Wall clock time and date at job start Wed Apr 1 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.52999 * 109.47369 * 119.99974 * 2 1 3 5 5 C 1.53004 * 109.46901 * 65.00071 * 4 2 1 6 6 H 1.09003 * 109.47243 * 305.00196 * 5 4 2 7 7 C 1.52996 * 109.46928 * 184.99882 * 5 4 2 8 8 N 1.46501 * 109.47243 * 185.00126 * 7 5 4 9 9 C 1.36929 * 120.00521 * 180.02562 * 8 7 5 10 10 H 1.08008 * 120.00041 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00599 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99624 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00284 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47016 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47059 * 120.00225 * 13 11 9 16 16 H 1.48504 * 109.47268 * 240.00329 * 13 11 9 17 17 N 1.46503 * 109.46769 * 65.00157 * 5 4 2 18 18 C 1.34779 * 120.00242 * 274.72107 * 17 5 4 19 19 O 1.21290 * 119.99278 * 355.43757 * 18 17 5 20 20 C 1.50692 * 120.00252 * 175.43949 * 18 17 5 21 21 S 1.81393 * 112.85213 * 304.51555 * 20 18 17 22 22 C 1.81400 * 101.92004 * 294.25493 * 21 20 18 23 23 O 1.42099 * 108.57902 * 48.73915 * 21 20 18 24 24 O 1.42100 * 108.58198 * 179.76540 * 21 20 18 25 25 C 1.53786 * 113.61354 * 173.20785 * 20 18 17 26 26 C 1.53781 * 87.08013 * 270.88199 * 25 20 18 27 27 C 1.53778 * 87.08340 * 334.56947 * 26 25 20 28 28 H 1.08996 * 109.47403 * 299.99833 * 1 2 3 29 29 H 1.08996 * 109.47285 * 60.00015 * 1 2 3 30 30 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47247 * 240.00111 * 2 1 3 32 32 H 1.08992 * 109.46819 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47079 * 300.00112 * 3 2 1 34 34 H 1.08996 * 109.46896 * 59.99856 * 3 2 1 35 35 H 1.08991 * 109.47137 * 305.00147 * 4 2 1 36 36 H 1.08998 * 109.46804 * 184.99874 * 4 2 1 37 37 H 1.08997 * 109.47383 * 305.00039 * 7 5 4 38 38 H 1.09000 * 109.47196 * 65.00081 * 7 5 4 39 39 H 0.97004 * 119.99929 * 359.97438 * 8 7 5 40 40 H 0.97000 * 119.99966 * 179.97438 * 12 11 9 41 41 H 0.97005 * 119.99964 * 95.00440 * 17 5 4 42 42 H 1.09003 * 109.47655 * 63.83665 * 22 21 20 43 43 H 1.09003 * 109.47128 * 183.83140 * 22 21 20 44 44 H 1.08997 * 109.47116 * 303.83193 * 22 21 20 45 45 H 1.08997 * 113.61648 * 25.43195 * 25 20 18 46 46 H 1.09002 * 113.61163 * 156.33592 * 25 20 18 47 47 H 1.08997 * 113.61370 * 220.01705 * 26 25 20 48 48 H 1.09004 * 113.69107 * 89.12737 * 26 25 20 49 49 H 1.09003 * 113.61612 * 270.88347 * 27 26 25 50 50 H 1.09002 * 113.61483 * 139.98370 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5563 -2.2707 1.0526 7 6 2.0355 -2.8888 2.4917 8 7 1.7571 -4.3233 2.3874 9 6 2.0352 -5.1532 3.4405 10 1 2.4601 -4.7502 4.3480 11 6 1.7709 -6.5124 3.3418 12 7 1.2535 -7.0035 2.2358 13 14 2.1509 -7.6445 4.7782 14 1 2.7232 -6.8513 5.8956 15 1 0.9011 -8.3063 5.2310 16 1 3.1301 -8.6757 4.3502 17 7 2.3148 -2.8420 0.0625 18 6 1.7787 -2.7825 -1.1727 19 8 0.6939 -2.2660 -1.3386 20 6 2.5271 -3.3577 -2.3474 21 16 4.1945 -2.6667 -2.5272 22 6 3.8406 -0.9330 -2.9264 23 8 4.8440 -2.7170 -1.2643 24 8 4.8168 -3.2724 -3.6520 25 6 1.7152 -3.3605 -3.6535 26 6 1.1972 -4.7471 -3.2364 27 6 2.4866 -4.8937 -2.4113 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6055 -0.2618 2.1369 36 1 3.1263 -0.6443 1.2950 37 1 3.0997 -2.7374 2.6719 38 1 1.4634 -2.4669 3.3180 39 1 1.3751 -4.6853 1.5725 40 1 1.0692 -7.9534 2.1666 41 1 3.1485 -3.3163 0.2070 42 1 3.3355 -0.4616 -2.0832 43 1 4.7745 -0.4089 -3.1295 44 1 3.1990 -0.8864 -3.8064 45 1 0.9388 -2.5962 -3.6866 46 1 2.3328 -3.3771 -4.5515 47 1 1.1254 -5.4533 -4.0635 48 1 0.2923 -4.7123 -2.6298 49 1 3.3152 -5.3294 -2.9696 50 1 2.3330 -5.3672 -1.4416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753740708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:42 Heat of formation + Delta-G solvation = -77.740863 kcal Electronic energy + Delta-G solvation = -31602.732175 eV Core-core repulsion = 27565.551066 eV Total energy + Delta-G solvation = -4037.181109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.70727 -38.38351 -37.15973 -36.35175 -36.16145 -35.03382 -33.49782 -31.27931 -29.95283 -29.32022 -27.02503 -26.90548 -25.86140 -25.57148 -23.03531 -22.07248 -20.52810 -19.87109 -19.80320 -18.96960 -17.93047 -17.13541 -16.49717 -16.37437 -16.19363 -15.79744 -15.41256 -14.96962 -14.58821 -14.18603 -13.93121 -13.90340 -13.51288 -13.42647 -13.30253 -13.06944 -12.98492 -12.73671 -12.66363 -12.48228 -12.28930 -12.20074 -12.16056 -12.14167 -11.95717 -11.60113 -11.25011 -11.11027 -11.04188 -10.97778 -10.84170 -10.68014 -10.60652 -10.40481 -10.28759 -10.20099 -9.99570 -9.74444 -9.60535 -8.93104 -8.72612 -6.96521 -5.79304 -3.08290 -0.28305 2.29563 2.75158 3.06593 3.38877 3.42486 3.48429 3.50316 3.65347 4.09368 4.17039 4.54267 4.55869 4.60121 4.65480 4.74375 4.87274 5.03581 5.06286 5.18883 5.35249 5.39657 5.49372 5.55581 5.57442 5.59792 5.62927 5.76866 5.77554 5.85573 5.89963 5.93204 5.93682 6.01739 6.03989 6.16325 6.20348 6.24762 6.36695 6.42680 6.49804 6.62344 6.74664 6.88303 7.68702 7.73625 8.32513 8.39008 9.51097 10.06178 10.41840 11.43327 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.004531 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.701118 B = 6178.632998 C = 7500.425845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.135 3.865 6 H 0.095 0.905 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.240 4.240 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.932 5.932 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.700 5.700 18 C 0.550 3.450 19 O -0.515 6.515 20 C -0.604 4.604 21 S 2.424 3.576 22 C -0.657 4.657 23 O -0.923 6.923 24 O -0.931 6.931 25 C -0.097 4.097 26 C -0.120 4.120 27 C -0.100 4.100 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.385 0.615 40 H 0.254 0.746 41 H 0.415 0.585 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 14.373 -13.190 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.167 4.167 5 C 0.031 3.969 6 H 0.113 0.887 7 C 0.014 3.986 8 N -0.375 5.375 9 C -0.371 4.371 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.580 5.580 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.352 5.352 18 C 0.332 3.668 19 O -0.392 6.392 20 C -0.696 4.696 21 S 2.605 3.395 22 C -0.806 4.806 23 O -0.920 6.920 24 O -0.928 6.928 25 C -0.136 4.136 26 C -0.159 4.159 27 C -0.139 4.139 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.253 0.747 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.112 0.888 49 H 0.121 0.879 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.545 14.292 -13.007 19.491 hybrid contribution -0.159 -0.621 0.579 0.864 sum 2.386 13.671 -12.428 18.629 Atomic orbital electron populations 1.21871 0.94634 1.03396 1.00044 1.21180 0.96876 0.95045 0.98270 1.21910 1.00562 0.96746 1.01538 1.22083 1.01523 0.94708 0.98375 1.21458 0.98480 0.91067 0.85914 0.88724 1.20986 0.98214 0.86507 0.92858 1.42324 1.76591 1.00907 1.17724 1.19263 1.34654 0.88940 0.94218 0.91063 1.24727 1.01739 0.96900 0.97445 1.69665 1.49685 1.12650 1.26028 0.86118 0.77400 0.80944 0.81711 1.20569 1.21944 1.21869 1.46117 1.27757 1.54793 1.06575 1.18583 0.86106 0.79400 0.82691 1.90666 1.19437 1.44660 1.84416 1.31586 1.22188 1.10906 1.04906 1.07920 0.77024 0.78607 0.75907 1.30297 1.12570 1.24836 1.12919 1.93608 1.70831 1.85810 1.41726 1.93594 1.71550 1.74961 1.52700 1.22663 0.99136 1.01025 0.90743 1.22714 0.97641 0.95715 0.99801 1.22746 1.00566 0.86447 1.04139 0.93863 0.93713 0.90290 0.91617 0.93060 0.93093 0.92677 0.90621 0.91286 0.95415 0.94748 0.78059 0.93587 0.74747 0.84953 0.85008 0.84953 0.88181 0.88194 0.90363 0.88784 0.87875 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.12 37.16 0.30 -1.50 16 2 C -0.10 -1.14 2.38 -90.62 -0.22 -1.36 16 3 C -0.15 -1.50 9.19 37.16 0.34 -1.16 16 4 C -0.13 -1.66 4.36 -26.73 -0.12 -1.78 16 5 C 0.13 2.15 2.33 -67.93 -0.16 1.99 16 6 H 0.09 1.64 5.86 -51.93 -0.30 1.34 16 7 C 0.14 2.73 5.82 -4.04 -0.02 2.71 16 8 N -0.73 -17.79 5.43 -59.91 -0.33 -18.12 16 9 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 10 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 13 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 N -0.70 -10.95 4.12 -53.80 -0.22 -11.18 16 18 C 0.55 7.90 4.80 -10.99 -0.05 7.85 16 19 O -0.52 -7.94 11.23 5.55 0.06 -7.88 16 20 C -0.60 -7.33 0.97 -90.96 -0.09 -7.41 16 21 S 2.42 28.35 4.87 -107.50 -0.52 27.83 16 22 C -0.66 -5.34 10.39 101.05 1.05 -4.29 16 23 O -0.92 -13.60 16.25 -57.83 -0.94 -14.54 16 24 O -0.93 -12.70 17.47 -57.83 -1.01 -13.71 16 25 C -0.10 -0.97 6.89 -25.92 -0.18 -1.15 16 26 C -0.12 -1.37 7.80 -25.92 -0.20 -1.57 16 27 C -0.10 -1.27 7.22 -25.92 -0.19 -1.46 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.17 4.71 -51.93 -0.24 0.93 16 31 H 0.07 0.81 3.33 -51.93 -0.17 0.63 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 9.90 7.33 -40.82 -0.30 9.60 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.41 6.90 7.11 -40.82 -0.29 6.61 16 42 H 0.13 1.10 6.15 -51.92 -0.32 0.78 16 43 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.13 0.79 8.09 -51.93 -0.42 0.37 16 45 H 0.10 0.98 7.37 -51.93 -0.38 0.59 16 46 H 0.10 0.78 7.86 -51.93 -0.41 0.38 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.10 1.16 7.83 -51.93 -0.41 0.75 16 50 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -33.25 396.67 -9.34 -42.59 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -8.29 Total: 14.87 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 0.22 Total: -16.26 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.18 Total: -56.09 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.89 Total: -36.12 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 28.35 SS G_CDS: -0.52 Total: 27.83 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.25 -9.34 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753740708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.147 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds