Wall clock time and date at job start Wed Apr 1 2020 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 N 1.46508 * 109.46724 * 299.99912 * 3 2 1 5 5 C 1.36945 * 119.99740 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99962 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99747 * 180.02562 * 5 4 3 8 8 N 1.31615 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99780 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47051 * 59.99894 * 9 7 5 11 11 H 1.48495 * 109.46983 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46866 * 299.99722 * 9 7 5 13 13 N 1.46502 * 109.47125 * 240.00012 * 2 1 3 14 14 C 1.34775 * 120.00087 * 175.42495 * 13 2 1 15 15 O 1.21281 * 119.99997 * 355.97413 * 14 13 2 16 16 C 1.50695 * 120.00023 * 175.98140 * 14 13 2 17 17 H 1.09000 * 109.70486 * 54.41675 * 16 14 13 18 18 C 1.53470 * 109.70377 * 293.79566 * 16 14 13 19 19 O 1.43181 * 108.23801 * 180.59957 * 18 16 14 20 20 C 1.36103 * 116.69325 * 46.29326 * 19 18 16 21 21 C 1.38700 * 119.39927 * 162.83704 * 20 19 18 22 22 C 1.38200 * 120.06951 * 179.63540 * 21 20 19 23 23 C 1.38247 * 120.11053 * 0.02562 * 22 21 20 24 24 C 1.38201 * 120.11341 * 0.07331 * 23 22 21 25 25 C 1.38697 * 120.07108 * 359.95133 * 24 23 22 26 26 O 1.36105 * 119.40409 * 179.79879 * 25 24 23 27 27 C 1.53000 * 109.47304 * 119.99559 * 2 1 3 28 28 C 1.53008 * 117.49693 * 121.77368 * 27 2 1 29 29 C 1.53006 * 117.49512 * 53.15263 * 27 2 1 30 30 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47273 * 299.99618 * 1 2 3 32 32 H 1.08994 * 109.47482 * 60.00329 * 1 2 3 33 33 H 1.09000 * 109.47287 * 59.99692 * 3 2 1 34 34 H 1.08995 * 109.47665 * 180.02562 * 3 2 1 35 35 H 0.96993 * 119.99815 * 0.02562 * 4 3 2 36 36 H 0.97004 * 119.99864 * 180.02562 * 8 7 5 37 37 H 0.97003 * 119.99765 * 355.41813 * 13 2 1 38 38 H 1.08996 * 109.70846 * 300.28257 * 18 16 14 39 39 H 1.08994 * 109.71155 * 60.91298 * 18 16 14 40 40 H 1.07999 * 119.96324 * 359.90503 * 21 20 19 41 41 H 1.07999 * 119.94181 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.94368 * 180.02562 * 23 22 21 43 43 H 1.08008 * 119.96283 * 179.97438 * 24 23 22 44 44 H 1.08995 * 115.55612 * 267.48102 * 27 2 1 45 45 H 1.09001 * 117.49674 * 359.97438 * 28 27 2 46 46 H 1.08999 * 117.49768 * 145.02373 * 28 27 2 47 47 H 1.08995 * 117.49646 * 214.97715 * 29 27 2 48 48 H 1.08995 * 117.49828 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5515 2.1330 -1.1963 5 6 1.8819 3.4443 -1.4127 6 1 2.5028 3.9691 -0.7019 7 6 1.4188 4.0987 -2.5459 8 7 0.6617 3.4591 -3.4120 9 14 1.8700 5.8871 -2.8416 10 1 3.3467 6.0168 -2.9307 11 1 1.2555 6.3492 -4.1120 12 1 1.3671 6.7169 -1.7173 13 7 2.0183 -0.6906 -1.1962 14 6 3.3398 -0.7338 -1.4571 15 8 4.1188 -0.1395 -0.7422 16 6 3.8496 -1.5202 -2.6372 17 1 3.3412 -1.1930 -3.5441 18 6 3.5944 -3.0165 -2.4110 19 8 4.1021 -3.7336 -3.5415 20 6 5.3450 -3.3891 -3.9761 21 6 6.0386 -4.2535 -4.8101 22 6 7.2984 -3.9142 -5.2658 23 6 7.8711 -2.7129 -4.8913 24 6 7.1863 -1.8480 -4.0589 25 6 5.9218 -2.1826 -3.5976 26 8 5.2613 -1.3225 -2.7751 27 6 2.0400 -0.7211 1.2493 28 6 2.9493 -1.9343 1.0429 29 6 1.5081 -2.1304 1.5181 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5137 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 0.9936 1.6617 -1.8345 36 1 0.3383 3.9164 -4.2040 37 1 1.3904 -1.1169 -1.8004 38 1 4.1075 -3.3444 -1.5070 39 1 2.5239 -3.1961 -2.3123 40 1 5.5918 -5.1907 -5.1073 41 1 7.8364 -4.5886 -5.9154 42 1 8.8556 -2.4503 -5.2493 43 1 7.6362 -0.9103 -3.7675 44 1 2.2375 -0.0848 2.1118 45 1 3.1837 -2.2188 0.0172 46 1 3.7452 -2.0961 1.7698 47 1 1.3561 -2.4211 2.5575 48 1 0.7946 -2.5435 0.8052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714176609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:14 Heat of formation + Delta-G solvation = -43.551805 kcal Electronic energy + Delta-G solvation = -31768.292554 eV Core-core repulsion = 27597.150043 eV Total energy + Delta-G solvation = -4171.142512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.64476 -41.49265 -39.00026 -38.50178 -37.97936 -36.62000 -35.05643 -33.68277 -32.31766 -31.65999 -31.04285 -29.49266 -27.68310 -26.45268 -25.55408 -23.90058 -23.22466 -23.18341 -22.79610 -21.51823 -20.49628 -19.86687 -19.32431 -19.02551 -18.39732 -17.45690 -17.17207 -16.95057 -16.46445 -16.34056 -16.24098 -15.76617 -15.65395 -15.39773 -15.20019 -15.03513 -14.90102 -14.81811 -14.58279 -14.37056 -13.60066 -13.54760 -13.32874 -13.14887 -13.01877 -12.87311 -12.80861 -12.51942 -12.37244 -12.34299 -12.22494 -12.10205 -12.01806 -11.80380 -11.66067 -11.25363 -11.11986 -10.96117 -10.49841 -10.07180 -9.68901 -9.15257 -8.93825 -7.97400 -5.22652 0.26844 0.27384 1.33673 1.42056 1.45113 1.50928 1.54069 1.96552 2.44995 2.53168 2.71702 2.91278 3.04302 3.35175 3.46233 3.53096 3.59611 3.61975 3.95416 3.96463 4.02642 4.10869 4.15252 4.22593 4.30334 4.33965 4.35111 4.40626 4.51454 4.55306 4.78296 4.80078 4.83598 4.90534 4.97113 5.05968 5.14786 5.17015 5.19238 5.26500 5.31874 5.36616 5.45153 5.48595 5.61306 5.67823 5.79369 6.25941 6.29181 6.49527 7.18337 7.33405 8.08078 8.36654 9.25340 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.003816 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.690973 B = 7336.554450 C = 9447.264808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.212 3.788 3 C 0.137 3.863 4 N -0.729 5.729 5 C -0.245 4.245 6 H 0.061 0.939 7 C -0.067 4.067 8 N -0.962 5.962 9 Si 0.966 3.034 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.698 5.698 14 C 0.533 3.467 15 O -0.537 6.537 16 C 0.031 3.969 17 H 0.107 0.893 18 C 0.044 3.956 19 O -0.304 6.304 20 C 0.026 3.974 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.133 4.133 25 C 0.022 3.978 26 O -0.310 6.310 27 C -0.166 4.166 28 C -0.179 4.179 29 C -0.142 4.142 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.026 0.974 35 H 0.378 0.622 36 H 0.251 0.749 37 H 0.412 0.588 38 H 0.084 0.916 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.129 0.871 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -22.526 1.041 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.126 3.874 3 C 0.010 3.990 4 N -0.372 5.372 5 C -0.377 4.377 6 H 0.079 0.921 7 C -0.260 4.260 8 N -0.613 5.613 9 Si 0.795 3.205 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.352 5.352 14 C 0.318 3.682 15 O -0.413 6.413 16 C -0.029 4.029 17 H 0.124 0.876 18 C -0.031 4.031 19 O -0.218 6.218 20 C -0.019 4.019 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.022 4.022 26 O -0.225 6.225 27 C -0.185 4.185 28 C -0.216 4.216 29 C -0.179 4.179 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.211 0.789 36 H 0.060 0.940 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.180 0.820 40 H 0.175 0.825 41 H 0.188 0.812 42 H 0.180 0.820 43 H 0.147 0.853 44 H 0.119 0.881 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.128 0.872 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.242 -21.923 1.652 22.854 hybrid contribution -0.179 1.634 -0.552 1.734 sum 6.063 -20.289 1.100 21.204 Atomic orbital electron populations 1.21937 0.90960 1.03699 1.03095 1.19929 0.94944 0.89524 0.83010 1.21229 0.97462 0.91145 0.89156 1.42281 1.61023 1.09692 1.24235 1.19489 1.24631 0.89226 1.04346 0.92146 1.25383 1.01189 1.02046 0.97385 1.69755 1.40712 1.37437 1.13415 0.85327 0.77337 0.80784 0.77025 1.21453 1.21489 1.20301 1.45761 1.05804 1.56656 1.26976 1.19577 0.83382 0.80805 0.84456 1.90708 1.56853 1.43838 1.49925 1.23032 0.82084 0.98196 0.99581 0.87551 1.23710 1.04063 0.86986 0.88371 1.86297 1.28843 1.59630 1.47061 1.19257 0.87370 0.93564 1.01706 1.20843 0.94850 0.99471 0.98188 1.21394 0.94051 0.97248 1.00006 1.21321 1.01071 0.93741 0.96545 1.20763 0.92788 1.01972 0.99690 1.19432 0.95465 0.89779 0.97544 1.86392 1.20068 1.53026 1.63013 1.22438 1.06293 0.91490 0.98298 1.22980 0.94575 1.02215 1.01847 1.23098 0.95535 0.95910 1.03323 0.88712 0.90627 0.93131 0.96396 0.95659 0.78877 0.93991 0.75110 0.89804 0.82003 0.82547 0.81229 0.82039 0.85327 0.88071 0.89729 0.89721 0.87213 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.18 71.98 0.59 -3.06 16 2 C 0.21 6.53 0.55 3.60 0.00 6.53 16 3 C 0.14 6.01 4.84 86.38 0.42 6.42 16 4 N -0.73 -37.90 5.18 -343.44 -1.78 -39.68 16 5 C -0.24 -14.45 9.99 84.03 0.84 -13.61 16 6 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 8 N -0.96 -58.79 13.06 21.65 0.28 -58.51 16 9 Si 0.97 48.07 29.55 68.60 2.03 50.09 16 10 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 N -0.70 -20.03 4.19 -422.94 -1.77 -21.80 16 14 C 0.53 18.33 4.43 87.66 0.39 18.72 16 15 O -0.54 -23.51 12.79 15.82 0.20 -23.31 16 16 C 0.03 0.95 3.44 30.00 0.10 1.06 16 17 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 18 C 0.04 0.96 5.93 72.14 0.43 1.39 16 19 O -0.30 -7.37 10.42 -82.50 -0.86 -8.23 16 20 C 0.03 0.67 6.49 22.56 0.15 0.81 16 21 C -0.12 -2.23 9.96 22.37 0.22 -2.00 16 22 C -0.11 -1.70 10.04 22.26 0.22 -1.47 16 23 C -0.11 -1.98 10.04 22.26 0.22 -1.76 16 24 C -0.13 -3.50 9.96 22.37 0.22 -3.27 16 25 C 0.02 0.68 6.49 22.56 0.15 0.83 16 26 O -0.31 -11.26 9.62 -68.95 -0.66 -11.92 16 27 C -0.17 -4.39 4.86 -10.79 -0.05 -4.44 16 28 C -0.18 -4.38 8.52 30.60 0.26 -4.12 16 29 C -0.14 -2.56 9.68 30.60 0.30 -2.27 16 30 H 0.09 1.70 6.89 -2.39 -0.02 1.68 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.05 1.60 6.86 -2.39 -0.02 1.58 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.03 1.29 5.73 -2.39 -0.01 1.27 16 35 H 0.38 19.84 6.35 -92.71 -0.59 19.25 16 36 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 37 H 0.41 9.10 8.48 -92.71 -0.79 8.31 16 38 H 0.08 1.83 7.41 -2.39 -0.02 1.81 16 39 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 44 H 0.10 2.85 8.06 -2.39 -0.02 2.83 16 45 H 0.08 2.11 3.72 -2.39 -0.01 2.10 16 46 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.11 1.60 7.17 -2.39 -0.02 1.59 16 Total: -1.00 -79.96 382.92 2.00 -77.96 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.37 Total: 39.14 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 4.92 Total: -3.75 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -3.27 Total: -119.99 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.32 Total: -43.46 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.09 kcal Total: -79.96 2.00 -77.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714176609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.409 kcal (2) G-P(sol) polarization free energy of solvation -79.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds