 * 107.41924 * 333.45515 * 6 5 4 29 29 H 1.08998 * 109.47266 * 296.34881 * 1 2 3 30 30 H 1.08994 * 109.47202 * 56.35725 * 1 2 3 31 31 H 1.09003 * 109.46866 * 176.35089 * 1 2 3 32 32 H 1.09002 * 109.46437 * 183.64463 * 3 2 1 33 33 H 1.08997 * 109.47192 * 303.63937 * 3 2 1 34 34 H 1.08993 * 109.47462 * 63.64741 * 3 2 1 35 35 H 1.08994 * 110.61694 * 323.27236 * 4 2 1 36 36 H 1.09000 * 110.62133 * 86.27911 * 4 2 1 37 37 H 1.08995 * 109.46998 * 58.29169 * 8 6 5 38 38 H 1.09001 * 109.46604 * 178.29065 * 8 6 5 39 39 H 1.00907 * 111.00065 * 56.04608 * 9 8 6 40 40 H 1.09000 * 109.47148 * 55.00335 * 12 10 9 41 41 H 1.09001 * 109.47128 * 174.99649 * 12 10 9 42 42 H 0.96704 * 114.00178 * 179.97438 * 13 12 10 43 43 H 1.08994 * 109.47706 * 64.99495 * 14 10 9 44 44 H 1.08998 * 109.47437 * 185.00075 * 14 10 9 45 45 H 0.96998 * 120.00291 * 359.97438 * 15 14 10 46 46 H 1.08997 * 109.47152 * 299.99033 * 18 16 15 47 47 H 1.09001 * 109.47658 * 59.99709 * 18 16 15 48 48 H 0.97000 * 120.00491 * 180.02562 * 23 22 20 49 49 H 1.08992 * 110.48760 * 120.78290 * 28 6 5 50 50 H 1.09007 * 110.48607 * 243.42972 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0740 1.4301 0.0000 4 6 2.0832 -0.8022 -1.2053 5 8 3.3978 -1.2149 -0.7624 6 6 3.2719 -1.5881 0.6201 7 1 3.0827 -2.6587 0.6993 8 6 4.5537 -1.2294 1.3746 9 7 5.6823 -1.9785 0.8065 10 6 6.9327 -1.6591 1.5081 11 1 6.7236 -1.4896 2.5644 12 6 7.5499 -0.3974 0.9015 13 8 7.9310 -0.6565 -0.4512 14 6 7.9115 -2.8261 1.3628 15 7 7.2753 -4.0586 1.8346 16 6 7.9540 -5.2226 1.8017 17 8 9.0912 -5.2498 1.3811 18 6 7.2994 -6.4904 2.2865 19 16 8.4573 -7.8709 2.1148 20 6 7.4614 -9.1848 2.7368 21 1 6.4555 -8.9858 3.0761 22 6 7.9700 -10.4751 2.7916 23 7 9.1960 -10.7174 2.3786 24 14 6.9138 -11.8680 3.4504 25 1 6.1517 -12.4821 2.3336 26 1 7.7839 -12.8941 4.0791 27 1 5.9663 -11.3351 4.4621 28 6 2.0825 -0.8012 1.2039 29 1 -0.3634 0.4561 0.9209 30 1 -0.3633 0.5693 -0.8555 31 1 -0.3633 -1.0256 -0.0654 32 1 3.1618 1.4049 -0.0653 33 1 1.6711 1.9720 -0.8555 34 1 1.7768 1.9318 0.9208 35 1 1.4563 -1.6704 -1.4087 36 1 2.1583 -0.1665 -2.0876 37 1 4.7433 -0.1602 1.2809 38 1 4.4396 -1.4873 2.4275 39 1 5.7688 -1.8061 -0.1840 40 1 6.8198 0.4115 0.9247 41 1 8.4291 -0.1098 1.4780 42 1 8.3303 0.1017 -0.8994 43 1 8.1895 -2.9389 0.3150 44 1 8.8040 -2.6278 1.9562 45 1 6.3659 -4.0368 2.1714 46 1 7.0207 -6.3777 3.3342 47 1 6.4072 -6.6888 1.6925 48 1 9.5513 -11.6192 2.4166 49 1 1.3247 -1.4842 1.5877 50 1 2.4209 -0.1252 1.9892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755624854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:23 Heat of formation + Delta-G solvation = -175.444677 kcal Electronic energy + Delta-G solvation = -28326.504230 eV Core-core repulsion = 24285.086366 eV Total energy + Delta-G solvation = -4041.417864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98715 -40.56152 -38.99106 -36.52465 -35.55182 -34.96610 -34.56810 -32.55545 -30.98196 -29.52433 -28.23888 -27.68543 -27.03792 -26.34474 -25.41377 -22.15425 -21.80332 -21.55783 -20.32222 -19.78342 -18.58990 -17.72829 -17.41067 -17.31014 -16.86724 -16.61580 -16.59795 -16.47405 -16.02471 -15.73617 -15.46225 -15.24396 -14.93965 -14.68035 -14.47730 -14.45317 -14.27673 -13.83698 -13.71845 -13.60737 -13.20072 -13.14765 -13.13040 -12.87665 -12.74513 -12.68185 -12.55507 -12.46025 -12.31212 -12.11521 -11.71155 -11.63186 -11.55448 -11.41579 -11.12903 -10.97668 -10.86986 -10.52238 -10.25386 -9.98176 -9.34743 -8.64884 -8.32806 -6.10954 1.28931 1.43603 1.48699 1.59559 1.69334 2.28510 2.38680 2.86294 3.00835 3.11575 3.35931 3.45944 3.50668 3.81059 3.84006 3.91552 3.96586 4.11479 4.15869 4.24181 4.29137 4.32264 4.36998 4.40872 4.50325 4.53371 4.60388 4.67972 4.71023 4.73009 4.79683 4.80647 4.86246 4.91989 4.99174 5.04922 5.04954 5.14777 5.25078 5.31761 5.42040 5.43132 5.53948 5.95450 6.10875 6.21575 6.41635 6.64124 6.87653 7.07910 7.35095 8.76552 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.002121 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.721921 B =13200.033012 C =15066.763184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.131 4.131 4 C 0.049 3.951 5 O -0.393 6.393 6 C 0.075 3.925 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.687 5.687 10 C 0.086 3.914 11 H 0.116 0.884 12 C 0.052 3.948 13 O -0.588 6.588 14 C 0.138 3.862 15 N -0.697 5.697 16 C 0.529 3.471 17 O -0.574 6.574 18 C -0.126 4.126 19 S -0.153 6.153 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.257 1.257 28 C -0.138 4.138 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.352 0.648 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.396 0.604 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.416 0.584 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.271 0.729 49 H 0.084 0.916 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.455 31.269 -1.512 36.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.188 4.188 4 C -0.028 4.028 5 O -0.312 6.312 6 C 0.017 3.983 7 H 0.080 0.920 8 C -0.063 4.063 9 N -0.319 5.319 10 C -0.025 4.025 11 H 0.134 0.866 12 C -0.028 4.028 13 O -0.397 6.397 14 C 0.014 3.986 15 N -0.350 5.350 16 C 0.315 3.685 17 O -0.453 6.453 18 C -0.277 4.277 19 S 0.074 5.926 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.181 1.181 28 C -0.176 4.176 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.171 0.829 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.246 0.754 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.253 0.747 46 H 0.128 0.872 47 H 0.123 0.877 48 H 0.080 0.920 49 H 0.102 0.898 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.621 29.991 -1.840 34.833 hybrid contribution -1.465 0.382 0.258 1.536 sum -19.086 30.373 -1.582 35.907 Atomic orbital electron populations 1.21746 0.92409 1.02309 1.02804 1.22100 0.96872 0.96217 0.94431 1.21728 1.00564 0.94052 1.02494 1.23828 0.83716 0.97597 0.97638 1.88940 1.30071 1.86404 1.25818 1.22827 0.95162 0.98579 0.81710 0.91995 1.22266 0.89053 0.96044 0.98966 1.60400 1.02669 1.59822 1.09037 1.21921 0.89306 0.91637 0.99639 0.86644 1.22789 0.99550 0.96850 0.83583 1.86481 1.83774 1.43268 1.26128 1.21201 0.95163 0.83128 0.99126 1.45545 1.18319 1.06203 1.64901 1.20083 0.85707 0.85183 0.77553 1.90674 1.20185 1.86631 1.47802 1.23337 1.03308 0.95581 1.05484 1.85577 1.22270 1.00138 1.84610 1.23203 1.02462 0.94828 1.48803 0.89960 1.26164 0.96788 1.01248 0.95146 1.70190 1.16706 1.22334 1.45592 0.84925 0.77722 0.76540 0.78596 1.19347 1.20210 1.18115 1.23082 0.96940 0.99201 0.98351 0.91475 0.91796 0.92379 0.93275 0.92030 0.91542 0.92219 0.88854 0.94079 0.88480 0.82881 0.91820 0.91745 0.75368 0.93345 0.92084 0.74684 0.87239 0.87713 0.92009 0.89770 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.55 71.98 0.62 -0.35 16 2 C -0.10 -0.91 0.99 -50.88 -0.05 -0.96 16 3 C -0.13 -1.11 8.53 71.98 0.61 -0.50 16 4 C 0.05 0.65 6.63 72.66 0.48 1.13 16 5 O -0.39 -7.27 10.62 -148.98 -1.58 -8.86 16 6 C 0.08 1.09 3.68 30.97 0.11 1.21 16 7 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 8 C 0.07 0.84 5.00 86.31 0.43 1.27 16 9 N -0.69 -12.19 5.69 -491.59 -2.80 -14.98 16 10 C 0.09 1.41 2.57 44.92 0.12 1.52 16 11 H 0.12 1.40 7.80 -2.39 -0.02 1.38 16 12 C 0.05 0.69 6.71 71.98 0.48 1.17 16 13 O -0.59 -10.05 12.05 -148.98 -1.80 -11.85 16 14 C 0.14 3.59 5.26 86.38 0.45 4.04 16 15 N -0.70 -20.27 5.39 -463.06 -2.50 -22.77 16 16 C 0.53 21.50 7.85 87.66 0.69 22.19 16 17 O -0.57 -28.88 15.86 -3.02 -0.05 -28.93 16 18 C -0.13 -5.36 6.16 71.23 0.44 -4.93 16 19 S -0.15 -8.89 20.57 -56.49 -1.16 -10.05 16 20 C -0.55 -32.10 9.50 67.95 0.65 -31.45 16 21 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 22 C 0.01 0.65 5.49 84.86 0.47 1.11 16 23 N -0.91 -57.34 13.22 21.65 0.29 -57.05 16 24 Si 1.00 44.58 29.55 68.60 2.03 46.61 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 28 C -0.14 -1.33 5.81 31.58 0.18 -1.15 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.44 8.09 -2.39 -0.02 0.42 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.79 8.01 -2.39 -0.02 0.78 16 36 H 0.09 1.12 8.05 -2.39 -0.02 1.10 16 37 H 0.04 0.48 7.36 -2.39 -0.02 0.46 16 38 H 0.10 0.95 8.05 -2.39 -0.02 0.93 16 39 H 0.35 7.79 7.41 -89.69 -0.66 7.12 16 40 H 0.06 0.64 7.35 -2.39 -0.02 0.62 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.40 3.35 9.12 -74.05 -0.68 2.68 16 43 H 0.05 1.56 7.39 -2.39 -0.02 1.54 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.42 9.75 8.14 -92.71 -0.75 8.99 16 46 H 0.11 4.16 8.14 -2.40 -0.02 4.14 16 47 H 0.10 4.12 8.14 -2.40 -0.02 4.11 16 48 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 49 H 0.08 0.74 7.86 -2.39 -0.02 0.72 16 50 H 0.09 0.67 7.42 -2.38 -0.02 0.66 16 Total: -1.00 -81.95 416.61 -3.03 -84.98 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -1.15 Total: 28.58 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 5.68 Total: -5.69 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -5.01 Total: -94.80 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -3.43 Total: -49.63 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -81.95 -3.03 -84.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755624854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.460 kcal (2) G-P(sol) polarization free energy of solvation -81.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds