Wall clock time and date at job start Wed Apr 1 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46952 * 2 1 4 4 N 1.46502 * 109.46922 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00445 * 270.00053 * 4 3 2 6 6 O 1.21280 * 120.00587 * 180.02562 * 5 4 3 7 7 C 1.50709 * 119.99763 * 0.02562 * 5 4 3 8 8 C 1.52994 * 109.47232 * 179.97438 * 7 5 4 9 9 S 1.81394 * 109.47182 * 179.97438 * 8 7 5 10 10 C 1.81402 * 101.92450 * 179.97438 * 9 8 7 11 11 O 1.42101 * 108.58171 * 294.48699 * 9 8 7 12 12 O 1.42099 * 108.57813 * 65.51120 * 9 8 7 13 13 C 1.46497 * 120.00041 * 90.00200 * 4 3 2 14 14 C 1.53349 * 109.42224 * 240.12495 * 13 4 3 15 15 C 1.53189 * 109.15350 * 178.67121 * 14 13 4 16 16 N 1.46931 * 108.89061 * 54.57922 * 15 14 13 17 17 C 1.36938 * 120.62972 * 126.29441 * 16 15 14 18 18 H 1.08005 * 120.00173 * 331.83979 * 17 16 15 19 19 C 1.38813 * 119.99936 * 151.83343 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.08512 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.08402 * 19 17 16 22 22 H 1.48500 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46793 * 120.00276 * 21 19 17 24 24 H 1.48498 * 109.46814 * 240.00176 * 21 19 17 25 25 C 1.46927 * 118.74004 * 306.32424 * 16 15 14 26 26 C 1.53047 * 109.46203 * 119.99905 * 13 4 3 27 27 H 1.09000 * 109.46900 * 299.99729 * 1 2 3 28 28 H 1.08997 * 109.47022 * 59.99826 * 1 2 3 29 29 H 1.08999 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46900 * 240.00271 * 2 1 3 31 31 H 1.09002 * 109.47290 * 120.00572 * 2 1 3 32 32 H 1.09000 * 109.47097 * 60.00392 * 3 2 1 33 33 H 1.08997 * 109.47399 * 299.99943 * 3 2 1 34 34 H 1.09000 * 109.46821 * 300.00374 * 7 5 4 35 35 H 1.09007 * 109.46726 * 59.99687 * 7 5 4 36 36 H 1.09000 * 109.47123 * 300.00085 * 8 7 5 37 37 H 1.09003 * 109.46943 * 60.00060 * 8 7 5 38 38 H 1.08999 * 109.47001 * 60.00060 * 10 9 8 39 39 H 1.08999 * 109.47093 * 179.97438 * 10 9 8 40 40 H 1.09002 * 109.47246 * 300.00502 * 10 9 8 41 41 H 1.08997 * 109.46024 * 0.02895 * 13 4 3 42 42 H 1.09001 * 109.68292 * 58.70764 * 14 13 4 43 43 H 1.08994 * 109.47524 * 298.51588 * 14 13 4 44 44 H 1.09000 * 109.58714 * 294.72587 * 15 14 13 45 45 H 1.09003 * 109.58688 * 174.43867 * 15 14 13 46 46 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.58255 * 173.39566 * 25 16 15 48 48 H 1.09000 * 109.58150 * 293.67300 * 25 16 15 49 49 H 1.09000 * 109.49464 * 61.43529 * 26 13 4 50 50 H 1.08999 * 109.52117 * 301.35281 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1785 1.4427 1.1680 6 8 5.3913 1.4431 1.1686 7 6 3.4244 1.4423 2.4729 8 6 4.4181 1.4419 3.6362 9 16 3.5105 1.4422 5.2068 10 6 4.8597 1.4409 6.4193 11 8 2.8010 2.6682 5.3195 12 8 2.8002 0.2166 5.3194 13 6 4.2380 1.4423 -1.2678 14 6 5.1169 0.1883 -1.3487 15 6 5.8550 0.1775 -2.6910 16 7 6.5891 1.4415 -2.8403 17 6 7.9310 1.4409 -3.1134 18 1 8.5478 0.6160 -2.7885 19 6 8.4984 2.5004 -3.8079 20 7 7.7325 3.3273 -4.4876 21 14 10.3491 2.7526 -3.7779 22 1 10.9795 1.6943 -2.9486 23 1 10.8812 2.6787 -5.1623 24 1 10.6577 4.0850 -3.1994 25 6 5.8562 2.7061 -2.6905 26 6 5.1178 2.6920 -1.3484 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.7974 2.3320 2.5304 35 1 2.7980 0.5520 2.5303 36 1 5.0448 0.5519 3.5784 37 1 5.0448 2.3319 3.5790 38 1 5.4741 2.3305 6.2802 39 1 4.4430 1.4414 7.4265 40 1 5.4729 0.5505 6.2798 41 1 3.5299 1.4428 -2.0964 42 1 4.4937 -0.7025 -1.2690 43 1 5.8419 0.1995 -0.5349 44 1 5.1351 0.0750 -3.5030 45 1 6.5555 -0.6572 -2.7161 46 1 8.1290 4.0678 -4.9726 47 1 6.5580 3.5399 -2.7128 48 1 5.1383 2.8109 -3.5039 49 1 5.8427 2.6797 -0.5344 50 1 4.4943 3.5823 -1.2669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690135888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:14 Heat of formation + Delta-G solvation = -115.284668 kcal Electronic energy + Delta-G solvation = -30027.771570 eV Core-core repulsion = 25988.962440 eV Total energy + Delta-G solvation = -4038.809131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 18.87 seconds Orbital eigenvalues (eV) -41.43969 -38.78064 -37.98062 -37.18373 -37.04673 -35.13514 -33.92699 -33.44579 -31.75150 -31.24908 -30.35917 -27.45421 -27.10182 -25.64925 -23.88086 -23.56691 -22.60311 -21.14754 -19.97308 -19.75802 -18.90773 -17.99996 -17.47183 -17.29975 -16.94988 -16.82848 -16.56805 -16.40615 -15.65660 -15.43896 -15.34956 -15.04144 -14.96218 -14.72082 -14.21089 -14.14009 -14.03502 -13.92174 -13.90223 -13.49537 -13.25554 -13.11362 -13.04971 -13.02542 -13.01468 -12.71123 -12.62962 -12.58650 -12.50002 -12.24967 -12.12391 -12.03277 -11.98350 -11.81378 -11.61277 -11.53244 -11.38314 -11.20719 -10.63352 -10.46703 -9.55486 -8.69621 -7.89669 -5.34091 -0.92972 1.42949 1.44821 1.55796 1.65625 1.85532 1.98854 2.49266 2.72471 3.14392 3.25320 3.40232 3.60623 3.67275 3.83198 3.96112 4.01244 4.05763 4.13440 4.19467 4.25978 4.34459 4.38090 4.43422 4.52341 4.57287 4.60274 4.67727 4.73974 4.82032 4.86483 4.90942 4.96954 5.00033 5.01079 5.07939 5.15621 5.25614 5.28907 5.42724 5.48359 5.50524 5.61960 5.66512 5.79072 6.37761 6.51374 7.13273 7.25469 7.84382 8.35612 9.17007 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.002993 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.334124 B = 9353.547583 C =10964.627883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.097 3.903 4 N -0.607 5.607 5 C 0.511 3.489 6 O -0.563 6.563 7 C -0.138 4.138 8 C -0.598 4.598 9 S 2.442 3.558 10 C -0.641 4.641 11 O -0.977 6.977 12 O -0.976 6.976 13 C 0.168 3.832 14 C -0.131 4.131 15 C 0.147 3.853 16 N -0.610 5.610 17 C -0.262 4.262 18 H 0.060 0.940 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.965 3.035 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.290 1.290 25 C 0.185 3.815 26 C -0.138 4.138 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.023 0.977 45 H 0.049 0.951 46 H 0.250 0.750 47 H 0.050 0.950 48 H 0.004 0.996 49 H 0.053 0.947 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.700 -4.900 19.766 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C -0.025 4.025 4 N -0.338 5.338 5 C 0.298 3.702 6 O -0.442 6.442 7 C -0.179 4.179 8 C -0.727 4.727 9 S 2.628 3.372 10 C -0.794 4.794 11 O -0.975 6.975 12 O -0.973 6.973 13 C 0.065 3.935 14 C -0.170 4.170 15 C 0.021 3.979 16 N -0.333 5.333 17 C -0.392 4.392 18 H 0.077 0.923 19 C -0.245 4.245 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.195 1.195 23 H -0.214 1.214 24 H -0.216 1.216 25 C 0.058 3.942 26 C -0.178 4.178 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.022 0.978 49 H 0.072 0.928 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.963 -4.784 19.802 25.276 hybrid contribution 2.039 0.348 -0.726 2.192 sum -12.924 -4.435 19.076 23.465 Atomic orbital electron populations 1.21693 0.93609 1.02503 1.02720 1.21965 0.97342 0.96294 1.02478 1.22050 0.77307 0.98114 1.05038 1.48280 1.07718 1.72667 1.05169 1.20841 0.87759 0.75596 0.85959 1.90709 1.15567 1.50293 1.87627 1.21569 0.98423 1.07384 0.90484 1.30194 1.12254 1.13876 1.16350 1.07010 0.78148 0.73550 0.78500 1.30111 1.18762 1.13843 1.16668 1.93555 1.71012 1.46838 1.86047 1.93552 1.70944 1.46783 1.86031 1.20870 0.92966 0.94634 0.85009 1.22272 0.98922 0.97073 0.98776 1.20975 0.94166 0.88402 0.94365 1.44274 1.05648 1.01092 1.82288 1.19486 0.84769 1.06604 1.28388 0.92268 1.25759 1.01918 0.99863 0.96932 1.70171 1.35442 1.18638 1.33610 0.85241 0.80711 0.77540 0.77182 1.19470 1.21426 1.21622 1.20491 0.93109 0.89038 0.91531 1.22354 0.98860 0.97090 0.99533 0.91500 0.92058 0.92153 0.92334 0.91760 0.88147 0.89148 0.85718 0.85760 0.83569 0.83740 0.83343 0.83927 0.83233 0.89135 0.90806 0.92540 0.95951 0.93205 0.94053 0.93169 0.97809 0.92816 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 296. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.14 -2.17 6.26 30.59 0.19 -1.98 16 3 C 0.10 1.64 5.18 86.38 0.45 2.09 16 4 N -0.61 -15.60 2.42 -797.10 -1.93 -17.53 16 5 C 0.51 13.96 7.10 87.66 0.62 14.58 16 6 O -0.56 -20.50 12.23 -3.03 -0.04 -20.53 16 7 C -0.14 -2.47 4.26 29.85 0.13 -2.34 16 8 C -0.60 -8.63 5.09 71.98 0.37 -8.26 16 9 S 2.44 30.61 5.36 -56.49 -0.30 30.31 16 10 C -0.64 -3.33 10.62 113.37 1.20 -2.13 16 11 O -0.98 -19.43 18.10 -127.37 -2.31 -21.73 16 12 O -0.98 -19.03 18.10 -127.37 -2.30 -21.34 16 13 C 0.17 5.57 2.51 45.12 0.11 5.68 16 14 C -0.13 -4.76 5.30 30.77 0.16 -4.59 16 15 C 0.15 6.38 6.50 86.36 0.56 6.94 16 16 N -0.61 -32.22 2.99 -699.08 -2.09 -34.31 16 17 C -0.26 -15.21 9.58 84.03 0.81 -14.41 16 18 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 19 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 20 N -0.93 -56.40 11.20 21.65 0.24 -56.16 16 21 Si 0.97 46.55 29.59 68.60 2.03 48.58 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 25 C 0.18 9.29 5.30 86.36 0.46 9.74 16 26 C -0.14 -5.64 5.27 30.67 0.16 -5.48 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.99 7.22 -2.39 -0.02 0.97 16 32 H 0.10 1.24 6.44 -2.39 -0.02 1.23 16 33 H 0.09 1.42 7.92 -2.39 -0.02 1.40 16 34 H 0.12 1.75 7.40 -2.39 -0.02 1.73 16 35 H 0.12 1.75 7.19 -2.38 -0.02 1.74 16 36 H 0.15 1.92 8.10 -2.39 -0.02 1.91 16 37 H 0.14 1.98 8.10 -2.39 -0.02 1.96 16 38 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.09 2.78 7.79 -2.39 -0.02 2.76 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 2.38 6.22 -2.39 -0.01 2.37 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.05 2.89 6.06 -2.39 -0.01 2.87 16 48 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.05 2.48 6.21 -2.39 -0.01 2.47 16 50 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -84.50 401.44 0.56 -83.94 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.91 Total: 12.37 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 6.35 Total: -3.60 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.78 Total: -107.99 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -4.65 Total: -63.61 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 16 Polarization: 30.61 SS G_CDS: -0.30 Total: 30.31 kcal Total: -84.50 0.56 -83.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690135888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.346 kcal (2) G-P(sol) polarization free energy of solvation -84.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.87 seconds