Wall clock time and date at job start Wed Apr 1 2020 03:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46926 * 2 1 4 4 C 1.53001 * 109.47103 * 119.99488 * 2 1 3 5 5 C 1.53004 * 109.47251 * 175.00600 * 4 2 1 6 6 N 1.46499 * 109.47327 * 180.02562 * 5 4 2 7 7 C 1.46492 * 119.99841 * 269.99940 * 6 5 4 8 8 C 1.50702 * 109.46856 * 269.99530 * 7 6 5 9 9 H 1.07993 * 120.00301 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00194 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00282 * 180.02562 * 10 8 7 12 12 Si 1.86809 * 119.99635 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47022 * 89.99864 * 12 10 8 14 14 H 1.48500 * 109.46641 * 209.99797 * 12 10 8 15 15 H 1.48502 * 109.46935 * 329.99726 * 12 10 8 16 16 C 1.34774 * 119.99957 * 89.99194 * 6 5 4 17 17 O 1.21282 * 120.00474 * 0.02562 * 16 6 5 18 18 C 1.50701 * 120.00022 * 180.02562 * 16 6 5 19 19 N 1.46502 * 109.47373 * 180.02562 * 18 16 6 20 20 C 1.47021 * 120.99889 * 85.00119 * 19 18 16 21 21 C 1.52743 * 109.48960 * 122.54981 * 20 19 18 22 22 C 1.52686 * 110.66546 * 64.31608 * 21 20 19 23 23 C 1.53289 * 109.77124 * 289.71831 * 22 21 20 24 24 S 1.66403 * 120.99048 * 265.01894 * 19 18 16 25 25 O 1.42098 * 104.54059 * 344.37042 * 24 19 18 26 26 O 1.42107 * 104.53419 * 112.73944 * 24 19 18 27 27 H 1.09002 * 109.47134 * 300.00201 * 1 2 3 28 28 H 1.08996 * 109.46960 * 60.00413 * 1 2 3 29 29 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47474 * 239.99425 * 2 1 3 31 31 H 1.09006 * 109.46850 * 299.99626 * 3 2 1 32 32 H 1.08998 * 109.47513 * 59.99450 * 3 2 1 33 33 H 1.08996 * 109.47326 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47347 * 55.00070 * 4 2 1 35 35 H 1.09005 * 109.47169 * 295.00447 * 4 2 1 36 36 H 1.08995 * 109.47377 * 59.99489 * 5 4 2 37 37 H 1.09007 * 109.46547 * 299.99606 * 5 4 2 38 38 H 1.09001 * 109.47441 * 29.99748 * 7 6 5 39 39 H 1.09004 * 109.47646 * 150.00272 * 7 6 5 40 40 H 0.96997 * 120.00045 * 180.02562 * 11 10 8 41 41 H 1.09000 * 109.47025 * 60.00352 * 18 16 6 42 42 H 1.09004 * 109.46943 * 300.00161 * 18 16 6 43 43 H 1.09002 * 109.46562 * 2.54350 * 20 19 18 44 44 H 1.09001 * 109.47039 * 242.55946 * 20 19 18 45 45 H 1.09003 * 109.24058 * 304.01298 * 21 20 19 46 46 H 1.09001 * 109.23925 * 184.62262 * 21 20 19 47 47 H 1.09004 * 109.42272 * 49.81304 * 22 21 20 48 48 H 1.09005 * 109.42001 * 169.62664 * 22 21 20 49 49 H 1.09001 * 109.67677 * 181.48458 * 23 22 21 50 50 H 1.09001 * 109.67500 * 302.03350 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8308 1.1881 6 7 4.0532 -1.5219 2.3841 7 6 4.4014 -0.7546 3.5824 8 6 5.8554 -0.3627 3.5230 9 1 6.4594 -0.6555 2.6770 10 6 6.4143 0.3706 4.5482 11 7 7.6830 0.7130 4.4961 12 14 5.3692 0.8776 6.0113 13 1 5.4394 -0.1736 7.0577 14 1 5.8780 2.1594 6.5623 15 1 3.9598 1.0503 5.5767 16 6 4.1818 -2.8635 2.3818 17 8 3.8938 -3.4987 1.3896 18 6 4.6836 -3.5744 3.6122 19 7 4.7335 -5.0161 3.3570 20 6 5.9012 -5.6303 2.7083 21 6 6.4789 -6.7128 3.6181 22 6 5.4770 -7.8495 3.8063 23 6 4.3029 -7.3688 4.6665 24 16 3.4700 -6.0076 3.7923 25 8 2.6984 -5.2268 4.6947 26 8 2.9282 -6.4576 2.5580 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6054 -1.7196 1.2953 35 1 1.7516 -0.1581 2.1370 36 1 3.9994 0.1677 1.1421 37 1 3.8533 -1.3939 0.3004 38 1 3.7849 0.1429 3.6312 39 1 4.2256 -1.3648 4.4684 40 1 8.0762 1.2285 5.2175 41 1 4.0106 -3.3758 4.4464 42 1 5.6827 -3.2144 3.8578 43 1 6.6581 -4.8675 2.5254 44 1 5.5981 -6.0757 1.7608 45 1 6.7148 -6.2776 4.5892 46 1 7.3910 -7.1083 3.1713 47 1 5.1057 -8.1703 2.8329 48 1 5.9686 -8.6879 4.2999 49 1 3.6017 -8.1888 4.8218 50 1 4.6735 -7.0148 5.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879110244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:17 Heat of formation + Delta-G solvation = -140.686989 kcal Electronic energy + Delta-G solvation = -30530.577749 eV Core-core repulsion = 26490.667091 eV Total energy + Delta-G solvation = -4039.910658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96457 -38.58708 -38.18003 -37.66755 -37.01481 -36.41655 -35.00653 -34.47532 -31.38519 -30.35820 -29.32091 -28.02558 -27.78586 -25.32283 -24.57773 -24.00449 -22.20383 -20.93650 -20.43278 -19.51035 -19.05907 -18.50297 -18.13350 -17.81781 -17.22137 -16.68331 -16.49054 -16.19396 -16.01904 -15.71959 -15.27108 -14.96715 -14.90838 -14.69645 -14.67196 -14.64061 -14.14188 -13.83198 -13.61284 -13.53229 -13.31451 -13.23930 -13.15483 -13.13550 -12.96394 -12.76517 -12.66856 -12.55918 -12.44636 -12.16357 -12.13388 -11.95844 -11.89525 -11.79151 -11.63825 -11.59362 -11.44044 -11.33994 -11.04795 -10.76291 -9.86016 -9.43397 -8.28068 -6.35420 -0.79019 1.41922 1.44555 1.47440 1.53199 1.67977 2.26716 2.36185 2.77889 3.05617 3.17928 3.43774 3.66212 3.75304 3.77731 3.89987 3.96589 4.04822 4.07119 4.20802 4.30129 4.37565 4.44688 4.54838 4.59688 4.63922 4.65528 4.69157 4.76246 4.81128 4.85430 4.87061 4.90935 4.98359 5.00955 5.02173 5.09463 5.12347 5.14662 5.28951 5.34745 5.44547 5.45683 5.48726 5.50680 5.72248 6.19569 6.59028 6.70520 7.22854 7.34114 8.87506 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004617 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.638817 B = 6063.316289 C = 8284.627636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.120 4.120 5 C 0.118 3.882 6 N -0.596 5.596 7 C 0.212 3.788 8 C -0.538 4.538 9 H 0.035 0.965 10 C 0.027 3.973 11 N -0.937 5.937 12 Si 0.931 3.069 13 H -0.258 1.258 14 H -0.285 1.285 15 H -0.244 1.244 16 C 0.484 3.516 17 O -0.580 6.580 18 C 0.112 3.888 19 N -0.980 5.980 20 C 0.109 3.891 21 C -0.150 4.150 22 C -0.113 4.113 23 C -0.578 4.578 24 S 2.575 3.425 25 O -0.998 6.998 26 O -0.993 6.993 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.269 0.731 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.124 0.876 49 H 0.162 0.838 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 -12.779 1.203 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.158 4.158 5 C -0.005 4.005 6 N -0.326 5.326 7 C 0.090 3.910 8 C -0.576 4.576 9 H 0.053 0.947 10 C -0.172 4.172 11 N -0.577 5.577 12 Si 0.753 3.247 13 H -0.182 1.182 14 H -0.211 1.211 15 H -0.167 1.167 16 C 0.271 3.729 17 O -0.461 6.461 18 C -0.017 4.017 19 N -0.817 5.817 20 C -0.016 4.016 21 C -0.189 4.189 22 C -0.151 4.151 23 C -0.713 4.713 24 S 2.675 3.325 25 O -0.989 6.989 26 O -0.983 6.983 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.134 0.866 47 H 0.097 0.903 48 H 0.142 0.858 49 H 0.180 0.820 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.185 -12.809 0.577 14.698 hybrid contribution 0.553 0.525 0.583 0.960 sum -6.632 -12.284 1.160 14.008 Atomic orbital electron populations 1.21792 0.93958 1.01587 1.02508 1.21039 0.96710 0.96569 0.96719 1.21877 1.00886 0.95185 1.02411 1.21927 0.94571 0.99963 0.99372 1.21479 0.94512 0.97229 0.87276 1.48053 1.63099 1.05915 1.15564 1.19731 0.94927 0.92607 0.83723 1.21421 0.94648 1.35155 1.06373 0.94674 1.25661 0.95778 0.94895 1.00886 1.70030 1.13897 1.39197 1.34532 0.85961 0.80378 0.78550 0.79761 1.18246 1.21109 1.16739 1.21735 0.77528 0.82707 0.90958 1.90626 1.52641 1.66460 1.36369 1.21200 1.05650 0.79921 0.94929 1.57047 1.34931 1.14409 1.75324 1.21692 0.87295 0.96759 0.95817 1.22136 1.00303 0.94631 1.01808 1.21484 0.93493 1.00297 0.99851 1.30293 1.11640 1.16373 1.13020 1.05949 0.74218 0.77201 0.75153 1.93513 1.69283 1.69220 1.66866 1.93554 1.77330 1.83088 1.44347 0.92371 0.91097 0.93387 0.91564 0.91192 0.92450 0.93246 0.93850 0.91617 0.90052 0.92226 0.93659 0.93556 0.92217 0.86278 0.85799 0.89790 0.91784 0.89132 0.86607 0.90281 0.85781 0.82015 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.19 71.98 0.66 -2.52 16 2 C -0.09 -2.43 2.92 -10.79 -0.03 -2.46 16 3 C -0.15 -3.55 8.95 71.98 0.64 -2.91 16 4 C -0.12 -3.96 5.01 30.60 0.15 -3.81 16 5 C 0.12 4.53 5.16 86.38 0.45 4.98 16 6 N -0.60 -25.39 2.46 -826.16 -2.03 -27.42 16 7 C 0.21 9.22 4.03 85.64 0.35 9.57 16 8 C -0.54 -27.85 9.84 25.60 0.25 -27.59 16 9 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 10 C 0.03 1.44 5.47 84.66 0.46 1.90 16 11 N -0.94 -53.75 13.96 21.45 0.30 -53.45 16 12 Si 0.93 39.07 27.47 68.60 1.88 40.95 16 13 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 14 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 16 C 0.48 20.99 7.74 87.66 0.68 21.66 16 17 O -0.58 -27.93 16.01 -3.03 -0.05 -27.98 16 18 C 0.11 4.10 4.68 85.63 0.40 4.50 16 19 N -0.98 -30.45 2.47 -519.05 -1.28 -31.73 16 20 C 0.11 2.73 6.35 86.19 0.55 3.28 16 21 C -0.15 -2.21 5.80 30.40 0.18 -2.03 16 22 C -0.11 -1.39 5.78 30.59 0.18 -1.21 16 23 C -0.58 -8.33 6.59 72.08 0.47 -7.85 16 24 S 2.57 75.66 5.73 -56.49 -0.32 75.33 16 25 O -1.00 -35.29 16.51 -127.69 -2.11 -37.39 16 26 O -0.99 -37.40 18.10 -127.69 -2.31 -39.71 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.31 6.57 -2.39 -0.02 1.29 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.08 3.08 6.50 -2.39 -0.02 3.07 16 37 H 0.06 2.42 7.42 -2.38 -0.02 2.40 16 38 H 0.05 1.90 7.13 -2.39 -0.02 1.89 16 39 H 0.05 1.89 5.87 -2.39 -0.01 1.87 16 40 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.12 4.20 6.14 -2.39 -0.01 4.18 16 42 H 0.12 4.45 7.93 -2.39 -0.02 4.43 16 43 H 0.08 2.21 7.92 -2.39 -0.02 2.20 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.09 1.20 8.11 -2.39 -0.02 1.18 16 46 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 48 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -78.10 404.90 0.32 -77.78 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.85 Total: 28.13 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 5.39 Total: -4.51 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -3.01 Total: -112.60 kcal Atomic # 8 Polarization: -100.62 SS G_CDS: -4.47 Total: -105.08 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.88 Total: 40.95 kcal Atomic # 16 Polarization: 75.66 SS G_CDS: -0.32 Total: 75.33 kcal Total: -78.10 0.32 -77.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879110244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.908 kcal (2) G-P(sol) polarization free energy of solvation -78.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds