Wall clock time and date at job start Wed Apr 1 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32991 * 120.00080 * 2 1 4 4 C 1.47106 * 119.99678 * 352.14612 * 3 2 1 5 5 O 1.21606 * 120.00226 * 353.28793 * 4 3 2 6 6 N 1.34784 * 119.99825 * 173.29235 * 4 3 2 7 7 C 1.46928 * 120.62857 * 354.42775 * 6 4 3 8 8 C 1.53191 * 108.77709 * 233.63012 * 7 6 4 9 9 C 1.53043 * 109.31358 * 305.36980 * 8 7 6 10 10 H 1.09000 * 109.45676 * 301.34302 * 9 8 7 11 11 C 1.52992 * 109.46222 * 181.38412 * 9 8 7 12 12 F 1.39902 * 109.47052 * 299.92954 * 11 9 8 13 13 F 1.39901 * 109.47105 * 59.92569 * 11 9 8 14 14 F 1.39895 * 109.47335 * 179.97438 * 11 9 8 15 15 C 1.53039 * 109.53688 * 61.35805 * 9 8 7 16 16 H 1.09003 * 109.49461 * 178.65022 * 15 9 8 17 17 N 1.46504 * 109.49768 * 58.59379 * 15 9 8 18 18 C 1.36934 * 120.00365 * 155.05908 * 17 15 9 19 19 H 1.07997 * 119.99967 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00240 * 179.72262 * 18 17 15 21 21 N 1.31626 * 119.99936 * 0.27437 * 20 18 17 22 22 Si 1.86800 * 120.00384 * 180.27897 * 20 18 17 23 23 H 1.48495 * 109.47174 * 89.99600 * 22 20 18 24 24 H 1.48498 * 109.47182 * 210.00257 * 22 20 18 25 25 H 1.48501 * 109.46558 * 329.99936 * 22 20 18 26 26 C 1.46994 * 120.61397 * 174.45033 * 6 4 3 27 27 C 1.50704 * 119.99830 * 180.02562 * 2 1 3 28 28 C 1.52994 * 117.50050 * 8.62466 * 27 2 1 29 29 C 1.52990 * 117.49738 * 299.99810 * 27 2 1 30 30 H 1.09008 * 109.47517 * 83.68864 * 1 2 3 31 31 H 1.08999 * 109.47445 * 203.68731 * 1 2 3 32 32 H 1.09004 * 109.47317 * 323.68963 * 1 2 3 33 33 H 1.07995 * 120.00139 * 172.13999 * 3 2 1 34 34 H 1.08998 * 109.58295 * 113.84445 * 7 6 4 35 35 H 1.08997 * 109.59004 * 353.42163 * 7 6 4 36 36 H 1.08994 * 109.49863 * 185.41213 * 8 7 6 37 37 H 1.09000 * 109.52128 * 65.33519 * 8 7 6 38 38 H 0.96996 * 119.99422 * 335.05761 * 17 15 9 39 39 H 0.96993 * 119.99896 * 179.97438 * 21 20 18 40 40 H 1.09003 * 109.62982 * 6.60135 * 26 6 4 41 41 H 1.09001 * 109.58355 * 246.14480 * 26 6 4 42 42 H 1.08998 * 115.54547 * 154.32985 * 27 2 1 43 43 H 1.09006 * 117.49875 * 359.97438 * 28 27 2 44 44 H 1.08996 * 117.50152 * 145.01688 * 28 27 2 45 45 H 1.09000 * 117.50078 * 214.98101 * 29 27 2 46 46 H 1.08996 * 117.50389 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4467 2.4197 -0.1741 5 8 0.2600 2.4100 -0.4394 6 7 2.0976 3.5923 -0.0396 7 6 3.4994 3.6242 0.3994 8 6 3.6169 4.5600 1.6066 9 6 3.0408 5.9303 1.2427 10 1 3.5815 6.3361 0.3877 11 6 3.1877 6.8779 2.4348 12 9 2.4933 6.3579 3.5323 13 9 4.5418 7.0112 2.7604 14 9 2.6617 8.1308 2.1023 15 6 1.5595 5.7846 0.8867 16 1 1.1439 6.7643 0.6510 17 7 0.8377 5.2082 2.0239 18 6 -0.5039 5.4393 2.1717 19 1 -1.0300 6.0461 1.4497 20 6 -1.1889 4.8885 3.2460 21 7 -0.5478 4.1484 4.1257 22 14 -3.0206 5.1972 3.4433 23 1 -3.7805 4.1365 2.7345 24 1 -3.3731 5.1791 4.8857 25 1 -3.3641 6.5218 2.8664 26 6 1.4180 4.8632 -0.3289 27 6 2.2605 -1.3052 -0.0006 28 6 1.4517 -2.5877 -0.2047 29 6 2.0260 -2.2567 1.1743 30 1 -0.3634 0.1130 -1.0215 31 1 -0.3634 -0.9411 0.4128 32 1 -0.3634 0.8281 0.6086 33 1 3.2443 1.1561 0.1279 34 1 4.1278 3.9930 -0.4113 35 1 3.8166 2.6207 0.6827 36 1 4.6658 4.6679 1.8825 37 1 3.0610 4.1429 2.4462 38 1 1.3102 4.6629 2.6721 39 1 -1.0263 3.7638 4.8765 40 1 0.3621 4.6773 -0.5255 41 1 1.8768 5.3330 -1.1988 42 1 3.2631 -1.2689 -0.4266 43 1 0.3745 -2.4876 -0.3381 44 1 1.9221 -3.3955 -0.7652 45 1 2.8743 -2.8468 1.5210 46 1 1.3272 -1.9386 1.9479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998246187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:14 Heat of formation + Delta-G solvation = -141.873987 kcal Electronic energy + Delta-G solvation = -32747.240928 eV Core-core repulsion = 28029.978106 eV Total energy + Delta-G solvation = -4717.262822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.91915 -48.45230 -48.32848 -41.23515 -39.42154 -38.42410 -35.88108 -34.27679 -34.11801 -32.75838 -30.49485 -29.17518 -27.78931 -26.03899 -24.92596 -24.38402 -23.58852 -23.18906 -21.53401 -20.26806 -19.45369 -19.23235 -19.08195 -18.77039 -18.55629 -17.75192 -17.03018 -16.64674 -16.28174 -16.09283 -15.94962 -15.48976 -15.39110 -15.11901 -15.05708 -14.82640 -14.63551 -14.52904 -14.44251 -14.38683 -14.12870 -13.92263 -13.79470 -13.56290 -13.55810 -13.12223 -12.88616 -12.80101 -12.72152 -12.43268 -12.30604 -12.25009 -12.09521 -11.87541 -11.79875 -11.65342 -11.53615 -11.29195 -11.03484 -10.40135 -9.90444 -9.48117 -8.84897 -7.91482 -5.16457 0.43285 1.40484 1.43477 1.49333 1.93700 2.18488 2.47093 2.54612 2.96691 3.04831 3.09655 3.25248 3.42398 3.54446 3.78405 3.89325 3.92992 3.96940 3.99754 4.08960 4.12021 4.14918 4.25171 4.33683 4.44765 4.59511 4.68676 4.71654 4.73475 4.76288 4.82725 4.83527 4.86662 5.00990 5.10248 5.16803 5.18273 5.27521 5.27722 5.50617 5.54105 5.59566 5.79456 6.29190 6.65665 7.38722 7.44281 8.11534 8.34332 9.31449 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.009301 B = 0.004527 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.594748 B = 6183.972036 C = 8041.910578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.006 4.006 3 C -0.233 4.233 4 C 0.533 3.467 5 O -0.582 6.582 6 N -0.599 5.599 7 C 0.115 3.885 8 C -0.131 4.131 9 C -0.126 4.126 10 H 0.156 0.844 11 C 0.451 3.549 12 F -0.186 7.186 13 F -0.186 7.186 14 F -0.194 7.194 15 C 0.156 3.844 16 H 0.065 0.935 17 N -0.717 5.717 18 C -0.226 4.226 19 H 0.068 0.932 20 C -0.068 4.068 21 N -0.961 5.961 22 Si 0.957 3.043 23 H -0.298 1.298 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.104 3.896 27 C -0.135 4.135 28 C -0.167 4.167 29 C -0.167 4.167 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.162 0.838 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.048 0.952 38 H 0.379 0.621 39 H 0.246 0.754 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.140 0.860 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.958 -7.157 -10.912 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.008 4.008 3 C -0.253 4.253 4 C 0.326 3.674 5 O -0.465 6.465 6 N -0.331 5.331 7 C -0.007 4.007 8 C -0.169 4.169 9 C -0.146 4.146 10 H 0.173 0.827 11 C 0.397 3.603 12 F -0.167 7.167 13 F -0.168 7.168 14 F -0.176 7.176 15 C 0.046 3.954 16 H 0.083 0.917 17 N -0.359 5.359 18 C -0.358 4.358 19 H 0.086 0.914 20 C -0.260 4.260 21 N -0.612 5.612 22 Si 0.788 3.212 23 H -0.226 1.226 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.022 4.022 27 C -0.153 4.153 28 C -0.203 4.203 29 C -0.204 4.204 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.179 0.821 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.066 0.934 38 H 0.214 0.786 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.158 0.842 43 H 0.110 0.890 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.182 -7.021 -11.030 20.036 hybrid contribution -1.551 0.514 1.185 2.018 sum 13.631 -6.507 -9.845 18.030 Atomic orbital electron populations 1.20964 0.92828 1.01269 1.02250 1.21972 0.95132 0.94093 0.89596 1.22506 1.01605 0.90494 1.10678 1.19067 0.86192 0.85463 0.76692 1.90739 1.17115 1.87798 1.50804 1.47870 1.13496 1.05259 1.66468 1.21969 0.80947 1.01548 0.96220 1.21978 1.02788 0.92632 0.99515 1.22775 0.99989 0.96069 0.95792 0.82673 1.20843 0.72877 0.80493 0.86062 1.93263 1.79468 1.86324 1.57645 1.93132 1.33463 1.96197 1.93981 1.93121 1.86858 1.45140 1.92453 1.20815 0.89328 0.96314 0.88947 0.91713 1.42519 1.05992 1.60474 1.26909 1.19428 0.86543 1.24055 1.05821 0.91435 1.25308 1.01157 1.01285 0.98285 1.69797 1.35838 1.39885 1.15685 0.85376 0.81944 0.77711 0.76207 1.22636 1.22197 1.19460 1.22172 0.98152 0.84287 0.97541 1.21318 1.00814 0.87279 1.05900 1.23158 1.00166 0.97426 0.99574 1.23052 1.04182 1.01695 0.91450 0.91176 0.91250 0.93499 0.82055 0.87081 0.87457 0.86584 0.93369 0.78598 0.94561 0.92598 0.88674 0.84240 0.88975 0.85958 0.86006 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 7.89 71.24 0.56 -3.28 16 2 C -0.01 -0.16 5.81 -17.61 -0.10 -0.27 16 3 C -0.23 -6.51 8.86 23.43 0.21 -6.30 16 4 C 0.53 19.63 7.47 86.57 0.65 20.27 16 5 O -0.58 -27.12 12.74 -4.05 -0.05 -27.17 16 6 N -0.60 -18.69 2.89 -823.00 -2.38 -21.07 16 7 C 0.11 2.35 6.30 86.36 0.54 2.90 16 8 C -0.13 -3.21 4.95 30.67 0.15 -3.06 16 9 C -0.13 -3.43 2.02 -10.77 -0.02 -3.45 16 10 H 0.16 2.79 8.14 -2.39 -0.02 2.77 16 11 C 0.45 14.78 2.69 71.98 0.19 14.97 16 12 F -0.19 -8.03 14.40 44.97 0.65 -7.38 16 13 F -0.19 -5.28 16.77 44.97 0.75 -4.53 16 14 F -0.19 -6.69 16.77 44.97 0.75 -5.93 16 15 C 0.16 5.68 2.45 45.07 0.11 5.79 16 16 H 0.07 2.42 7.70 -2.39 -0.02 2.40 16 17 N -0.72 -35.24 3.68 -322.57 -1.19 -36.43 16 18 C -0.23 -12.92 9.93 84.03 0.83 -12.08 16 19 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 21 N -0.96 -60.93 13.06 21.65 0.28 -60.65 16 22 Si 0.96 49.42 29.55 68.60 2.03 51.45 16 23 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 24 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 25 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 26 C 0.10 3.51 6.05 86.35 0.52 4.03 16 27 C -0.14 -2.51 6.01 -11.54 -0.07 -2.58 16 28 C -0.17 -2.65 9.76 30.59 0.30 -2.35 16 29 C -0.17 -2.86 10.11 30.59 0.31 -2.55 16 30 H 0.07 2.33 7.98 -2.38 -0.02 2.31 16 31 H 0.07 1.93 6.26 -2.39 -0.01 1.91 16 32 H 0.05 2.02 6.27 -2.38 -0.01 2.01 16 33 H 0.16 3.13 6.10 -2.91 -0.02 3.12 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 1.83 5.46 -2.39 -0.01 1.82 16 36 H 0.12 2.06 7.76 -2.39 -0.02 2.04 16 37 H 0.05 1.64 6.11 -2.39 -0.01 1.62 16 38 H 0.38 20.15 4.94 -92.71 -0.46 19.69 16 39 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.06 2.41 7.00 -2.39 -0.02 2.39 16 41 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.09 1.65 6.40 -2.38 -0.02 1.63 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -79.10 372.12 6.07 -73.03 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.57 Total: 30.26 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 4.66 Total: 8.42 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -3.28 Total: -118.15 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 9 Polarization: -20.00 SS G_CDS: 2.16 Total: -17.84 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -79.10 6.07 -73.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998246187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.843 kcal (2) G-P(sol) polarization free energy of solvation -79.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds