Wall clock time and date at job start Wed Apr 1 2020 03:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46926 * 2 1 4 4 C 1.53001 * 109.47103 * 119.99488 * 2 1 3 5 5 C 1.53004 * 109.47251 * 175.00600 * 4 2 1 6 6 N 1.46499 * 109.47327 * 180.02562 * 5 4 2 7 7 C 1.46492 * 119.99841 * 269.99940 * 6 5 4 8 8 C 1.50702 * 109.46856 * 269.99530 * 7 6 5 9 9 H 1.07993 * 120.00301 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00194 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00282 * 180.02562 * 10 8 7 12 12 Si 1.86809 * 119.99635 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47022 * 89.99864 * 12 10 8 14 14 H 1.48500 * 109.46641 * 209.99797 * 12 10 8 15 15 H 1.48502 * 109.46935 * 329.99726 * 12 10 8 16 16 C 1.34774 * 119.99957 * 89.99194 * 6 5 4 17 17 O 1.21282 * 120.00474 * 0.02562 * 16 6 5 18 18 C 1.50701 * 120.00022 * 180.02562 * 16 6 5 19 19 N 1.46502 * 109.47373 * 180.02562 * 18 16 6 20 20 C 1.47021 * 120.99889 * 85.00119 * 19 18 16 21 21 C 1.52743 * 109.48960 * 122.54981 * 20 19 18 22 22 C 1.52686 * 110.66546 * 64.31608 * 21 20 19 23 23 C 1.53289 * 109.77124 * 289.71831 * 22 21 20 24 24 S 1.66403 * 120.99048 * 265.01894 * 19 18 16 25 25 O 1.42098 * 104.54059 * 344.37042 * 24 19 18 26 26 O 1.42107 * 104.53419 * 112.73944 * 24 19 18 27 27 H 1.09002 * 109.47134 * 300.00201 * 1 2 3 28 28 H 1.08996 * 109.46960 * 60.00413 * 1 2 3 29 29 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47474 * 239.99425 * 2 1 3 31 31 H 1.09006 * 109.46850 * 299.99626 * 3 2 1 32 32 H 1.08998 * 109.47513 * 59.99450 * 3 2 1 33 33 H 1.08996 * 109.47326 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47347 * 55.00070 * 4 2 1 35 35 H 1.09005 * 109.47169 * 295.00447 * 4 2 1 36 36 H 1.08995 * 109.47377 * 59.99489 * 5 4 2 37 37 H 1.09007 * 109.46547 * 299.99606 * 5 4 2 38 38 H 1.09001 * 109.47441 * 29.99748 * 7 6 5 39 39 H 1.09004 * 109.47646 * 150.00272 * 7 6 5 40 40 H 0.96997 * 120.00045 * 180.02562 * 11 10 8 41 41 H 1.09000 * 109.47025 * 60.00352 * 18 16 6 42 42 H 1.09004 * 109.46943 * 300.00161 * 18 16 6 43 43 H 1.09002 * 109.46562 * 2.54350 * 20 19 18 44 44 H 1.09001 * 109.47039 * 242.55946 * 20 19 18 45 45 H 1.09003 * 109.24058 * 304.01298 * 21 20 19 46 46 H 1.09001 * 109.23925 * 184.62262 * 21 20 19 47 47 H 1.09004 * 109.42272 * 49.81304 * 22 21 20 48 48 H 1.09005 * 109.42001 * 169.62664 * 22 21 20 49 49 H 1.09001 * 109.67677 * 181.48458 * 23 22 21 50 50 H 1.09001 * 109.67500 * 302.03350 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8308 1.1881 6 7 4.0532 -1.5219 2.3841 7 6 4.4014 -0.7546 3.5824 8 6 5.8554 -0.3627 3.5230 9 1 6.4594 -0.6555 2.6770 10 6 6.4143 0.3706 4.5482 11 7 7.6830 0.7130 4.4961 12 14 5.3692 0.8776 6.0113 13 1 5.4394 -0.1736 7.0577 14 1 5.8780 2.1594 6.5623 15 1 3.9598 1.0503 5.5767 16 6 4.1818 -2.8635 2.3818 17 8 3.8938 -3.4987 1.3896 18 6 4.6836 -3.5744 3.6122 19 7 4.7335 -5.0161 3.3570 20 6 5.9012 -5.6303 2.7083 21 6 6.4789 -6.7128 3.6181 22 6 5.4770 -7.8495 3.8063 23 6 4.3029 -7.3688 4.6665 24 16 3.4700 -6.0076 3.7923 25 8 2.6984 -5.2268 4.6947 26 8 2.9282 -6.4576 2.5580 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6054 -1.7196 1.2953 35 1 1.7516 -0.1581 2.1370 36 1 3.9994 0.1677 1.1421 37 1 3.8533 -1.3939 0.3004 38 1 3.7849 0.1429 3.6312 39 1 4.2256 -1.3648 4.4684 40 1 8.0762 1.2285 5.2175 41 1 4.0106 -3.3758 4.4464 42 1 5.6827 -3.2144 3.8578 43 1 6.6581 -4.8675 2.5254 44 1 5.5981 -6.0757 1.7608 45 1 6.7148 -6.2776 4.5892 46 1 7.3910 -7.1083 3.1713 47 1 5.1057 -8.1703 2.8329 48 1 5.9686 -8.6879 4.2999 49 1 3.6017 -8.1888 4.8218 50 1 4.6735 -7.0148 5.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879110244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:18 Heat of formation + Delta-G solvation = -117.458050 kcal Electronic energy + Delta-G solvation = -30529.570467 eV Core-core repulsion = 26490.667091 eV Total energy + Delta-G solvation = -4038.903376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.34746 -37.54714 -36.93048 -36.43560 -35.77642 -34.78319 -33.94866 -32.52602 -30.04115 -29.17466 -27.65724 -27.00925 -26.53123 -24.33942 -22.90068 -22.42126 -21.37711 -19.76362 -19.05488 -18.15986 -17.29956 -17.04406 -16.83897 -16.39165 -15.87779 -15.45181 -15.16067 -15.01361 -14.53209 -14.25096 -14.09256 -13.94995 -13.89670 -13.56521 -13.47807 -12.92510 -12.55843 -12.50006 -12.40592 -12.20652 -12.06393 -12.00204 -11.92084 -11.87316 -11.73349 -11.70738 -11.41163 -11.19752 -11.11215 -10.94561 -10.80725 -10.78662 -10.60620 -10.44560 -10.40880 -10.28005 -10.10416 -9.66639 -9.57937 -8.76897 -8.51568 -7.71426 -6.25218 -4.27229 0.27957 2.62037 3.16458 3.25265 3.27464 3.34879 3.74925 3.91419 4.09505 4.24518 4.28899 4.57897 4.65633 4.93856 5.01945 5.06773 5.07717 5.12336 5.16372 5.19595 5.29083 5.35321 5.58622 5.59686 5.66846 5.71358 5.74208 5.81433 5.85597 5.91205 5.98624 6.00707 6.03031 6.11454 6.12409 6.19911 6.25604 6.36291 6.40320 6.47695 6.57602 6.64288 6.67369 6.75533 7.35900 7.42701 8.12362 8.39340 8.79365 8.94642 9.34715 10.87015 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004617 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.638817 B = 6063.316289 C = 8284.627636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.130 4.130 5 C 0.120 3.880 6 N -0.590 5.590 7 C 0.204 3.796 8 C -0.542 4.542 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.890 5.890 12 Si 0.868 3.132 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.263 1.263 16 C 0.494 3.506 17 O -0.553 6.553 18 C 0.107 3.893 19 N -0.975 5.975 20 C 0.118 3.882 21 C -0.157 4.157 22 C -0.108 4.108 23 C -0.621 4.621 24 S 2.599 3.401 25 O -0.961 6.961 26 O -0.943 6.943 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.129 0.871 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -11.495 -0.820 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.321 5.321 7 C 0.083 3.917 8 C -0.580 4.580 9 H 0.097 0.903 10 C -0.126 4.126 11 N -0.528 5.528 12 Si 0.694 3.306 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.187 1.187 16 C 0.280 3.720 17 O -0.432 6.432 18 C -0.021 4.021 19 N -0.813 5.813 20 C -0.007 4.007 21 C -0.196 4.196 22 C -0.147 4.147 23 C -0.750 4.750 24 S 2.692 3.308 25 O -0.951 6.951 26 O -0.932 6.932 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.147 0.853 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.490 -11.557 -1.398 13.328 hybrid contribution 0.246 0.214 1.310 1.350 sum -6.244 -11.343 -0.088 12.948 Atomic orbital electron populations 1.21824 0.95597 1.01509 1.01296 1.21042 0.95372 0.96334 0.98491 1.21908 1.01701 0.95805 1.01272 1.22023 0.96636 1.00609 0.97616 1.21379 0.92797 0.97779 0.88343 1.47920 1.63201 1.05664 1.15273 1.19862 0.97212 0.91952 0.82690 1.21381 0.93288 1.35468 1.07861 0.90281 1.24869 0.94768 0.95042 0.97926 1.69888 1.11800 1.37861 1.33203 0.86971 0.81371 0.78857 0.83376 1.19721 1.20899 1.18732 1.21051 0.78093 0.82658 0.90188 1.90653 1.51452 1.65991 1.35081 1.21318 1.06007 0.78325 0.96473 1.57005 1.34135 1.15492 1.74658 1.21481 0.88334 0.95890 0.95040 1.22147 0.99465 0.95786 1.02199 1.21311 0.94112 0.99568 0.99660 1.30577 1.11493 1.19677 1.13283 1.05439 0.73940 0.75881 0.75541 1.93573 1.67599 1.67136 1.66785 1.93618 1.75723 1.82437 1.41467 0.92861 0.93039 0.92859 0.91235 0.93209 0.92717 0.91998 0.91904 0.91925 0.90090 0.90897 0.94603 0.95222 0.92353 0.86703 0.85794 0.88714 0.90479 0.90179 0.89066 0.89979 0.89761 0.85290 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.09 -1.26 2.92 -90.62 -0.26 -1.52 16 3 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 4 C -0.13 -2.12 5.01 -26.73 -0.13 -2.25 16 5 C 0.12 2.22 5.16 -4.04 -0.02 2.20 16 6 N -0.59 -12.15 2.46 -175.06 -0.43 -12.58 16 7 C 0.20 4.44 4.03 -5.20 -0.02 4.42 16 8 C -0.54 -13.70 9.84 -34.44 -0.34 -14.03 16 9 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 10 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.89 -25.00 13.96 55.43 0.77 -24.23 16 12 Si 0.87 19.37 27.47 -169.99 -4.67 14.70 16 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 16 C 0.49 10.26 7.74 -10.99 -0.09 10.17 16 17 O -0.55 -12.58 16.01 5.56 0.09 -12.49 16 18 C 0.11 1.90 4.68 -5.19 -0.02 1.88 16 19 N -0.97 -14.94 2.47 -115.41 -0.29 -15.22 16 20 C 0.12 1.47 6.35 -3.89 -0.02 1.44 16 21 C -0.16 -1.38 5.80 -27.02 -0.16 -1.53 16 22 C -0.11 -0.89 5.78 -26.74 -0.15 -1.05 16 23 C -0.62 -5.70 6.59 37.31 0.25 -5.46 16 24 S 2.60 38.45 5.73 -107.50 -0.62 37.84 16 25 O -0.96 -16.86 16.51 -57.50 -0.95 -17.81 16 26 O -0.94 -17.16 18.10 -57.50 -1.04 -18.20 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.48 6.50 -51.93 -0.34 1.14 16 37 H 0.07 1.39 7.42 -51.93 -0.39 1.00 16 38 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 39 H 0.03 0.62 5.87 -51.93 -0.30 0.31 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.12 1.99 6.14 -51.93 -0.32 1.68 16 42 H 0.12 2.15 7.93 -51.93 -0.41 1.74 16 43 H 0.09 1.19 7.92 -51.93 -0.41 0.78 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.69 8.13 -51.93 -0.42 0.26 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -33.91 404.90 -10.24 -44.15 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.81 Total: 4.50 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.40 Total: -6.75 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.06 Total: -52.03 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -1.90 Total: -48.51 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Atomic # 16 Polarization: 38.45 SS G_CDS: -0.62 Total: 37.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.91 -10.24 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879110244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.312 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds