Wall clock time and date at job start Wed Apr 1 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99810 * 2 1 4 4 C 1.50703 * 109.46609 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00217 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99922 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.55429 * 3.49214 * 6 4 3 8 8 C 1.53423 * 107.78328 * 224.73908 * 7 6 4 9 9 C 1.52840 * 108.87050 * 296.77412 * 8 7 6 10 10 C 1.50613 * 110.51447 * 51.44050 * 9 8 7 11 11 C 1.38586 * 118.86378 * 159.40487 * 10 9 8 12 12 C 1.37986 * 120.40048 * 179.56622 * 11 10 9 13 13 C 1.38940 * 120.08335 * 0.02562 * 12 11 10 14 14 N 1.39929 * 120.12610 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99815 * 324.37389 * 14 13 12 16 16 O 1.21286 * 119.99897 * 4.57025 * 15 14 13 17 17 C 1.50698 * 120.00162 * 184.56124 * 15 14 13 18 18 H 1.08994 * 109.47702 * 300.00771 * 17 15 14 19 19 C 1.53005 * 109.46937 * 60.00417 * 17 15 14 20 20 C 1.50698 * 109.47347 * 180.02562 * 17 15 14 21 21 H 1.08003 * 120.00147 * 333.98671 * 20 17 15 22 22 C 1.37878 * 120.00189 * 153.99416 * 20 17 15 23 23 N 1.31512 * 119.99803 * 174.65942 * 22 20 17 24 24 Si 1.86799 * 119.99773 * 354.65003 * 22 20 17 25 25 H 1.48497 * 109.47475 * 275.13670 * 24 22 20 26 26 H 1.48503 * 109.47059 * 35.13862 * 24 22 20 27 27 H 1.48500 * 109.46897 * 155.13423 * 24 22 20 28 28 C 1.38667 * 119.75349 * 0.33800 * 13 12 11 29 29 C 1.38640 * 121.46788 * 339.15688 * 10 9 8 30 30 H 1.08993 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47073 * 300.00085 * 1 2 3 32 32 H 1.09007 * 109.47071 * 59.99855 * 1 2 3 33 33 H 1.08991 * 109.47401 * 60.00201 * 3 2 1 34 34 H 1.08995 * 109.47046 * 299.99593 * 3 2 1 35 35 H 1.09003 * 109.79797 * 344.30804 * 7 6 4 36 36 H 1.08999 * 109.79666 * 105.10349 * 7 6 4 37 37 H 1.09003 * 109.57513 * 56.59417 * 8 7 6 38 38 H 1.09000 * 109.57372 * 176.83704 * 8 7 6 39 39 H 1.09001 * 109.27000 * 291.17170 * 9 8 7 40 40 H 1.09002 * 109.26827 * 171.70546 * 9 8 7 41 41 H 1.07995 * 119.79435 * 359.54615 * 11 10 9 42 42 H 1.07997 * 119.95816 * 180.02562 * 12 11 10 43 43 H 0.96999 * 120.00228 * 144.37164 * 14 13 12 44 44 H 1.09000 * 109.46880 * 54.93422 * 19 17 15 45 45 H 1.08992 * 109.47339 * 174.93666 * 19 17 15 46 46 H 1.09006 * 109.46811 * 294.93805 * 19 17 15 47 47 H 0.97001 * 119.99768 * 179.97438 * 23 22 20 48 48 H 1.08006 * 120.00690 * 179.73569 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 3.6595 3.6280 0.0762 8 6 4.3518 4.5251 -0.9580 9 6 5.8258 4.6686 -0.5801 10 6 6.4476 3.3152 -0.3568 11 6 7.8258 3.1913 -0.4334 12 6 8.4296 1.9681 -0.2255 13 6 7.6568 0.8499 0.0623 14 7 8.2682 -0.3908 0.2739 15 6 9.3645 -0.7309 -0.4323 16 8 9.8699 0.0695 -1.1905 17 6 9.9627 -2.1057 -0.2797 18 1 10.2593 -2.2598 0.7576 19 6 8.9264 -3.1595 -0.6757 20 6 11.1714 -2.2294 -1.1711 21 1 11.2508 -1.6223 -2.0608 22 6 12.1761 -3.1178 -0.8510 23 7 13.1794 -3.3026 -1.6808 24 14 12.1121 -4.0585 0.7616 25 1 12.6944 -3.2255 1.8442 26 1 10.7004 -4.3816 1.0905 27 1 12.8904 -5.3166 0.6319 28 6 6.2768 0.9667 0.1327 29 6 5.6732 2.2008 -0.0732 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 2.5958 3.5554 -0.1511 36 1 3.7959 4.0416 1.0754 37 1 4.2706 4.0727 -1.9465 38 1 3.8778 5.5066 -0.9657 39 1 5.9071 5.2571 0.3338 40 1 6.3552 5.1794 -1.3844 41 1 8.4308 4.0574 -0.6576 42 1 9.5042 1.8798 -0.2865 43 1 7.9030 -1.0061 0.9288 44 1 8.5633 -2.9517 -1.6822 45 1 9.3857 -4.1476 -0.6519 46 1 8.0919 -3.1296 0.0250 47 1 13.8864 -3.9274 -1.4554 48 1 5.6718 0.0993 0.3519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888032862.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:27 Heat of formation + Delta-G solvation = -95.564643 kcal Electronic energy + Delta-G solvation = -30536.105231 eV Core-core repulsion = 26362.707274 eV Total energy + Delta-G solvation = -4173.397957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30354 -41.19250 -39.71428 -38.37279 -37.74254 -35.76205 -35.53794 -34.25980 -33.30079 -31.85119 -30.33749 -29.46004 -27.26369 -27.02807 -26.40241 -25.13085 -24.22532 -23.46674 -21.80607 -21.41901 -20.12308 -19.12352 -18.79479 -18.63010 -17.66492 -17.44621 -17.32311 -16.88064 -16.63317 -16.34782 -16.17118 -16.02376 -15.74559 -15.52057 -15.07899 -14.75591 -14.54255 -14.41973 -14.19158 -14.10139 -14.06992 -13.95596 -13.67096 -13.26907 -13.16429 -13.02417 -12.89443 -12.59369 -12.40518 -12.30053 -12.25010 -12.05387 -11.83158 -11.73518 -11.40385 -11.29086 -10.86413 -10.77832 -10.76731 -10.50194 -10.33601 -9.29645 -8.75519 -8.30045 -6.37699 0.20478 0.34968 1.35618 1.37219 1.41038 1.48136 1.49093 1.74597 2.19573 2.33883 2.79928 2.88958 3.04704 3.40825 3.74814 3.84734 3.93196 4.01225 4.09746 4.11851 4.21577 4.30645 4.32554 4.36979 4.37641 4.50880 4.52880 4.60125 4.64441 4.71504 4.72954 4.75487 4.81990 4.90715 4.99271 5.04400 5.09905 5.13374 5.31623 5.33971 5.39758 5.47716 5.51544 5.52737 5.65086 6.02327 6.13863 6.21755 6.28860 6.53917 6.75433 6.95952 7.21564 7.33173 8.87629 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.002775 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.748622 B =10089.150386 C =11785.465802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.053 3.947 4 C 0.499 3.501 5 O -0.545 6.545 6 N -0.547 5.547 7 C 0.089 3.911 8 C -0.132 4.132 9 C -0.075 4.075 10 C -0.128 4.128 11 C -0.085 4.085 12 C -0.164 4.164 13 C 0.146 3.854 14 N -0.670 5.670 15 C 0.522 3.478 16 O -0.556 6.556 17 C -0.002 4.002 18 H 0.075 0.925 19 C -0.131 4.131 20 C -0.514 4.514 21 H 0.025 0.975 22 C 0.010 3.990 23 N -0.949 5.949 24 Si 0.944 3.056 25 H -0.267 1.267 26 H -0.223 1.223 27 H -0.283 1.283 28 C -0.201 4.201 29 C 0.161 3.839 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.108 0.892 43 H 0.419 0.581 44 H 0.035 0.965 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.269 0.731 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.122 18.998 9.332 38.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.026 4.026 4 C 0.290 3.710 5 O -0.423 6.423 6 N -0.271 5.271 7 C -0.030 4.030 8 C -0.169 4.169 9 C -0.112 4.112 10 C -0.131 4.131 11 C -0.104 4.104 12 C -0.185 4.185 13 C 0.051 3.949 14 N -0.316 5.316 15 C 0.312 3.688 16 O -0.433 6.433 17 C -0.023 4.023 18 H 0.092 0.908 19 C -0.189 4.189 20 C -0.552 4.552 21 H 0.044 0.956 22 C -0.187 4.187 23 N -0.588 5.588 24 Si 0.765 3.235 25 H -0.192 1.192 26 H -0.145 1.145 27 H -0.209 1.209 28 C -0.223 4.223 29 C 0.066 3.934 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.166 0.834 42 H 0.126 0.874 43 H 0.257 0.743 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -31.313 18.661 8.740 37.485 hybrid contribution 1.025 -0.973 0.268 1.438 sum -30.289 17.689 9.008 36.214 Atomic orbital electron populations 1.23044 0.77915 1.04152 1.01930 1.87986 1.22420 1.26633 1.95832 1.22423 0.87185 0.87116 1.05894 1.21421 0.90981 0.83107 0.75483 1.90471 1.74016 1.28876 1.48895 1.45788 1.03275 1.08916 1.69147 1.22563 0.99400 0.78990 1.02084 1.21917 0.94681 1.02021 0.98306 1.20500 0.96065 0.90966 1.03631 1.19828 0.92754 0.96122 1.04400 1.21025 0.94204 0.96646 0.98475 1.21254 1.00157 0.92704 1.04427 1.17943 0.91795 0.85404 0.99786 1.43655 1.29108 1.17272 1.41568 1.21650 0.78567 0.90613 0.77991 1.90557 1.61046 1.53118 1.38549 1.19261 0.95286 0.88786 0.99001 0.90758 1.21908 0.97562 0.98773 1.00614 1.20859 1.03201 1.22116 1.09015 0.95612 1.26019 0.94184 0.97298 1.01167 1.70069 1.12579 1.37528 1.38670 0.85823 0.80984 0.77946 0.78709 1.19177 1.14548 1.20878 1.22200 0.92566 1.00574 1.06978 1.17444 0.83026 0.93296 0.99596 0.89167 0.91692 0.91983 0.86147 0.86623 0.85357 0.88267 0.92113 0.85681 0.88392 0.89379 0.83375 0.87399 0.74280 0.94542 0.92096 0.90956 0.92258 0.81629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.54 10.24 -129.94 -1.33 -8.87 16 3 C 0.05 0.61 4.78 71.24 0.34 0.95 16 4 C 0.50 11.06 7.70 87.66 0.67 11.73 16 5 O -0.54 -18.16 13.00 16.00 0.21 -17.95 16 6 N -0.55 -10.33 2.97 -629.39 -1.87 -12.19 16 7 C 0.09 0.59 6.26 86.44 0.54 1.13 16 8 C -0.13 -0.89 6.11 30.68 0.19 -0.70 16 9 C -0.07 -0.91 5.77 29.77 0.17 -0.74 16 10 C -0.13 -3.00 5.76 -19.71 -0.11 -3.12 16 11 C -0.08 -2.42 9.65 22.29 0.22 -2.20 16 12 C -0.16 -6.24 8.69 22.38 0.19 -6.05 16 13 C 0.15 5.58 6.28 38.12 0.24 5.82 16 14 N -0.67 -26.38 5.22 -303.61 -1.59 -27.96 16 15 C 0.52 25.43 6.99 87.66 0.61 26.05 16 16 O -0.56 -31.86 13.11 -3.05 -0.04 -31.90 16 17 C 0.00 -0.08 2.19 -12.29 -0.03 -0.11 16 18 H 0.07 3.33 5.84 -2.39 -0.01 3.31 16 19 C -0.13 -5.51 8.71 71.98 0.63 -4.89 16 20 C -0.51 -31.77 8.50 25.60 0.22 -31.55 16 21 H 0.03 1.86 7.36 -2.91 -0.02 1.84 16 22 C 0.01 0.62 5.47 84.66 0.46 1.08 16 23 N -0.95 -62.04 13.96 21.45 0.30 -61.74 16 24 Si 0.94 43.62 26.25 68.60 1.80 45.43 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.22 -8.90 6.23 99.48 0.62 -8.28 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 28 C -0.20 -6.89 8.89 22.53 0.20 -6.69 16 29 C 0.16 4.36 6.32 38.06 0.24 4.61 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.26 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.12 0.45 7.97 -2.39 -0.02 0.43 16 34 H 0.12 0.56 7.69 -2.39 -0.02 0.54 16 35 H 0.13 -0.14 6.10 -2.39 -0.01 -0.15 16 36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.11 4.77 6.27 -2.91 -0.02 4.75 16 43 H 0.42 13.61 8.48 -92.71 -0.79 12.82 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 2.54 6.89 -2.39 -0.02 2.52 16 46 H 0.07 2.42 7.83 -2.38 -0.02 2.40 16 47 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 48 H 0.17 6.08 4.71 -46.79 -0.22 5.86 16 Total: -1.00 -94.88 383.04 3.43 -91.44 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.08 Total: 26.98 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.03 Total: -3.23 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -3.16 Total: -101.89 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -1.16 Total: -58.72 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.80 Total: 45.43 kcal Total: -94.88 3.43 -91.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888032862.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.120 kcal (2) G-P(sol) polarization free energy of solvation -94.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds