Wall clock time and date at job start Wed Apr 1 2020 04:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 N 1.46508 * 109.46724 * 299.99912 * 3 2 1 5 5 C 1.36945 * 119.99740 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99962 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99747 * 180.02562 * 5 4 3 8 8 N 1.31615 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99780 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47051 * 59.99894 * 9 7 5 11 11 H 1.48495 * 109.46983 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46866 * 299.99722 * 9 7 5 13 13 N 1.46502 * 109.47125 * 240.00012 * 2 1 3 14 14 C 1.34775 * 120.00087 * 175.42495 * 13 2 1 15 15 O 1.21281 * 119.99997 * 355.97413 * 14 13 2 16 16 C 1.50695 * 120.00023 * 175.98140 * 14 13 2 17 17 H 1.09000 * 109.70486 * 54.41675 * 16 14 13 18 18 C 1.53470 * 109.70377 * 293.79566 * 16 14 13 19 19 O 1.43181 * 108.23801 * 180.59957 * 18 16 14 20 20 C 1.36103 * 116.69325 * 46.29326 * 19 18 16 21 21 C 1.38700 * 119.39927 * 162.83704 * 20 19 18 22 22 C 1.38200 * 120.06951 * 179.63540 * 21 20 19 23 23 C 1.38247 * 120.11053 * 0.02562 * 22 21 20 24 24 C 1.38201 * 120.11341 * 0.07331 * 23 22 21 25 25 C 1.38697 * 120.07108 * 359.95133 * 24 23 22 26 26 O 1.36105 * 119.40409 * 179.79879 * 25 24 23 27 27 C 1.53000 * 109.47304 * 119.99559 * 2 1 3 28 28 C 1.53008 * 117.49693 * 121.77368 * 27 2 1 29 29 C 1.53006 * 117.49512 * 53.15263 * 27 2 1 30 30 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47273 * 299.99618 * 1 2 3 32 32 H 1.08994 * 109.47482 * 60.00329 * 1 2 3 33 33 H 1.09000 * 109.47287 * 59.99692 * 3 2 1 34 34 H 1.08995 * 109.47665 * 180.02562 * 3 2 1 35 35 H 0.96993 * 119.99815 * 0.02562 * 4 3 2 36 36 H 0.97004 * 119.99864 * 180.02562 * 8 7 5 37 37 H 0.97003 * 119.99765 * 355.41813 * 13 2 1 38 38 H 1.08996 * 109.70846 * 300.28257 * 18 16 14 39 39 H 1.08994 * 109.71155 * 60.91298 * 18 16 14 40 40 H 1.07999 * 119.96324 * 359.90503 * 21 20 19 41 41 H 1.07999 * 119.94181 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.94368 * 180.02562 * 23 22 21 43 43 H 1.08008 * 119.96283 * 179.97438 * 24 23 22 44 44 H 1.08995 * 115.55612 * 267.48102 * 27 2 1 45 45 H 1.09001 * 117.49674 * 359.97438 * 28 27 2 46 46 H 1.08999 * 117.49768 * 145.02373 * 28 27 2 47 47 H 1.08995 * 117.49646 * 214.97715 * 29 27 2 48 48 H 1.08995 * 117.49828 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5515 2.1330 -1.1963 5 6 1.8819 3.4443 -1.4127 6 1 2.5028 3.9691 -0.7019 7 6 1.4188 4.0987 -2.5459 8 7 0.6617 3.4591 -3.4120 9 14 1.8700 5.8871 -2.8416 10 1 3.3467 6.0168 -2.9307 11 1 1.2555 6.3492 -4.1120 12 1 1.3671 6.7169 -1.7173 13 7 2.0183 -0.6906 -1.1962 14 6 3.3398 -0.7338 -1.4571 15 8 4.1188 -0.1395 -0.7422 16 6 3.8496 -1.5202 -2.6372 17 1 3.3412 -1.1930 -3.5441 18 6 3.5944 -3.0165 -2.4110 19 8 4.1021 -3.7336 -3.5415 20 6 5.3450 -3.3891 -3.9761 21 6 6.0386 -4.2535 -4.8101 22 6 7.2984 -3.9142 -5.2658 23 6 7.8711 -2.7129 -4.8913 24 6 7.1863 -1.8480 -4.0589 25 6 5.9218 -2.1826 -3.5976 26 8 5.2613 -1.3225 -2.7751 27 6 2.0400 -0.7211 1.2493 28 6 2.9493 -1.9343 1.0429 29 6 1.5081 -2.1304 1.5181 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5137 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 0.9936 1.6617 -1.8345 36 1 0.3383 3.9164 -4.2040 37 1 1.3904 -1.1169 -1.8004 38 1 4.1075 -3.3444 -1.5070 39 1 2.5239 -3.1961 -2.3123 40 1 5.5918 -5.1907 -5.1073 41 1 7.8364 -4.5886 -5.9154 42 1 8.8556 -2.4503 -5.2493 43 1 7.6362 -0.9103 -3.7675 44 1 2.2375 -0.0848 2.1118 45 1 3.1837 -2.2188 0.0172 46 1 3.7452 -2.0961 1.7698 47 1 1.3561 -2.4211 2.5575 48 1 0.7946 -2.5435 0.8052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714176609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:15 Heat of formation + Delta-G solvation = -20.576985 kcal Electronic energy + Delta-G solvation = -31767.296291 eV Core-core repulsion = 27597.150043 eV Total energy + Delta-G solvation = -4170.146249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.59830 -40.29862 -37.97191 -37.52629 -36.79860 -35.01215 -33.52463 -32.18310 -30.85932 -30.77683 -29.58814 -28.49233 -26.09292 -25.41321 -23.76833 -22.98454 -22.25183 -22.02350 -21.37955 -20.44739 -19.22152 -18.85213 -17.90322 -17.49099 -17.24756 -16.40039 -15.96323 -15.46736 -15.45157 -15.26253 -14.80119 -14.64610 -14.38000 -14.20664 -13.98564 -13.87040 -13.60180 -13.35166 -13.28272 -12.88747 -12.27451 -12.23202 -12.16093 -12.05502 -11.93513 -11.53361 -11.47212 -11.24385 -11.09523 -10.90173 -10.82179 -10.76773 -10.62925 -10.28814 -10.09722 -9.91707 -9.66307 -9.35655 -8.80440 -8.76787 -8.69858 -8.20686 -6.82209 -5.72622 -2.98480 1.14729 1.16679 2.50338 2.74460 2.89232 3.47818 3.50337 3.51729 3.53511 3.63201 3.90588 4.05198 4.44046 4.57629 4.60568 4.62638 4.78329 4.82786 4.88946 5.02054 5.05907 5.10126 5.21333 5.24808 5.29177 5.36093 5.47335 5.61735 5.64512 5.68621 5.69155 5.89749 5.98397 5.98942 6.04448 6.08365 6.16651 6.22004 6.30256 6.31138 6.46731 6.52671 6.58676 6.72553 6.87241 7.11636 7.26656 7.69772 7.76340 8.42641 8.47345 9.58669 10.15919 10.51535 11.50694 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.003816 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.690973 B = 7336.554450 C = 9447.264808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.203 3.797 3 C 0.138 3.862 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.938 5.938 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.711 5.711 14 C 0.534 3.466 15 O -0.489 6.489 16 C 0.032 3.968 17 H 0.111 0.889 18 C 0.035 3.965 19 O -0.302 6.302 20 C 0.044 3.956 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.112 4.112 25 C 0.058 3.942 26 O -0.274 6.274 27 C -0.143 4.143 28 C -0.168 4.168 29 C -0.181 4.181 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.022 0.978 34 H 0.056 0.944 35 H 0.381 0.619 36 H 0.253 0.747 37 H 0.396 0.604 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -19.885 1.620 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.117 3.883 3 C 0.010 3.990 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.588 5.588 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.364 5.364 14 C 0.317 3.683 15 O -0.362 6.362 16 C -0.029 4.029 17 H 0.129 0.871 18 C -0.041 4.041 19 O -0.216 6.216 20 C -0.001 4.001 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.130 4.130 25 C 0.013 3.987 26 O -0.187 6.187 27 C -0.163 4.163 28 C -0.205 4.205 29 C -0.218 4.218 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.215 0.785 36 H 0.063 0.937 37 H 0.230 0.770 38 H 0.102 0.898 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.129 0.871 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.648 -19.251 2.224 20.487 hybrid contribution -0.419 0.825 -0.724 1.175 sum 6.229 -18.426 1.500 19.508 Atomic orbital electron populations 1.21993 0.92768 1.01449 1.04313 1.20122 0.93861 0.92686 0.81607 1.21191 0.99276 0.87516 0.91034 1.42223 1.61215 1.10490 1.23098 1.19189 1.24988 0.87576 1.04343 0.91402 1.24662 1.00765 0.98199 0.97443 1.69628 1.39786 1.36158 1.13183 0.86281 0.77900 0.85148 0.76995 1.21368 1.21777 1.21357 1.45854 1.06109 1.57454 1.26984 1.19178 0.83192 0.81434 0.84503 1.90731 1.55575 1.41754 1.48100 1.23029 0.82696 0.96117 1.01029 0.87095 1.23604 1.02094 0.89762 0.88675 1.86317 1.28886 1.59719 1.46687 1.18956 0.86919 0.93474 1.00782 1.20417 0.94421 0.99118 0.99243 1.20898 0.94684 0.97393 1.00971 1.20926 1.00184 0.94119 0.98057 1.20524 0.92788 1.01264 0.98448 1.19063 0.94531 0.88917 0.96202 1.86463 1.19026 1.51410 1.61810 1.22585 1.03862 0.90275 0.99567 1.22956 0.93139 1.02550 1.01844 1.22978 0.97168 0.99925 1.01729 0.92778 0.90780 0.90580 0.95993 0.92594 0.78520 0.93681 0.76965 0.89815 0.85564 0.84868 0.85144 0.85042 0.84504 0.87110 0.89474 0.89278 0.89154 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.18 37.15 0.30 -1.73 16 2 C 0.20 3.13 0.55 -131.82 -0.07 3.06 16 3 C 0.14 2.88 4.84 -4.04 -0.02 2.86 16 4 N -0.73 -18.22 5.18 -59.90 -0.31 -18.53 16 5 C -0.23 -6.58 9.99 -15.06 -0.15 -6.73 16 6 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 7 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.21 13.06 55.49 0.72 -27.49 16 9 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.71 -10.21 4.19 -47.61 -0.20 -10.41 16 14 C 0.53 8.83 4.43 -10.99 -0.05 8.78 16 15 O -0.49 -10.05 12.79 -14.15 -0.18 -10.23 16 16 C 0.03 0.47 3.44 -27.64 -0.10 0.37 16 17 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 18 C 0.03 0.39 5.93 37.40 0.22 0.61 16 19 O -0.30 -3.81 10.42 -32.86 -0.34 -4.15 16 20 C 0.04 0.58 6.49 -39.14 -0.25 0.32 16 21 C -0.11 -1.22 9.96 -39.42 -0.39 -1.62 16 22 C -0.12 -1.13 10.04 -39.59 -0.40 -1.53 16 23 C -0.11 -1.15 10.04 -39.59 -0.40 -1.54 16 24 C -0.11 -1.42 9.96 -39.43 -0.39 -1.81 16 25 C 0.06 0.86 6.49 -39.14 -0.25 0.60 16 26 O -0.27 -4.64 9.62 -47.04 -0.45 -5.09 16 27 C -0.14 -1.95 4.86 -90.61 -0.44 -2.39 16 28 C -0.17 -2.12 8.52 -26.72 -0.23 -2.35 16 29 C -0.18 -1.92 9.68 -26.72 -0.26 -2.18 16 30 H 0.05 0.58 6.89 -51.93 -0.36 0.23 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.23 6.86 -51.93 -0.36 0.87 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 1.33 5.73 -51.93 -0.30 1.03 16 35 H 0.38 9.71 6.35 -40.82 -0.26 9.45 16 36 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.40 4.61 8.48 -40.82 -0.35 4.26 16 38 H 0.08 0.93 7.41 -51.93 -0.38 0.55 16 39 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.11 1.54 8.06 -51.93 -0.42 1.12 16 45 H 0.09 1.11 3.72 -51.93 -0.19 0.92 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.09 0.88 7.17 -51.93 -0.37 0.51 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -34.86 382.92 -9.75 -44.60 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -6.76 Total: 13.34 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.97 Total: -5.81 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.22 Total: -56.43 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.98 Total: -19.47 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.86 -9.75 -44.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714176609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.027 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds