Wall clock time and date at job start Wed Apr 1 2020 03:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47084 * 2 1 4 4 C 1.53003 * 109.46941 * 240.00070 * 2 1 3 5 5 C 1.52998 * 109.47129 * 119.99945 * 2 1 3 6 6 H 1.08998 * 109.12802 * 294.90358 * 5 2 1 7 7 N 1.45760 * 109.29854 * 175.41662 * 5 2 1 8 8 C 1.33347 * 124.10314 * 220.61403 * 7 5 2 9 9 O 1.21283 * 118.24296 * 182.24984 * 8 7 5 10 10 C 1.50179 * 123.51349 * 2.22729 * 8 7 5 11 11 C 1.53075 * 109.88919 * 342.41455 * 10 8 7 12 12 C 1.52921 * 109.30003 * 54.38426 * 5 2 1 13 13 H 1.09002 * 109.73983 * 290.90251 * 12 5 2 14 14 N 1.46503 * 109.60454 * 51.30275 * 12 5 2 15 15 S 1.65595 * 120.00117 * 211.07253 * 14 12 5 16 16 O 1.42102 * 104.27711 * 177.93042 * 15 14 12 17 17 O 1.42099 * 104.27918 * 305.78484 * 15 14 12 18 18 C 1.81397 * 104.45149 * 61.86078 * 15 14 12 19 19 C 1.52995 * 109.47695 * 180.99098 * 18 15 14 20 20 C 1.52996 * 109.47239 * 179.97438 * 19 18 15 21 21 C 1.50708 * 109.46863 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00156 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99686 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00454 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99714 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47365 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47118 * 119.99973 * 25 23 21 28 28 H 1.48499 * 109.47168 * 239.99881 * 25 23 21 29 29 H 1.08996 * 109.47205 * 306.26987 * 1 2 3 30 30 H 1.09005 * 109.47257 * 66.26792 * 1 2 3 31 31 H 1.08995 * 109.47301 * 186.27047 * 1 2 3 32 32 H 1.09000 * 109.47190 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46865 * 300.00083 * 3 2 1 34 34 H 1.09000 * 109.47053 * 60.00246 * 3 2 1 35 35 H 1.08999 * 109.47111 * 318.57408 * 4 2 1 36 36 H 1.09005 * 109.46656 * 78.57499 * 4 2 1 37 37 H 1.08999 * 109.46901 * 198.57268 * 4 2 1 38 38 H 0.96998 * 117.94258 * 40.61426 * 7 5 2 39 39 H 1.09001 * 109.40083 * 222.29026 * 10 8 7 40 40 H 1.08998 * 109.33302 * 102.50414 * 10 8 7 41 41 H 1.08995 * 109.67631 * 289.16798 * 11 10 8 42 42 H 1.09002 * 109.66991 * 168.63548 * 11 10 8 43 43 H 0.97005 * 119.99662 * 31.08046 * 14 12 5 44 44 H 1.09003 * 109.46630 * 300.98920 * 18 15 14 45 45 H 1.08999 * 109.47151 * 60.98330 * 18 15 14 46 46 H 1.09001 * 109.46580 * 300.00019 * 19 18 15 47 47 H 1.09003 * 109.46985 * 59.99226 * 19 18 15 48 48 H 1.08991 * 109.47530 * 299.99839 * 20 19 18 49 49 H 1.08998 * 109.47103 * 60.00509 * 20 19 18 50 50 H 0.96996 * 119.99984 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.7502 -0.1529 2.1331 7 7 3.4935 -0.8150 1.1917 8 6 4.1882 -1.8929 1.5573 9 8 5.3988 -1.8405 1.5047 10 6 3.5520 -3.1681 2.0311 11 6 2.1005 -2.9052 2.4402 12 6 1.4161 -2.1157 1.3179 13 1 0.3497 -2.0319 1.5275 14 7 1.6130 -2.8058 0.0407 15 16 0.4923 -3.9040 -0.4885 16 8 0.9820 -4.3216 -1.7555 17 8 0.3670 -4.8233 0.5877 18 6 -1.0313 -2.9386 -0.6818 19 6 -2.1617 -3.8577 -1.1489 20 6 -3.4468 -3.0435 -1.3112 21 6 -4.5602 -3.9487 -1.7720 22 1 -4.3700 -4.9995 -1.9332 23 6 -5.8212 -3.4352 -1.9885 24 7 -6.0527 -2.1555 -1.7926 25 14 -7.2010 -4.5571 -2.5603 26 1 -6.6849 -5.9419 -2.7058 27 1 -8.2991 -4.5401 -1.5608 28 1 -7.7158 -4.0811 -3.8693 29 1 -0.3633 0.6079 0.8285 30 1 -0.3634 0.4136 -0.9408 31 1 -0.3633 -1.0215 0.1122 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.4346 -1.6098 -1.4284 36 1 1.9691 -0.0540 -2.1083 37 1 3.0795 -1.0136 -1.1011 38 1 3.9861 -0.0450 0.8672 39 1 4.1056 -3.5524 2.8877 40 1 3.5739 -3.9029 1.2264 41 1 2.0786 -2.3253 3.3629 42 1 1.5840 -3.8533 2.5898 43 1 2.4001 -2.6194 -0.4949 44 1 -1.3001 -2.4889 0.2741 45 1 -0.8725 -2.1533 -1.4208 46 1 -1.8928 -4.3073 -2.1047 47 1 -2.3204 -4.6430 -0.4098 48 1 -3.7155 -2.5941 -0.3553 49 1 -3.2884 -2.2581 -2.0502 50 1 -6.9400 -1.7943 -1.9446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352388708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:29 Heat of formation + Delta-G solvation = -111.575819 kcal Electronic energy + Delta-G solvation = -31088.040658 eV Core-core repulsion = 27049.392355 eV Total energy + Delta-G solvation = -4038.648303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44216 -38.64337 -37.05386 -35.92490 -35.67511 -34.80649 -34.05749 -32.28256 -31.98268 -29.20363 -28.16592 -27.44842 -27.17769 -24.92020 -23.80262 -22.70379 -20.80439 -19.94585 -19.70060 -19.11081 -17.89913 -17.39858 -16.73649 -16.50600 -16.03492 -15.90831 -15.59515 -15.34498 -15.08980 -14.51859 -14.50758 -14.30692 -14.08722 -13.91526 -13.75112 -13.53073 -12.75692 -12.65373 -12.42488 -12.29921 -12.16637 -12.10884 -12.02770 -11.90769 -11.89333 -11.79283 -11.71057 -11.49911 -11.33101 -11.21331 -11.10160 -10.98420 -10.93243 -10.69946 -10.45464 -10.03728 -10.02530 -9.60409 -9.39545 -9.32963 -9.13980 -8.46050 -6.11030 -4.13936 0.31560 2.39125 2.66279 2.95812 3.25831 3.33888 3.38466 3.76967 4.01077 4.08809 4.21185 4.25732 4.38192 4.50043 4.53073 4.62281 4.70318 4.83142 4.95461 5.00081 5.06401 5.09181 5.13572 5.25866 5.29132 5.38480 5.44826 5.50901 5.52450 5.61343 5.65714 5.68122 5.76415 5.78638 5.81130 5.92904 6.01276 6.09400 6.17568 6.35248 6.47292 6.70532 6.79402 7.02599 7.50632 7.60042 7.86949 7.93857 8.27191 8.92434 9.51294 11.00055 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.003067 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.557957 B = 9126.309546 C = 9997.254610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.158 4.158 5 C 0.145 3.855 6 H 0.092 0.908 7 N -0.712 5.712 8 C 0.520 3.480 9 O -0.560 6.560 10 C -0.132 4.132 11 C -0.145 4.145 12 C 0.142 3.858 13 H 0.108 0.892 14 N -1.121 6.121 15 S 2.591 3.409 16 O -0.960 6.960 17 O -0.957 6.957 18 C -0.614 4.614 19 C -0.105 4.105 20 C 0.032 3.968 21 C -0.526 4.526 22 H 0.058 0.942 23 C 0.058 3.942 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.271 1.271 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.399 0.601 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.421 0.579 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.021 0.979 49 H 0.021 0.979 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.087 7.088 8.032 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.216 4.216 5 C 0.039 3.961 6 H 0.109 0.891 7 N -0.365 5.365 8 C 0.307 3.693 9 O -0.439 6.439 10 C -0.172 4.172 11 C -0.184 4.184 12 C 0.033 3.967 13 H 0.126 0.874 14 N -0.883 5.883 15 S 2.687 3.313 16 O -0.950 6.950 17 O -0.946 6.946 18 C -0.746 4.746 19 C -0.144 4.144 20 C -0.006 4.006 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.143 4.143 24 N -0.533 5.533 25 Si 0.720 3.280 26 H -0.196 1.196 27 H -0.209 1.209 28 H -0.210 1.210 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.236 0.764 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.260 0.740 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.039 0.961 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.520 6.066 8.046 20.212 hybrid contribution -0.757 0.640 -0.657 1.189 sum 16.764 6.706 7.389 19.509 Atomic orbital electron populations 1.22280 0.92796 1.03384 1.03444 1.20854 0.96882 0.95453 0.94401 1.21937 1.00593 0.94941 1.02702 1.22428 1.01227 1.01192 0.96757 1.21323 0.79888 0.95785 0.99139 0.89066 1.45626 1.07271 1.17147 1.66455 1.20309 0.87159 0.85349 0.76437 1.90767 1.14579 1.83560 1.54973 1.21555 0.96544 0.95227 1.03849 1.22262 0.95217 1.03036 0.97877 1.21132 1.01044 0.90761 0.83717 0.87386 1.56405 1.39149 1.62552 1.30222 1.05624 0.76427 0.74961 0.74240 1.93599 1.78526 1.80125 1.42783 1.93576 1.86436 1.59545 1.55089 1.30771 1.18259 1.14492 1.11029 1.21507 0.95027 0.97262 1.00598 1.19050 0.89066 0.94952 0.97542 1.21284 0.94386 0.95352 1.45440 0.92344 1.25004 0.98811 0.95083 0.95400 1.69956 1.22024 1.12137 1.49233 0.86520 0.82016 0.81032 0.78385 1.19592 1.20933 1.20950 0.91802 0.91190 0.91385 0.92869 0.91740 0.92167 0.91352 0.92174 0.92189 0.76374 0.88015 0.88006 0.89989 0.88212 0.73976 0.85149 0.84787 0.91599 0.91495 0.96084 0.96092 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 7.89 37.16 0.29 -0.89 16 2 C -0.08 -0.48 0.59 -154.51 -0.09 -0.57 16 3 C -0.14 -0.80 8.24 37.16 0.31 -0.49 16 4 C -0.16 -1.21 6.92 37.16 0.26 -0.95 16 5 C 0.15 0.88 2.25 -68.37 -0.15 0.73 16 6 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 7 N -0.71 -5.26 3.76 -54.85 -0.21 -5.46 16 8 C 0.52 5.26 7.36 -11.87 -0.09 5.17 16 9 O -0.56 -8.00 17.78 5.55 0.10 -7.90 16 10 C -0.13 -1.14 5.59 -28.10 -0.16 -1.30 16 11 C -0.14 -1.07 5.73 -26.52 -0.15 -1.22 16 12 C 0.14 1.04 1.72 -67.79 -0.12 0.92 16 13 H 0.11 0.65 5.72 -51.93 -0.30 0.35 16 14 N -1.12 -10.29 2.04 -4.77 -0.01 -10.30 16 15 S 2.59 33.70 4.92 -107.50 -0.53 33.18 16 16 O -0.96 -15.71 18.08 -57.54 -1.04 -16.75 16 17 O -0.96 -14.69 17.04 -57.54 -0.98 -15.67 16 18 C -0.61 -8.16 4.20 37.16 0.16 -8.00 16 19 C -0.10 -1.94 5.16 -26.74 -0.14 -2.08 16 20 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 21 C -0.53 -14.24 9.11 -34.44 -0.31 -14.55 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 25 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.52 2.02 -51.93 -0.11 0.42 16 32 H 0.05 0.27 6.66 -51.93 -0.35 -0.08 16 33 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.57 4.89 -51.93 -0.25 0.32 16 36 H 0.06 0.45 8.00 -51.93 -0.42 0.03 16 37 H 0.06 0.46 6.24 -51.93 -0.32 0.13 16 38 H 0.40 2.79 7.01 -40.82 -0.29 2.50 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 0.94 7.77 -51.93 -0.40 0.53 16 41 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 42 H 0.10 0.86 7.38 -51.93 -0.38 0.47 16 43 H 0.42 3.69 5.39 -34.47 -0.19 3.50 16 44 H 0.13 1.42 6.10 -51.92 -0.32 1.11 16 45 H 0.13 1.58 7.38 -51.92 -0.38 1.20 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -35.40 383.11 -9.50 -44.90 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.89 Total: 2.23 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.43 Total: -21.10 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.52 Total: -40.64 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.92 Total: -40.33 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 33.70 SS G_CDS: -0.53 Total: 33.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.40 -9.50 -44.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352388708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.672 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds