Wall clock time and date at job start Wed Apr 1 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47084 * 2 1 4 4 C 1.53003 * 109.46941 * 240.00070 * 2 1 3 5 5 C 1.52998 * 109.47129 * 119.99945 * 2 1 3 6 6 H 1.08998 * 109.12802 * 294.90358 * 5 2 1 7 7 N 1.45760 * 109.29854 * 175.41662 * 5 2 1 8 8 C 1.33347 * 124.10314 * 220.61403 * 7 5 2 9 9 O 1.21283 * 118.24296 * 182.24984 * 8 7 5 10 10 C 1.50179 * 123.51349 * 2.22729 * 8 7 5 11 11 C 1.53075 * 109.88919 * 342.41455 * 10 8 7 12 12 C 1.52921 * 109.30003 * 54.38426 * 5 2 1 13 13 H 1.09002 * 109.73983 * 290.90251 * 12 5 2 14 14 N 1.46503 * 109.60454 * 51.30275 * 12 5 2 15 15 S 1.65595 * 120.00117 * 211.07253 * 14 12 5 16 16 O 1.42102 * 104.27711 * 177.93042 * 15 14 12 17 17 O 1.42099 * 104.27918 * 305.78484 * 15 14 12 18 18 C 1.81397 * 104.45149 * 61.86078 * 15 14 12 19 19 C 1.52995 * 109.47695 * 180.99098 * 18 15 14 20 20 C 1.52996 * 109.47239 * 179.97438 * 19 18 15 21 21 C 1.50708 * 109.46863 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00156 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99686 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00454 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99714 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47365 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47118 * 119.99973 * 25 23 21 28 28 H 1.48499 * 109.47168 * 239.99881 * 25 23 21 29 29 H 1.08996 * 109.47205 * 306.26987 * 1 2 3 30 30 H 1.09005 * 109.47257 * 66.26792 * 1 2 3 31 31 H 1.08995 * 109.47301 * 186.27047 * 1 2 3 32 32 H 1.09000 * 109.47190 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46865 * 300.00083 * 3 2 1 34 34 H 1.09000 * 109.47053 * 60.00246 * 3 2 1 35 35 H 1.08999 * 109.47111 * 318.57408 * 4 2 1 36 36 H 1.09005 * 109.46656 * 78.57499 * 4 2 1 37 37 H 1.08999 * 109.46901 * 198.57268 * 4 2 1 38 38 H 0.96998 * 117.94258 * 40.61426 * 7 5 2 39 39 H 1.09001 * 109.40083 * 222.29026 * 10 8 7 40 40 H 1.08998 * 109.33302 * 102.50414 * 10 8 7 41 41 H 1.08995 * 109.67631 * 289.16798 * 11 10 8 42 42 H 1.09002 * 109.66991 * 168.63548 * 11 10 8 43 43 H 0.97005 * 119.99662 * 31.08046 * 14 12 5 44 44 H 1.09003 * 109.46630 * 300.98920 * 18 15 14 45 45 H 1.08999 * 109.47151 * 60.98330 * 18 15 14 46 46 H 1.09001 * 109.46580 * 300.00019 * 19 18 15 47 47 H 1.09003 * 109.46985 * 59.99226 * 19 18 15 48 48 H 1.08991 * 109.47530 * 299.99839 * 20 19 18 49 49 H 1.08998 * 109.47103 * 60.00509 * 20 19 18 50 50 H 0.96996 * 119.99984 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.7502 -0.1529 2.1331 7 7 3.4935 -0.8150 1.1917 8 6 4.1882 -1.8929 1.5573 9 8 5.3988 -1.8405 1.5047 10 6 3.5520 -3.1681 2.0311 11 6 2.1005 -2.9052 2.4402 12 6 1.4161 -2.1157 1.3179 13 1 0.3497 -2.0319 1.5275 14 7 1.6130 -2.8058 0.0407 15 16 0.4923 -3.9040 -0.4885 16 8 0.9820 -4.3216 -1.7555 17 8 0.3670 -4.8233 0.5877 18 6 -1.0313 -2.9386 -0.6818 19 6 -2.1617 -3.8577 -1.1489 20 6 -3.4468 -3.0435 -1.3112 21 6 -4.5602 -3.9487 -1.7720 22 1 -4.3700 -4.9995 -1.9332 23 6 -5.8212 -3.4352 -1.9885 24 7 -6.0527 -2.1555 -1.7926 25 14 -7.2010 -4.5571 -2.5603 26 1 -6.6849 -5.9419 -2.7058 27 1 -8.2991 -4.5401 -1.5608 28 1 -7.7158 -4.0811 -3.8693 29 1 -0.3633 0.6079 0.8285 30 1 -0.3634 0.4136 -0.9408 31 1 -0.3633 -1.0215 0.1122 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.4346 -1.6098 -1.4284 36 1 1.9691 -0.0540 -2.1083 37 1 3.0795 -1.0136 -1.1011 38 1 3.9861 -0.0450 0.8672 39 1 4.1056 -3.5524 2.8877 40 1 3.5739 -3.9029 1.2264 41 1 2.0786 -2.3253 3.3629 42 1 1.5840 -3.8533 2.5898 43 1 2.4001 -2.6194 -0.4949 44 1 -1.3001 -2.4889 0.2741 45 1 -0.8725 -2.1533 -1.4208 46 1 -1.8928 -4.3073 -2.1047 47 1 -2.3204 -4.6430 -0.4098 48 1 -3.7155 -2.5941 -0.3553 49 1 -3.2884 -2.2581 -2.0502 50 1 -6.9400 -1.7943 -1.9446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352388708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:28 Heat of formation + Delta-G solvation = -137.193290 kcal Electronic energy + Delta-G solvation = -31089.151515 eV Core-core repulsion = 27049.392355 eV Total energy + Delta-G solvation = -4039.759160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11040 -39.41781 -38.21583 -37.05275 -36.53914 -36.29118 -34.83787 -34.14533 -32.66977 -29.92973 -29.67384 -28.03284 -27.89191 -25.67321 -25.42722 -23.39324 -22.42245 -20.74969 -20.34033 -19.95625 -18.84082 -18.55426 -18.16182 -17.31139 -17.26212 -16.93185 -16.50303 -16.42072 -16.06195 -15.89440 -15.50346 -15.17025 -14.73236 -14.60322 -14.55965 -14.36900 -14.23966 -13.95390 -13.52054 -13.27983 -13.17105 -13.08397 -13.06696 -12.93715 -12.86364 -12.76723 -12.70502 -12.63051 -12.49001 -12.33528 -12.15005 -12.07469 -11.81367 -11.70861 -11.64254 -11.41990 -11.29238 -11.06094 -10.78127 -10.54409 -10.16403 -10.03698 -8.20255 -6.29756 -0.76850 1.40251 1.42326 1.54134 1.61023 1.73421 2.29713 2.41488 2.72114 3.13899 3.21071 3.41018 3.50122 3.60370 3.73146 3.86588 3.90424 4.00665 4.06423 4.12258 4.25197 4.39519 4.43188 4.50215 4.59827 4.66145 4.76191 4.81319 4.88128 4.90662 4.93230 4.97513 5.09133 5.10421 5.12781 5.14128 5.18954 5.23954 5.41050 5.45720 5.50004 5.52833 5.69497 5.83798 5.84100 5.94833 6.24037 6.32941 6.86152 7.20598 7.39347 8.90869 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.003067 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.557957 B = 9126.309546 C = 9997.254610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.068 4.068 3 C -0.143 4.143 4 C -0.164 4.164 5 C 0.150 3.850 6 H 0.122 0.878 7 N -0.699 5.699 8 C 0.521 3.479 9 O -0.608 6.608 10 C -0.133 4.133 11 C -0.141 4.141 12 C 0.129 3.871 13 H 0.129 0.871 14 N -1.108 6.108 15 S 2.617 3.383 16 O -0.996 6.996 17 O -0.978 6.978 18 C -0.612 4.612 19 C -0.104 4.104 20 C 0.035 3.965 21 C -0.550 4.550 22 H 0.057 0.943 23 C 0.006 3.994 24 N -0.926 5.926 25 Si 0.956 3.044 26 H -0.266 1.266 27 H -0.277 1.277 28 H -0.279 1.279 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.403 0.597 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.425 0.575 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.009 0.991 49 H 0.004 0.996 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.920 7.820 9.155 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.069 4.069 3 C -0.200 4.200 4 C -0.222 4.222 5 C 0.044 3.956 6 H 0.140 0.860 7 N -0.350 5.350 8 C 0.309 3.691 9 O -0.490 6.490 10 C -0.173 4.173 11 C -0.180 4.180 12 C 0.022 3.978 13 H 0.146 0.854 14 N -0.873 5.873 15 S 2.713 3.287 16 O -0.986 6.986 17 O -0.968 6.968 18 C -0.743 4.743 19 C -0.144 4.144 20 C -0.004 4.004 21 C -0.589 4.589 22 H 0.075 0.925 23 C -0.192 4.192 24 N -0.566 5.566 25 Si 0.781 3.219 26 H -0.190 1.190 27 H -0.203 1.203 28 H -0.205 1.205 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.241 0.759 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.266 0.734 44 H 0.176 0.824 45 H 0.167 0.833 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.028 0.972 49 H 0.022 0.978 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.324 6.807 9.161 20.745 hybrid contribution -0.693 0.470 -1.006 1.308 sum 16.631 7.276 8.155 19.901 Atomic orbital electron populations 1.22304 0.93194 1.03175 1.03568 1.20781 0.96396 0.95967 0.93729 1.21927 1.00890 0.94127 1.03101 1.22474 1.01024 1.01015 0.97656 1.21465 0.78685 0.95207 1.00248 0.86001 1.45566 1.07876 1.16510 1.65046 1.20502 0.86544 0.86061 0.75975 1.90748 1.16613 1.84397 1.57280 1.21565 0.97564 0.94362 1.03801 1.22267 0.93818 1.03045 0.98848 1.21515 1.02584 0.91190 0.82544 0.85390 1.56065 1.38095 1.62092 1.31036 1.04642 0.76234 0.74788 0.73067 1.93548 1.79185 1.81175 1.44683 1.93549 1.86859 1.60824 1.55580 1.30724 1.16660 1.13993 1.12882 1.21294 0.94688 0.97602 1.00776 1.18929 0.90770 0.94575 0.96089 1.21777 0.95782 0.95905 1.45394 0.92484 1.25831 1.01324 0.96495 0.95565 1.70052 1.22738 1.13645 1.50186 0.85531 0.79026 0.79315 0.78012 1.18994 1.20263 1.20490 0.90323 0.92253 0.91959 0.92417 0.92236 0.90955 0.92246 0.92241 0.92329 0.75918 0.87457 0.88907 0.87397 0.89169 0.73442 0.82413 0.83277 0.92171 0.91411 0.97223 0.97780 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 7.89 71.98 0.57 -1.43 16 2 C -0.07 -0.69 0.59 -52.18 -0.03 -0.73 16 3 C -0.14 -1.20 8.24 71.98 0.59 -0.61 16 4 C -0.16 -2.27 6.92 71.98 0.50 -1.78 16 5 C 0.15 1.35 2.25 45.10 0.10 1.45 16 6 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 7 N -0.70 -8.79 3.76 -446.64 -1.68 -10.46 16 8 C 0.52 9.88 7.36 87.72 0.65 10.53 16 9 O -0.61 -17.20 17.78 -3.04 -0.05 -17.26 16 10 C -0.13 -2.13 5.59 29.71 0.17 -1.97 16 11 C -0.14 -1.72 5.73 30.73 0.18 -1.55 16 12 C 0.13 1.53 1.72 45.08 0.08 1.61 16 13 H 0.13 1.08 5.72 -2.39 -0.01 1.07 16 14 N -1.11 -18.68 2.04 -169.01 -0.35 -19.03 16 15 S 2.62 65.69 4.92 -56.49 -0.28 65.41 16 16 O -1.00 -32.45 18.08 -127.65 -2.31 -34.76 16 17 O -0.98 -29.06 17.04 -127.65 -2.18 -31.23 16 18 C -0.61 -15.50 4.20 71.98 0.30 -15.20 16 19 C -0.10 -3.86 5.16 30.59 0.16 -3.70 16 20 C 0.03 1.65 4.97 29.85 0.15 1.80 16 21 C -0.55 -29.98 9.11 25.60 0.23 -29.75 16 22 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 23 C 0.01 0.35 5.46 84.65 0.46 0.81 16 24 N -0.93 -53.26 13.29 21.45 0.28 -52.98 16 25 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.80 2.02 -2.39 0.00 0.79 16 32 H 0.06 0.44 6.66 -2.39 -0.02 0.43 16 33 H 0.06 0.58 8.13 -2.38 -0.02 0.57 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.93 4.89 -2.39 -0.01 0.91 16 36 H 0.06 0.83 8.00 -2.38 -0.02 0.81 16 37 H 0.06 0.82 6.24 -2.39 -0.01 0.81 16 38 H 0.40 4.78 7.01 -92.71 -0.65 4.13 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.66 7.77 -2.39 -0.02 1.64 16 41 H 0.11 0.80 8.13 -2.39 -0.02 0.78 16 42 H 0.09 1.36 7.38 -2.39 -0.02 1.34 16 43 H 0.42 6.97 5.39 -96.74 -0.52 6.45 16 44 H 0.16 3.08 6.10 -2.39 -0.01 3.06 16 45 H 0.15 3.34 7.38 -2.39 -0.02 3.32 16 46 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 49 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 50 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -77.00 383.11 -0.63 -77.64 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.21 Total: 18.21 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 4.10 Total: -40.50 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.74 Total: -82.47 kcal Atomic # 8 Polarization: -78.72 SS G_CDS: -4.54 Total: -83.25 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 65.69 SS G_CDS: -0.28 Total: 65.41 kcal Total: -77.00 -0.63 -77.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352388708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.558 kcal (2) G-P(sol) polarization free energy of solvation -77.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds