Wall clock time and date at job start Wed Apr 1 2020 05:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99810 * 2 1 4 4 C 1.50703 * 109.46609 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00217 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99922 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.55429 * 3.49214 * 6 4 3 8 8 C 1.53423 * 107.78328 * 224.73908 * 7 6 4 9 9 C 1.52840 * 108.87050 * 296.77412 * 8 7 6 10 10 C 1.50613 * 110.51447 * 51.44050 * 9 8 7 11 11 C 1.38586 * 118.86378 * 159.40487 * 10 9 8 12 12 C 1.37986 * 120.40048 * 179.56622 * 11 10 9 13 13 C 1.38940 * 120.08335 * 0.02562 * 12 11 10 14 14 N 1.39929 * 120.12610 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99815 * 324.37389 * 14 13 12 16 16 O 1.21286 * 119.99897 * 4.57025 * 15 14 13 17 17 C 1.50698 * 120.00162 * 184.56124 * 15 14 13 18 18 H 1.08994 * 109.47702 * 300.00771 * 17 15 14 19 19 C 1.53005 * 109.46937 * 60.00417 * 17 15 14 20 20 C 1.50698 * 109.47347 * 180.02562 * 17 15 14 21 21 H 1.08003 * 120.00147 * 333.98671 * 20 17 15 22 22 C 1.37878 * 120.00189 * 153.99416 * 20 17 15 23 23 N 1.31512 * 119.99803 * 174.65942 * 22 20 17 24 24 Si 1.86799 * 119.99773 * 354.65003 * 22 20 17 25 25 H 1.48497 * 109.47475 * 275.13670 * 24 22 20 26 26 H 1.48503 * 109.47059 * 35.13862 * 24 22 20 27 27 H 1.48500 * 109.46897 * 155.13423 * 24 22 20 28 28 C 1.38667 * 119.75349 * 0.33800 * 13 12 11 29 29 C 1.38640 * 121.46788 * 339.15688 * 10 9 8 30 30 H 1.08993 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47073 * 300.00085 * 1 2 3 32 32 H 1.09007 * 109.47071 * 59.99855 * 1 2 3 33 33 H 1.08991 * 109.47401 * 60.00201 * 3 2 1 34 34 H 1.08995 * 109.47046 * 299.99593 * 3 2 1 35 35 H 1.09003 * 109.79797 * 344.30804 * 7 6 4 36 36 H 1.08999 * 109.79666 * 105.10349 * 7 6 4 37 37 H 1.09003 * 109.57513 * 56.59417 * 8 7 6 38 38 H 1.09000 * 109.57372 * 176.83704 * 8 7 6 39 39 H 1.09001 * 109.27000 * 291.17170 * 9 8 7 40 40 H 1.09002 * 109.26827 * 171.70546 * 9 8 7 41 41 H 1.07995 * 119.79435 * 359.54615 * 11 10 9 42 42 H 1.07997 * 119.95816 * 180.02562 * 12 11 10 43 43 H 0.96999 * 120.00228 * 144.37164 * 14 13 12 44 44 H 1.09000 * 109.46880 * 54.93422 * 19 17 15 45 45 H 1.08992 * 109.47339 * 174.93666 * 19 17 15 46 46 H 1.09006 * 109.46811 * 294.93805 * 19 17 15 47 47 H 0.97001 * 119.99768 * 179.97438 * 23 22 20 48 48 H 1.08006 * 120.00690 * 179.73569 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 3.6595 3.6280 0.0762 8 6 4.3518 4.5251 -0.9580 9 6 5.8258 4.6686 -0.5801 10 6 6.4476 3.3152 -0.3568 11 6 7.8258 3.1913 -0.4334 12 6 8.4296 1.9681 -0.2255 13 6 7.6568 0.8499 0.0623 14 7 8.2682 -0.3908 0.2739 15 6 9.3645 -0.7309 -0.4323 16 8 9.8699 0.0695 -1.1905 17 6 9.9627 -2.1057 -0.2797 18 1 10.2593 -2.2598 0.7576 19 6 8.9264 -3.1595 -0.6757 20 6 11.1714 -2.2294 -1.1711 21 1 11.2508 -1.6223 -2.0608 22 6 12.1761 -3.1178 -0.8510 23 7 13.1794 -3.3026 -1.6808 24 14 12.1121 -4.0585 0.7616 25 1 12.6944 -3.2255 1.8442 26 1 10.7004 -4.3816 1.0905 27 1 12.8904 -5.3166 0.6319 28 6 6.2768 0.9667 0.1327 29 6 5.6732 2.2008 -0.0732 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 2.5958 3.5554 -0.1511 36 1 3.7959 4.0416 1.0754 37 1 4.2706 4.0727 -1.9465 38 1 3.8778 5.5066 -0.9657 39 1 5.9071 5.2571 0.3338 40 1 6.3552 5.1794 -1.3844 41 1 8.4308 4.0574 -0.6576 42 1 9.5042 1.8798 -0.2865 43 1 7.9030 -1.0061 0.9288 44 1 8.5633 -2.9517 -1.6822 45 1 9.3857 -4.1476 -0.6519 46 1 8.0919 -3.1296 0.0250 47 1 13.8864 -3.9274 -1.4554 48 1 5.6718 0.0993 0.3519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888032862.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:29 Heat of formation + Delta-G solvation = -67.804240 kcal Electronic energy + Delta-G solvation = -30534.901450 eV Core-core repulsion = 26362.707274 eV Total energy + Delta-G solvation = -4172.194176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35031 -39.68615 -38.68866 -37.62580 -36.64426 -34.22418 -33.71262 -33.25220 -31.30927 -30.84973 -29.22818 -28.72786 -26.47010 -25.65168 -25.18218 -23.75354 -23.10854 -22.17540 -20.92096 -19.90341 -18.94418 -17.81506 -17.64925 -16.92614 -16.84663 -16.59857 -16.19627 -15.80558 -15.47307 -15.24888 -14.95511 -14.84778 -14.47632 -14.24405 -13.79404 -13.60412 -13.49311 -13.36183 -13.24357 -13.01384 -12.80526 -12.50661 -12.43796 -12.18425 -11.97040 -11.71076 -11.60182 -11.49992 -11.34328 -11.09906 -11.04497 -10.60553 -10.48416 -10.29243 -10.27631 -9.78183 -9.60496 -9.34396 -9.12591 -8.70012 -8.53126 -8.09028 -7.54659 -6.04501 -4.04279 1.38198 1.57035 2.20301 2.35006 3.26976 3.34820 3.35443 3.36564 3.48903 3.74321 3.99547 4.09642 4.25494 4.40958 4.43222 4.52939 4.58991 4.64581 4.84707 4.90073 4.92759 4.94510 5.15207 5.23000 5.24176 5.24760 5.36037 5.48338 5.58214 5.66363 5.74706 5.82316 5.84988 6.03516 6.17520 6.19940 6.40591 6.46292 6.53512 6.55128 6.68133 6.76037 6.87860 6.92598 7.12286 7.22075 7.43195 7.56521 7.81303 8.06860 8.54505 9.02274 9.12816 9.54647 11.08502 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.002775 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.748622 B =10089.150386 C =11785.465802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.047 3.953 4 C 0.511 3.489 5 O -0.488 6.488 6 N -0.550 5.550 7 C 0.100 3.900 8 C -0.135 4.135 9 C -0.071 4.071 10 C -0.144 4.144 11 C -0.083 4.083 12 C -0.138 4.138 13 C 0.178 3.822 14 N -0.687 5.687 15 C 0.522 3.478 16 O -0.509 6.509 17 C 0.000 4.000 18 H 0.054 0.946 19 C -0.137 4.137 20 C -0.500 4.500 21 H 0.089 0.911 22 C 0.073 3.927 23 N -0.894 5.894 24 Si 0.868 3.132 25 H -0.276 1.276 26 H -0.261 1.261 27 H -0.286 1.286 28 C -0.191 4.191 29 C 0.165 3.835 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.406 0.594 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.265 0.735 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.488 16.841 6.909 32.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.032 4.032 4 C 0.299 3.701 5 O -0.361 6.361 6 N -0.276 5.276 7 C -0.022 4.022 8 C -0.173 4.173 9 C -0.109 4.109 10 C -0.147 4.147 11 C -0.102 4.102 12 C -0.159 4.159 13 C 0.082 3.918 14 N -0.333 5.333 15 C 0.312 3.688 16 O -0.382 6.382 17 C -0.022 4.022 18 H 0.072 0.928 19 C -0.195 4.195 20 C -0.538 4.538 21 H 0.107 0.893 22 C -0.129 4.129 23 N -0.532 5.532 24 Si 0.695 3.305 25 H -0.201 1.201 26 H -0.186 1.186 27 H -0.212 1.212 28 C -0.213 4.213 29 C 0.072 3.928 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.143 0.857 42 H 0.159 0.841 43 H 0.242 0.758 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -26.576 16.445 6.289 31.879 hybrid contribution -0.303 -0.502 1.118 1.262 sum -26.879 15.943 7.407 32.117 Atomic orbital electron populations 1.22863 0.80062 1.03611 1.00120 1.88045 1.20003 1.24786 1.95398 1.22246 0.90981 0.87365 1.02656 1.20383 0.88876 0.83788 0.77005 1.90506 1.72711 1.26613 1.46294 1.45500 1.04850 1.06903 1.70334 1.22047 0.97502 0.81758 1.00881 1.21872 0.96275 0.99998 0.99196 1.20307 0.94498 0.94003 1.02050 1.19296 0.93619 0.94097 1.07681 1.20722 0.92805 0.97363 0.99302 1.21357 1.01574 0.90836 1.02119 1.17791 0.90943 0.85892 0.97161 1.44063 1.30480 1.16465 1.42264 1.21861 0.77680 0.91226 0.78006 1.90573 1.59250 1.52074 1.36264 1.19306 0.96387 0.87265 0.99250 0.92804 1.22019 0.97110 1.00105 1.00264 1.20778 1.00361 1.22796 1.09866 0.89299 1.24983 0.95165 0.96200 0.96564 1.69887 1.11306 1.36135 1.35850 0.87027 0.78755 0.79871 0.84839 1.20132 1.18562 1.21239 1.22167 0.93553 0.99238 1.06354 1.17233 0.80716 0.94000 1.00846 0.88843 0.93732 0.93703 0.89987 0.89925 0.89334 0.90122 0.90793 0.89720 0.90799 0.90309 0.85712 0.84093 0.75833 0.93055 0.92216 0.95266 0.92533 0.80738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.36 -3.74 10.24 -55.14 -0.56 -4.31 16 3 C 0.05 0.36 4.78 36.01 0.17 0.54 16 4 C 0.51 6.14 7.70 -10.98 -0.08 6.05 16 5 O -0.49 -8.05 13.00 -14.36 -0.19 -8.23 16 6 N -0.55 -5.95 2.97 -112.87 -0.34 -6.28 16 7 C 0.10 0.59 6.26 -3.59 -0.02 0.57 16 8 C -0.14 -0.81 6.11 -26.59 -0.16 -0.97 16 9 C -0.07 -0.58 5.77 -28.01 -0.16 -0.74 16 10 C -0.14 -1.81 5.76 -104.39 -0.60 -2.41 16 11 C -0.08 -1.18 9.65 -39.55 -0.38 -1.56 16 12 C -0.14 -2.45 8.69 -39.41 -0.34 -2.80 16 13 C 0.18 3.24 6.28 -83.74 -0.53 2.71 16 14 N -0.69 -12.94 5.22 -9.90 -0.05 -12.99 16 15 C 0.52 12.03 6.99 -10.99 -0.08 11.95 16 16 O -0.51 -13.38 13.11 5.55 0.07 -13.30 16 17 C 0.00 -0.01 2.19 -92.92 -0.20 -0.21 16 18 H 0.05 1.23 5.84 -51.93 -0.30 0.93 16 19 C -0.14 -2.91 8.71 37.16 0.32 -2.59 16 20 C -0.50 -14.58 8.50 -34.44 -0.29 -14.87 16 21 H 0.09 2.94 7.36 -52.48 -0.39 2.56 16 22 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 23 N -0.89 -27.81 13.96 55.43 0.77 -27.04 16 24 Si 0.87 21.09 26.25 -169.99 -4.46 16.63 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.26 -5.85 6.23 56.52 0.35 -5.50 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 C -0.19 -3.19 8.89 -39.17 -0.35 -3.53 16 29 C 0.17 2.32 6.32 -83.63 -0.53 1.79 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.38 7.97 -51.93 -0.41 -0.03 16 34 H 0.08 0.42 7.69 -51.93 -0.40 0.02 16 35 H 0.09 0.25 6.10 -51.93 -0.32 -0.06 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.60 8.12 -51.93 -0.42 0.17 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.14 2.81 6.27 -52.49 -0.33 2.48 16 43 H 0.41 6.50 8.48 -40.82 -0.35 6.15 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.06 1.29 6.89 -51.93 -0.36 0.93 16 46 H 0.03 0.51 7.83 -51.93 -0.41 0.11 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.18 3.08 4.71 -55.25 -0.26 2.82 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -37.93 383.04 -8.13 -46.06 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.93 Total: 6.46 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.22 Total: -2.76 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.39 Total: -46.31 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.68 Total: -25.85 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.46 Total: 16.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.93 -8.13 -46.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888032862.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.740 kcal (2) G-P(sol) polarization free energy of solvation -37.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds