Wall clock time and date at job start Wed Apr 1 2020 03:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00179 * 2 1 4 4 O 1.20829 * 119.99876 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99890 * 180.02562 * 3 2 1 6 6 O 1.42906 * 109.46931 * 179.97438 * 5 3 2 7 7 C 1.35893 * 116.99967 * 179.97438 * 6 5 3 8 8 C 1.38731 * 120.05890 * 180.02562 * 7 6 5 9 9 C 1.38138 * 119.94649 * 179.97438 * 8 7 6 10 10 C 1.38262 * 120.05900 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.94808 * 180.02562 * 10 9 8 12 12 H 1.09006 * 109.46792 * 339.99238 * 11 10 9 13 13 C 1.52999 * 109.47548 * 99.99563 * 11 10 9 14 14 N 1.46904 * 109.47029 * 219.99816 * 11 10 9 15 15 C 1.46896 * 111.00016 * 154.99452 * 14 11 10 16 16 C 1.53002 * 109.47181 * 179.97438 * 15 14 11 17 17 H 1.09002 * 109.47070 * 305.00230 * 16 15 14 18 18 C 1.47201 * 109.46938 * 65.00082 * 16 15 14 19 19 N 9.69005 * 143.40780 * 50.04141 * 3 1 2 20 20 C 1.53000 * 109.47233 * 184.99855 * 16 15 14 21 21 C 1.50698 * 109.46984 * 175.00062 * 20 16 15 22 22 H 1.08008 * 120.00253 * 0.02562 * 21 20 16 23 23 C 1.37881 * 120.00032 * 180.02562 * 21 20 16 24 24 N 1.31516 * 119.99811 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99974 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47344 * 89.99767 * 25 23 21 27 27 H 1.48499 * 109.46707 * 209.99826 * 25 23 21 28 28 H 1.48500 * 109.47223 * 329.99502 * 25 23 21 29 29 C 1.38263 * 120.10849 * 0.26957 * 10 9 8 30 30 C 1.38148 * 120.05640 * 359.45509 * 29 10 9 31 31 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47102 * 300.00655 * 1 2 3 33 33 H 1.09004 * 109.47259 * 60.00405 * 1 2 3 34 34 H 1.08995 * 109.47074 * 59.99431 * 5 3 2 35 35 H 1.09001 * 109.47097 * 299.99297 * 5 3 2 36 36 H 1.08001 * 120.02398 * 359.95964 * 8 7 6 37 37 H 1.08008 * 119.97017 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.47203 * 59.99916 * 13 11 10 39 39 H 1.08999 * 109.46757 * 180.02562 * 13 11 10 40 40 H 1.08998 * 109.47082 * 299.99716 * 13 11 10 41 41 H 1.00896 * 110.99668 * 278.94910 * 14 11 10 42 42 H 1.09008 * 109.47165 * 59.99956 * 15 14 11 43 43 H 1.08997 * 109.47437 * 299.99850 * 15 14 11 44 44 H 1.08990 * 109.47170 * 295.00238 * 20 16 15 45 45 H 1.09001 * 109.46952 * 55.00315 * 20 16 15 46 46 H 0.96997 * 119.99784 * 180.02562 * 24 23 21 47 47 H 1.08003 * 119.96967 * 179.70665 * 29 10 9 48 48 H 1.07998 * 120.02981 * 180.27004 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 8 3.9716 2.6452 -0.0011 7 6 5.3076 2.8934 -0.0011 8 6 5.7714 4.2009 -0.0010 9 6 7.1301 4.4506 -0.0005 10 6 8.0275 3.3989 -0.0006 11 6 9.5091 3.6742 0.0006 12 1 9.6901 4.6902 -0.3503 13 6 10.0555 3.5203 1.4214 14 7 10.1850 2.7210 -0.8899 15 6 11.4533 3.2720 -1.3855 16 6 12.1267 2.2528 -2.3068 17 1 12.2408 1.3059 -1.7792 18 6 11.2956 2.0501 -3.5047 19 7 10.6527 1.8914 -4.4277 20 6 13.5036 2.7737 -2.7236 21 6 14.2167 1.7189 -3.5297 22 1 13.7358 0.7718 -3.7255 23 6 15.4832 1.9628 -4.0172 24 7 16.0686 3.1162 -3.7791 25 14 16.3669 0.6555 -5.0170 26 1 16.0480 0.8334 -6.4563 27 1 17.8325 0.7846 -4.8150 28 1 15.9229 -0.6906 -4.5743 29 6 7.5679 2.0949 -0.0068 30 6 6.2102 1.8398 -0.0016 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.9557 0.7807 -0.8907 35 1 3.9564 0.7805 0.8892 36 1 5.0708 5.0228 -0.0016 37 1 7.4916 5.4684 0.0000 38 1 9.8744 2.5043 1.7722 39 1 11.1270 3.7199 1.4221 40 1 9.5541 4.2275 2.0820 41 1 10.3311 1.8360 -0.4280 42 1 12.1095 3.4885 -0.5425 43 1 11.2587 4.1902 -1.9396 44 1 13.3843 3.6734 -3.3271 45 1 14.0880 3.0079 -1.8338 46 1 16.9594 3.2879 -4.1224 47 1 8.2709 1.2751 -0.0117 48 1 5.8516 0.8211 -0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185647503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:22 Heat of formation + Delta-G solvation = -76.269241 kcal Electronic energy + Delta-G solvation = -28461.792648 eV Core-core repulsion = 24289.231402 eV Total energy + Delta-G solvation = -4172.561246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14699 -40.28219 -38.62054 -37.23686 -36.81156 -35.50440 -33.71693 -32.31770 -31.32789 -30.66584 -29.77359 -28.51406 -27.37602 -26.26944 -23.72796 -23.40596 -22.53685 -21.78642 -21.38754 -20.57250 -18.88579 -17.78934 -17.45300 -17.42277 -17.06931 -16.42136 -15.93203 -15.86140 -15.78394 -14.91745 -14.71844 -14.55814 -14.27690 -14.00862 -13.84919 -13.79382 -13.49846 -13.33593 -13.08250 -12.91569 -12.67444 -12.56866 -12.51986 -12.28499 -11.98306 -11.82205 -11.63055 -11.36103 -11.29247 -11.25902 -11.12862 -11.05420 -11.04066 -10.82294 -10.69275 -10.53001 -10.24345 -9.55928 -9.24365 -9.14340 -8.47501 -8.38904 -8.22856 -6.10901 -4.14018 1.18553 1.26797 1.61290 1.63796 3.14005 3.28967 3.35684 3.38600 3.57227 3.75153 3.84633 4.10548 4.20659 4.40793 4.41353 4.45637 4.59065 4.66533 4.68071 4.69901 4.72368 4.90585 5.00571 5.03817 5.14928 5.24146 5.27342 5.28065 5.42962 5.55975 5.60032 5.62749 5.75317 5.78494 5.87713 5.96121 6.02559 6.09054 6.21961 6.35708 6.44835 6.52084 6.55858 7.02454 7.10388 7.18739 7.40179 7.44446 7.52076 7.84330 8.21835 8.59658 8.90749 9.51547 10.99926 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.001695 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.828982 B =16513.380779 C =17590.144955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.070 3.930 6 O -0.298 6.298 7 C 0.117 3.883 8 C -0.144 4.144 9 C -0.076 4.076 10 C -0.094 4.094 11 C 0.125 3.875 12 H 0.088 0.912 13 C -0.178 4.178 14 N -0.686 5.686 15 C 0.067 3.933 16 C 0.010 3.990 17 H 0.098 0.902 18 C 0.254 3.746 19 N -0.478 5.478 20 C 0.032 3.968 21 C -0.527 4.527 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.891 5.891 25 Si 0.891 3.109 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.273 1.273 29 C -0.056 4.056 30 C -0.208 4.208 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.341 0.659 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.262 0.738 47 H 0.127 0.873 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.569 -2.799 15.591 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.304 3.696 4 O -0.369 6.369 5 C -0.007 4.007 6 O -0.212 6.212 7 C 0.073 3.927 8 C -0.163 4.163 9 C -0.094 4.094 10 C -0.094 4.094 11 C 0.015 3.985 12 H 0.106 0.894 13 C -0.237 4.237 14 N -0.316 5.316 15 C -0.063 4.063 16 C -0.012 4.012 17 H 0.116 0.884 18 C -0.063 4.063 19 N -0.155 5.155 20 C -0.007 4.007 21 C -0.565 4.565 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.530 5.530 25 Si 0.719 3.281 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.198 1.198 29 C -0.074 4.074 30 C -0.227 4.227 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.145 0.855 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -26.127 -2.312 13.602 29.546 hybrid contribution 1.257 -0.892 0.458 1.608 sum -24.870 -3.204 14.060 28.748 Atomic orbital electron populations 1.23354 0.75181 1.04140 1.02944 1.86447 1.24172 1.32340 1.84345 1.23025 0.91055 0.81949 0.73531 1.90732 1.66679 1.36189 1.43260 1.21830 0.88761 0.84445 1.05650 1.86048 1.21403 1.24249 1.89497 1.18911 0.80858 0.94459 0.98469 1.20335 0.95740 0.93969 1.06227 1.20828 0.91574 0.99116 0.97923 1.19767 0.95098 0.93108 1.01470 1.20386 0.89628 0.97315 0.91195 0.89434 1.22492 1.01574 1.02411 0.97179 1.60627 1.24453 1.05803 1.40759 1.22109 0.88716 0.98065 0.97424 1.19209 0.94622 1.00135 0.87253 0.88367 1.28847 0.91449 0.92066 0.93898 1.80985 1.12573 1.09829 1.12128 1.19163 0.86769 0.97088 0.97682 1.21145 1.00602 1.01012 1.33724 0.92510 1.24951 0.97450 0.95495 0.96056 1.69936 1.14955 1.22569 1.45523 0.86593 0.78758 0.82073 0.80654 1.20648 1.21115 1.19773 1.20719 0.94171 0.96758 0.95774 1.21214 0.94195 0.98022 1.09256 0.87553 0.91581 0.91536 0.87404 0.87504 0.85208 0.85262 0.92276 0.91822 0.92029 0.84053 0.93091 0.90424 0.95560 0.94455 0.92806 0.85507 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.61 10.56 -39.25 -0.41 -3.03 16 3 C 0.46 4.22 8.03 36.01 0.29 4.51 16 4 O -0.48 -6.10 16.25 -25.48 -0.41 -6.52 16 5 C 0.07 0.52 5.33 36.01 0.19 0.71 16 6 O -0.30 -3.24 9.67 -39.36 -0.38 -3.62 16 7 C 0.12 1.25 6.69 -39.22 -0.26 0.99 16 8 C -0.14 -1.52 9.99 -39.44 -0.39 -1.91 16 9 C -0.08 -0.76 9.66 -39.61 -0.38 -1.14 16 10 C -0.09 -0.98 4.96 -104.61 -0.52 -1.50 16 11 C 0.12 1.25 2.79 -68.87 -0.19 1.06 16 12 H 0.09 0.89 7.66 -51.93 -0.40 0.49 16 13 C -0.18 -1.49 9.14 37.16 0.34 -1.15 16 14 N -0.69 -8.12 5.40 -107.95 -0.58 -8.70 16 15 C 0.07 0.91 4.85 -3.83 -0.02 0.89 16 16 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 17 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 18 C 0.25 5.22 13.67 -20.76 -0.28 4.94 16 19 N -0.48 -10.82 18.54 42.15 0.78 -10.04 16 20 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 21 C -0.53 -13.82 8.60 -34.44 -0.30 -14.12 16 22 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 25 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 29 C -0.06 -0.57 9.32 -39.61 -0.37 -0.94 16 30 C -0.21 -1.99 9.04 -39.43 -0.36 -2.35 16 31 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.32 8.13 -51.92 -0.42 -0.11 16 33 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.11 0.61 7.66 -51.93 -0.40 0.21 16 35 H 0.11 0.52 7.66 -51.93 -0.40 0.12 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.05 8.03 -52.48 -0.42 0.63 16 38 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.06 0.54 7.45 -51.93 -0.39 0.16 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.34 3.55 7.81 -39.29 -0.31 3.25 16 42 H 0.05 0.63 7.44 -51.92 -0.39 0.24 16 43 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.13 1.16 7.23 -52.48 -0.38 0.79 16 48 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 LS Contribution 413.77 15.07 6.24 6.24 Total: -1.00 -34.05 413.77 -7.85 -41.90 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.16 Total: -1.24 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.63 Total: -6.61 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.94 Total: -43.24 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.21 Total: -13.16 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.05 -7.85 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185647503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.371 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds