Wall clock time and date at job start Wed Apr 1 2020 03:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.52999 * 109.47369 * 119.99974 * 2 1 3 5 5 C 1.53004 * 109.46901 * 65.00071 * 4 2 1 6 6 H 1.09003 * 109.47243 * 305.00196 * 5 4 2 7 7 C 1.52996 * 109.46928 * 184.99882 * 5 4 2 8 8 N 1.46501 * 109.47243 * 185.00126 * 7 5 4 9 9 C 1.36929 * 120.00521 * 180.02562 * 8 7 5 10 10 H 1.08008 * 120.00041 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00599 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99624 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00284 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47016 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47059 * 120.00225 * 13 11 9 16 16 H 1.48504 * 109.47268 * 240.00329 * 13 11 9 17 17 N 1.46503 * 109.46769 * 65.00157 * 5 4 2 18 18 C 1.34779 * 120.00242 * 274.72107 * 17 5 4 19 19 O 1.21290 * 119.99278 * 355.43757 * 18 17 5 20 20 C 1.50692 * 120.00252 * 175.43949 * 18 17 5 21 21 S 1.81393 * 112.85213 * 304.51555 * 20 18 17 22 22 C 1.81400 * 101.92004 * 294.25493 * 21 20 18 23 23 O 1.42099 * 108.57902 * 48.73915 * 21 20 18 24 24 O 1.42100 * 108.58198 * 179.76540 * 21 20 18 25 25 C 1.53786 * 113.61354 * 173.20785 * 20 18 17 26 26 C 1.53781 * 87.08013 * 270.88199 * 25 20 18 27 27 C 1.53778 * 87.08340 * 334.56947 * 26 25 20 28 28 H 1.08996 * 109.47403 * 299.99833 * 1 2 3 29 29 H 1.08996 * 109.47285 * 60.00015 * 1 2 3 30 30 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47247 * 240.00111 * 2 1 3 32 32 H 1.08992 * 109.46819 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47079 * 300.00112 * 3 2 1 34 34 H 1.08996 * 109.46896 * 59.99856 * 3 2 1 35 35 H 1.08991 * 109.47137 * 305.00147 * 4 2 1 36 36 H 1.08998 * 109.46804 * 184.99874 * 4 2 1 37 37 H 1.08997 * 109.47383 * 305.00039 * 7 5 4 38 38 H 1.09000 * 109.47196 * 65.00081 * 7 5 4 39 39 H 0.97004 * 119.99929 * 359.97438 * 8 7 5 40 40 H 0.97000 * 119.99966 * 179.97438 * 12 11 9 41 41 H 0.97005 * 119.99964 * 95.00440 * 17 5 4 42 42 H 1.09003 * 109.47655 * 63.83665 * 22 21 20 43 43 H 1.09003 * 109.47128 * 183.83140 * 22 21 20 44 44 H 1.08997 * 109.47116 * 303.83193 * 22 21 20 45 45 H 1.08997 * 113.61648 * 25.43195 * 25 20 18 46 46 H 1.09002 * 113.61163 * 156.33592 * 25 20 18 47 47 H 1.08997 * 113.61370 * 220.01705 * 26 25 20 48 48 H 1.09004 * 113.69107 * 89.12737 * 26 25 20 49 49 H 1.09003 * 113.61612 * 270.88347 * 27 26 25 50 50 H 1.09002 * 113.61483 * 139.98370 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5563 -2.2707 1.0526 7 6 2.0355 -2.8888 2.4917 8 7 1.7571 -4.3233 2.3874 9 6 2.0352 -5.1532 3.4405 10 1 2.4601 -4.7502 4.3480 11 6 1.7709 -6.5124 3.3418 12 7 1.2535 -7.0035 2.2358 13 14 2.1509 -7.6445 4.7782 14 1 2.7232 -6.8513 5.8956 15 1 0.9011 -8.3063 5.2310 16 1 3.1301 -8.6757 4.3502 17 7 2.3148 -2.8420 0.0625 18 6 1.7787 -2.7825 -1.1727 19 8 0.6939 -2.2660 -1.3386 20 6 2.5271 -3.3577 -2.3474 21 16 4.1945 -2.6667 -2.5272 22 6 3.8406 -0.9330 -2.9264 23 8 4.8440 -2.7170 -1.2643 24 8 4.8168 -3.2724 -3.6520 25 6 1.7152 -3.3605 -3.6535 26 6 1.1972 -4.7471 -3.2364 27 6 2.4866 -4.8937 -2.4113 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6055 -0.2618 2.1369 36 1 3.1263 -0.6443 1.2950 37 1 3.0997 -2.7374 2.6719 38 1 1.4634 -2.4669 3.3180 39 1 1.3751 -4.6853 1.5725 40 1 1.0692 -7.9534 2.1666 41 1 3.1485 -3.3163 0.2070 42 1 3.3355 -0.4616 -2.0832 43 1 4.7745 -0.4089 -3.1295 44 1 3.1990 -0.8864 -3.8064 45 1 0.9388 -2.5962 -3.6866 46 1 2.3328 -3.3771 -4.5515 47 1 1.1254 -5.4533 -4.0635 48 1 0.2923 -4.7123 -2.6298 49 1 3.3152 -5.3294 -2.9696 50 1 2.3330 -5.3672 -1.4416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753740708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:39 Heat of formation + Delta-G solvation = -101.769491 kcal Electronic energy + Delta-G solvation = -31603.774135 eV Core-core repulsion = 27565.551066 eV Total energy + Delta-G solvation = -4038.223069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -41.81258 -39.44885 -38.18083 -37.50000 -37.18810 -36.44937 -35.03887 -33.05014 -30.93218 -30.50573 -27.99076 -27.84049 -27.18791 -26.77413 -24.71225 -23.36742 -21.80969 -20.89948 -20.75610 -20.06122 -19.20748 -18.81993 -17.50681 -17.42665 -17.25121 -16.84515 -16.75236 -16.34036 -15.92002 -15.52957 -15.25196 -14.96974 -14.83195 -14.49999 -14.40491 -14.11890 -14.06252 -13.73722 -13.65641 -13.59897 -13.45015 -13.28525 -13.23070 -13.17403 -12.97041 -12.95067 -12.83525 -12.52784 -12.32631 -12.12683 -12.06118 -11.96778 -11.88449 -11.62383 -11.59714 -11.38582 -11.29391 -11.14717 -10.99163 -10.71153 -9.96451 -9.00985 -7.95125 -5.23854 -1.17026 1.31772 1.47073 1.47318 1.57295 1.70400 1.97675 2.47559 2.55102 2.73576 3.15019 3.26003 3.39298 3.55390 3.69017 3.70591 3.95568 3.97983 4.02750 4.12915 4.22563 4.25507 4.37822 4.41521 4.52396 4.67055 4.67441 4.77094 4.82739 4.84786 4.88859 4.91839 4.94501 4.96297 5.01593 5.03203 5.12776 5.18996 5.24051 5.30999 5.39518 5.50472 5.56873 5.57660 5.67911 6.26143 6.49670 7.12572 7.33640 8.06889 8.31240 9.28114 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.004531 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.701118 B = 6178.632998 C = 7500.425845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.144 3.856 6 H 0.077 0.923 7 C 0.140 3.860 8 N -0.742 5.742 9 C -0.243 4.243 10 H 0.077 0.923 11 C -0.073 4.073 12 N -0.966 5.966 13 Si 0.971 3.029 14 H -0.266 1.266 15 H -0.295 1.295 16 H -0.295 1.295 17 N -0.707 5.707 18 C 0.550 3.450 19 O -0.526 6.526 20 C -0.606 4.606 21 S 2.425 3.575 22 C -0.639 4.639 23 O -0.961 6.961 24 O -0.953 6.953 25 C -0.084 4.084 26 C -0.122 4.122 27 C -0.110 4.110 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.409 0.591 42 H 0.136 0.864 43 H 0.157 0.843 44 H 0.162 0.838 45 H 0.106 0.894 46 H 0.130 0.870 47 H 0.099 0.901 48 H 0.069 0.931 49 H 0.117 0.883 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 16.749 -14.206 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.161 4.161 5 C 0.039 3.961 6 H 0.095 0.905 7 C 0.014 3.986 8 N -0.385 5.385 9 C -0.374 4.374 10 H 0.095 0.905 11 C -0.265 4.265 12 N -0.617 5.617 13 Si 0.801 3.199 14 H -0.191 1.191 15 H -0.223 1.223 16 H -0.222 1.222 17 N -0.359 5.359 18 C 0.334 3.666 19 O -0.403 6.403 20 C -0.697 4.697 21 S 2.609 3.391 22 C -0.792 4.792 23 O -0.958 6.958 24 O -0.950 6.950 25 C -0.122 4.122 26 C -0.161 4.161 27 C -0.149 4.149 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.207 0.793 40 H 0.059 0.941 41 H 0.245 0.755 42 H 0.154 0.846 43 H 0.175 0.825 44 H 0.180 0.820 45 H 0.125 0.875 46 H 0.148 0.852 47 H 0.118 0.882 48 H 0.088 0.912 49 H 0.135 0.865 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.214 16.673 -13.998 22.006 hybrid contribution -0.391 -1.288 0.894 1.616 sum 2.823 15.384 -13.104 20.405 Atomic orbital electron populations 1.21813 0.95278 1.01794 1.00712 1.21180 0.96285 0.96477 0.97416 1.21871 1.01146 0.94941 1.02402 1.22053 1.01994 0.92359 0.99665 1.21298 0.97475 0.92758 0.84548 0.90452 1.21154 0.98356 0.84052 0.95083 1.42492 1.76429 1.02886 1.16666 1.19659 1.33317 0.89563 0.94899 0.90501 1.25513 1.02586 0.98485 0.99916 1.69821 1.51435 1.12505 1.27954 0.85103 0.76765 0.78864 0.79187 1.19059 1.22270 1.22186 1.46165 1.27506 1.55114 1.07120 1.18858 0.85989 0.78978 0.82807 1.90664 1.19817 1.45159 1.84654 1.31585 1.23010 1.10159 1.04966 1.07721 0.76245 0.80357 0.74805 1.30164 1.14715 1.19946 1.14349 1.93560 1.71742 1.87077 1.43447 1.93563 1.71956 1.76716 1.52750 1.22766 0.99068 0.99857 0.90484 1.22690 0.95838 0.97661 0.99879 1.22774 1.02064 0.87161 1.02871 0.93168 0.93055 0.92976 0.91827 0.92130 0.91947 0.92182 0.89583 0.90638 0.94965 0.94181 0.79299 0.94140 0.75487 0.84573 0.82451 0.81964 0.87509 0.85223 0.88213 0.91247 0.86476 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.12 71.98 0.58 -2.76 16 2 C -0.10 -2.10 2.38 -10.79 -0.03 -2.13 16 3 C -0.15 -2.45 9.19 71.98 0.66 -1.79 16 4 C -0.12 -3.02 4.36 30.60 0.13 -2.88 16 5 C 0.14 4.64 2.33 44.99 0.10 4.74 16 6 H 0.08 2.78 5.86 -2.39 -0.01 2.77 16 7 C 0.14 5.46 5.82 86.38 0.50 5.96 16 8 N -0.74 -37.19 5.43 -343.46 -1.87 -39.06 16 9 C -0.24 -13.45 9.99 84.04 0.84 -12.61 16 10 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 11 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 12 N -0.97 -58.96 13.06 21.65 0.28 -58.67 16 13 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 17 N -0.71 -22.72 4.12 -442.52 -1.82 -24.54 16 18 C 0.55 15.96 4.80 87.65 0.42 16.38 16 19 O -0.53 -16.23 11.23 -3.06 -0.03 -16.27 16 20 C -0.61 -14.48 0.97 -11.01 -0.01 -14.49 16 21 S 2.42 53.72 4.87 -56.49 -0.28 53.44 16 22 C -0.64 -8.02 10.39 113.37 1.18 -6.85 16 23 O -0.96 -28.33 16.25 -127.37 -2.07 -30.40 16 24 O -0.95 -24.61 17.47 -127.37 -2.23 -26.83 16 25 C -0.08 -1.52 6.89 31.12 0.21 -1.30 16 26 C -0.12 -2.77 7.80 31.12 0.24 -2.53 16 27 C -0.11 -2.90 7.22 31.12 0.22 -2.68 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.55 4.71 -2.39 -0.01 1.54 16 31 H 0.06 1.43 3.33 -2.38 -0.01 1.42 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.37 20.19 7.33 -92.71 -0.68 19.51 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.41 14.22 7.11 -92.70 -0.66 13.56 16 42 H 0.14 1.76 6.15 -2.39 -0.01 1.75 16 43 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.16 1.14 8.09 -2.39 -0.02 1.12 16 45 H 0.11 1.84 7.37 -2.39 -0.02 1.82 16 46 H 0.13 1.61 7.86 -2.39 -0.02 1.59 16 47 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.12 2.69 7.83 -2.39 -0.02 2.67 16 50 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 Total: -1.00 -73.43 396.67 -0.83 -74.26 By element: Atomic # 1 Polarization: 46.67 SS G_CDS: -0.39 Total: 46.28 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 5.54 Total: -26.63 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -3.41 Total: -122.27 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -4.33 Total: -73.50 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 16 Polarization: 53.72 SS G_CDS: -0.28 Total: 53.44 kcal Total: -73.43 -0.83 -74.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753740708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.509 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds