Wall clock time and date at job start Wed Apr 1 2020 03:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46952 * 2 1 4 4 N 1.46502 * 109.46922 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00445 * 270.00053 * 4 3 2 6 6 O 1.21280 * 120.00587 * 180.02562 * 5 4 3 7 7 C 1.50709 * 119.99763 * 0.02562 * 5 4 3 8 8 C 1.52994 * 109.47232 * 179.97438 * 7 5 4 9 9 S 1.81394 * 109.47182 * 179.97438 * 8 7 5 10 10 C 1.81402 * 101.92450 * 179.97438 * 9 8 7 11 11 O 1.42101 * 108.58171 * 294.48699 * 9 8 7 12 12 O 1.42099 * 108.57813 * 65.51120 * 9 8 7 13 13 C 1.46497 * 120.00041 * 90.00200 * 4 3 2 14 14 C 1.53349 * 109.42224 * 240.12495 * 13 4 3 15 15 C 1.53189 * 109.15350 * 178.67121 * 14 13 4 16 16 N 1.46931 * 108.89061 * 54.57922 * 15 14 13 17 17 C 1.36938 * 120.62972 * 126.29441 * 16 15 14 18 18 H 1.08005 * 120.00173 * 331.83979 * 17 16 15 19 19 C 1.38813 * 119.99936 * 151.83343 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.08512 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.08402 * 19 17 16 22 22 H 1.48500 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46793 * 120.00276 * 21 19 17 24 24 H 1.48498 * 109.46814 * 240.00176 * 21 19 17 25 25 C 1.46927 * 118.74004 * 306.32424 * 16 15 14 26 26 C 1.53047 * 109.46203 * 119.99905 * 13 4 3 27 27 H 1.09000 * 109.46900 * 299.99729 * 1 2 3 28 28 H 1.08997 * 109.47022 * 59.99826 * 1 2 3 29 29 H 1.08999 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46900 * 240.00271 * 2 1 3 31 31 H 1.09002 * 109.47290 * 120.00572 * 2 1 3 32 32 H 1.09000 * 109.47097 * 60.00392 * 3 2 1 33 33 H 1.08997 * 109.47399 * 299.99943 * 3 2 1 34 34 H 1.09000 * 109.46821 * 300.00374 * 7 5 4 35 35 H 1.09007 * 109.46726 * 59.99687 * 7 5 4 36 36 H 1.09000 * 109.47123 * 300.00085 * 8 7 5 37 37 H 1.09003 * 109.46943 * 60.00060 * 8 7 5 38 38 H 1.08999 * 109.47001 * 60.00060 * 10 9 8 39 39 H 1.08999 * 109.47093 * 179.97438 * 10 9 8 40 40 H 1.09002 * 109.47246 * 300.00502 * 10 9 8 41 41 H 1.08997 * 109.46024 * 0.02895 * 13 4 3 42 42 H 1.09001 * 109.68292 * 58.70764 * 14 13 4 43 43 H 1.08994 * 109.47524 * 298.51588 * 14 13 4 44 44 H 1.09000 * 109.58714 * 294.72587 * 15 14 13 45 45 H 1.09003 * 109.58688 * 174.43867 * 15 14 13 46 46 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.58255 * 173.39566 * 25 16 15 48 48 H 1.09000 * 109.58150 * 293.67300 * 25 16 15 49 49 H 1.09000 * 109.49464 * 61.43529 * 26 13 4 50 50 H 1.08999 * 109.52117 * 301.35281 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1785 1.4427 1.1680 6 8 5.3913 1.4431 1.1686 7 6 3.4244 1.4423 2.4729 8 6 4.4181 1.4419 3.6362 9 16 3.5105 1.4422 5.2068 10 6 4.8597 1.4409 6.4193 11 8 2.8010 2.6682 5.3195 12 8 2.8002 0.2166 5.3194 13 6 4.2380 1.4423 -1.2678 14 6 5.1169 0.1883 -1.3487 15 6 5.8550 0.1775 -2.6910 16 7 6.5891 1.4415 -2.8403 17 6 7.9310 1.4409 -3.1134 18 1 8.5478 0.6160 -2.7885 19 6 8.4984 2.5004 -3.8079 20 7 7.7325 3.3273 -4.4876 21 14 10.3491 2.7526 -3.7779 22 1 10.9795 1.6943 -2.9486 23 1 10.8812 2.6787 -5.1623 24 1 10.6577 4.0850 -3.1994 25 6 5.8562 2.7061 -2.6905 26 6 5.1178 2.6920 -1.3484 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.7974 2.3320 2.5304 35 1 2.7980 0.5520 2.5303 36 1 5.0448 0.5519 3.5784 37 1 5.0448 2.3319 3.5790 38 1 5.4741 2.3305 6.2802 39 1 4.4430 1.4414 7.4265 40 1 5.4729 0.5505 6.2798 41 1 3.5299 1.4428 -2.0964 42 1 4.4937 -0.7025 -1.2690 43 1 5.8419 0.1995 -0.5349 44 1 5.1351 0.0750 -3.5030 45 1 6.5555 -0.6572 -2.7161 46 1 8.1290 4.0678 -4.9726 47 1 6.5580 3.5399 -2.7128 48 1 5.1383 2.8109 -3.5039 49 1 5.8427 2.6797 -0.5344 50 1 4.4943 3.5823 -1.2669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690135888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:33 Heat of formation + Delta-G solvation = -88.556144 kcal Electronic energy + Delta-G solvation = -30026.612534 eV Core-core repulsion = 25988.962440 eV Total energy + Delta-G solvation = -4037.650095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.27028 -37.29579 -37.18592 -36.35618 -36.05959 -33.76069 -33.01623 -31.96610 -30.12856 -29.96108 -29.47695 -26.32378 -25.93582 -24.25685 -22.26061 -22.02543 -21.73545 -19.56883 -19.21925 -18.77570 -17.42775 -16.75728 -16.64653 -16.39739 -16.11462 -15.72447 -15.57514 -14.85272 -14.63265 -14.15846 -13.97248 -13.71874 -13.59990 -13.55568 -13.53252 -13.19865 -12.97297 -12.78715 -12.64320 -12.48425 -12.40292 -12.30908 -12.28418 -11.86650 -11.80508 -11.50706 -11.42197 -11.36099 -11.12184 -10.97309 -10.92088 -10.84546 -10.69176 -10.27328 -10.10905 -10.04416 -9.67294 -9.52296 -9.25597 -8.50919 -8.27834 -6.62169 -5.74627 -3.15944 -0.37919 2.37116 2.72861 2.99903 3.33429 3.40594 3.48000 3.51074 3.67710 4.17188 4.39039 4.40022 4.47043 4.54150 4.63351 4.68821 4.82513 5.05231 5.09688 5.22757 5.26641 5.27427 5.37735 5.44197 5.47138 5.52187 5.54821 5.61743 5.70811 5.84458 5.85581 5.89348 6.09595 6.16915 6.34212 6.37718 6.54856 6.61241 6.75809 6.83439 7.02893 7.11362 7.40187 7.59303 7.72591 7.84914 8.34750 8.50260 9.26191 9.89681 10.46202 11.34234 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.002993 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.334124 B = 9353.547583 C =10964.627883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.103 3.897 4 N -0.609 5.609 5 C 0.518 3.482 6 O -0.518 6.518 7 C -0.135 4.135 8 C -0.593 4.593 9 S 2.420 3.580 10 C -0.655 4.655 11 O -0.940 6.940 12 O -0.941 6.941 13 C 0.160 3.840 14 C -0.146 4.146 15 C 0.150 3.850 16 N -0.590 5.590 17 C -0.246 4.246 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.176 3.824 26 C -0.154 4.154 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.015 0.985 45 H 0.054 0.946 46 H 0.252 0.748 47 H 0.088 0.912 48 H 0.016 0.984 49 H 0.078 0.922 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 -4.327 17.863 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.021 4.021 4 N -0.341 5.341 5 C 0.304 3.696 6 O -0.393 6.393 7 C -0.176 4.176 8 C -0.723 4.723 9 S 2.602 3.398 10 C -0.804 4.804 11 O -0.937 6.937 12 O -0.938 6.938 13 C 0.058 3.942 14 C -0.186 4.186 15 C 0.023 3.977 16 N -0.312 5.312 17 C -0.376 4.376 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.549 5.549 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.050 3.950 26 C -0.194 4.194 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.034 0.966 49 H 0.097 0.903 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.805 -4.186 17.909 22.996 hybrid contribution 1.694 0.201 -0.166 1.714 sum -12.111 -3.986 17.742 21.848 Atomic orbital electron populations 1.21716 0.95100 1.02042 1.01990 1.22012 0.96139 0.97243 1.03044 1.21740 0.79989 0.96967 1.03357 1.48320 1.06170 1.73074 1.06552 1.20077 0.88015 0.76896 0.84656 1.90722 1.13416 1.48319 1.86881 1.21454 0.98043 1.05604 0.92500 1.30132 1.12340 1.13330 1.16462 1.07822 0.77919 0.75308 0.78702 1.30239 1.20338 1.11872 1.17978 1.93605 1.69007 1.45582 1.85542 1.93602 1.68991 1.45630 1.85553 1.21203 0.93099 0.97239 0.82628 1.22497 0.99196 0.94998 1.01907 1.20837 0.94160 0.90290 0.92388 1.44028 1.05851 0.99419 1.81951 1.19223 0.83240 1.06522 1.28628 0.91768 1.25022 0.97773 0.99981 0.96970 1.70036 1.33843 1.18244 1.32818 0.86234 0.85659 0.77775 0.77203 1.20269 1.21798 1.21606 1.20721 0.94124 0.90547 0.89634 1.22633 0.99028 0.94436 1.03319 0.92540 0.92447 0.92432 0.91132 0.91764 0.90585 0.89978 0.87561 0.87592 0.84123 0.84065 0.85133 0.85286 0.85153 0.90531 0.93594 0.90051 0.96729 0.92733 0.93781 0.89364 0.96630 0.90299 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.15 -1.30 6.26 -26.73 -0.17 -1.47 16 3 C 0.10 1.01 5.18 -4.04 -0.02 0.99 16 4 N -0.61 -8.32 2.42 -165.87 -0.40 -8.72 16 5 C 0.52 7.37 7.10 -10.98 -0.08 7.29 16 6 O -0.52 -9.39 12.23 5.56 0.07 -9.32 16 7 C -0.14 -1.34 4.26 -27.88 -0.12 -1.46 16 8 C -0.59 -4.73 5.09 37.15 0.19 -4.54 16 9 S 2.42 17.31 5.36 -107.50 -0.58 16.74 16 10 C -0.65 -2.72 10.62 101.05 1.07 -1.65 16 11 O -0.94 -9.99 18.10 -57.83 -1.05 -11.04 16 12 O -0.94 -9.87 18.10 -57.83 -1.05 -10.92 16 13 C 0.16 2.71 2.51 -67.73 -0.17 2.54 16 14 C -0.15 -2.69 5.30 -26.45 -0.14 -2.83 16 15 C 0.15 3.24 6.50 -3.71 -0.02 3.21 16 16 N -0.59 -15.18 2.99 -172.32 -0.52 -15.69 16 17 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 18 H 0.06 1.80 7.89 -52.48 -0.41 1.39 16 19 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 20 N -0.90 -26.59 11.20 55.49 0.62 -25.97 16 21 Si 0.90 22.19 29.59 -169.99 -5.03 17.17 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.18 4.29 5.30 -3.71 -0.02 4.27 16 26 C -0.15 -3.10 5.27 -26.61 -0.14 -3.24 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.58 7.22 -51.93 -0.37 0.20 16 32 H 0.08 0.60 6.44 -51.93 -0.33 0.27 16 33 H 0.08 0.77 7.92 -51.93 -0.41 0.35 16 34 H 0.11 0.87 7.40 -51.93 -0.38 0.49 16 35 H 0.11 0.87 7.19 -51.93 -0.37 0.50 16 36 H 0.14 1.02 8.10 -51.92 -0.42 0.60 16 37 H 0.14 1.05 8.10 -51.92 -0.42 0.63 16 38 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 41 H 0.08 1.24 7.79 -51.93 -0.40 0.84 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.70 6.22 -51.93 -0.32 1.38 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.05 1.17 7.93 -51.93 -0.41 0.75 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 47 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 1.78 6.21 -51.93 -0.32 1.46 16 50 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -37.82 401.44 -10.05 -47.87 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -8.69 Total: -1.40 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 0.52 Total: -4.77 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.30 Total: -50.38 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -2.03 Total: -31.28 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Atomic # 16 Polarization: 17.31 SS G_CDS: -0.58 Total: 16.74 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.82 -10.05 -47.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690135888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.682 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds