Wall clock time and date at job start Wed Apr 1 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47218 * 2 1 4 4 O 1.42896 * 109.46904 * 240.00389 * 2 1 3 5 5 C 1.53001 * 109.47332 * 120.00240 * 2 1 3 6 6 C 1.52999 * 109.46889 * 184.99965 * 5 2 1 7 7 C 1.53002 * 109.46890 * 179.97438 * 6 5 2 8 8 N 1.46901 * 109.47218 * 180.02562 * 7 6 5 9 9 C 1.47012 * 110.99953 * 66.36695 * 8 7 6 10 10 C 1.53093 * 109.25709 * 182.39299 * 9 8 7 11 11 O 1.43019 * 109.26001 * 303.15109 * 10 9 8 12 12 C 1.43011 * 113.73512 * 58.67115 * 11 10 9 13 13 H 1.09000 * 109.54735 * 61.28611 * 12 11 10 14 14 C 1.53004 * 109.50325 * 181.39438 * 12 11 10 15 15 N 1.46499 * 109.47198 * 299.78298 * 14 12 11 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 S 1.81005 * 109.46906 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99828 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00390 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99869 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00444 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00089 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47406 * 89.99536 * 24 22 20 26 26 H 1.48502 * 109.46978 * 209.99777 * 24 22 20 27 27 H 1.48504 * 109.47081 * 329.99606 * 24 22 20 28 28 C 1.47012 * 110.99804 * 190.00438 * 8 7 6 29 29 H 1.09007 * 109.47455 * 59.99817 * 1 2 3 30 30 H 1.09005 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47419 * 299.99740 * 1 2 3 32 32 H 0.96701 * 114.00589 * 59.99814 * 4 2 1 33 33 H 1.08994 * 109.47256 * 64.99705 * 5 2 1 34 34 H 1.09001 * 109.46402 * 304.99781 * 5 2 1 35 35 H 1.09001 * 109.47265 * 60.00149 * 6 5 2 36 36 H 1.08996 * 109.47343 * 300.00096 * 6 5 2 37 37 H 1.09001 * 109.46723 * 60.00212 * 7 6 5 38 38 H 1.08996 * 109.47528 * 300.00377 * 7 6 5 39 39 H 1.09001 * 109.50993 * 302.32755 * 9 8 7 40 40 H 1.09000 * 109.50437 * 62.41361 * 9 8 7 41 41 H 1.09004 * 109.50813 * 63.08821 * 10 9 8 42 42 H 1.09004 * 109.50507 * 183.17323 * 10 9 8 43 43 H 1.09009 * 109.46730 * 179.78086 * 14 12 11 44 44 H 1.08998 * 109.46846 * 59.78630 * 14 12 11 45 45 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 46 46 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 47 47 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 48 48 H 0.96995 * 120.00766 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.51042 * 57.67420 * 28 8 7 50 50 H 1.08997 * 109.53963 * 297.55839 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6133 1.3135 7 6 4.0748 -1.3340 2.5631 8 7 5.5388 -1.2299 2.6253 9 6 5.9594 0.1629 2.8368 10 6 7.4886 0.2343 2.8355 11 8 8.0029 -0.6450 3.8394 12 6 7.6132 -2.0098 3.6637 13 1 7.9945 -2.3782 2.7113 14 6 8.1845 -2.8550 4.8040 15 7 9.6466 -2.7643 4.7940 16 6 10.3698 -3.4365 5.7114 17 8 9.8098 -4.1124 6.5484 18 6 11.8741 -3.3481 5.6972 19 16 12.5501 -4.3527 7.0426 20 6 14.2725 -4.0747 6.7962 21 1 14.6069 -3.4368 5.9916 22 6 15.1996 -4.6757 7.6364 23 7 16.4864 -4.4685 7.4521 24 14 14.6213 -5.7798 9.0278 25 1 14.5250 -7.1796 8.5417 26 1 15.5915 -5.7112 10.1500 27 1 13.2877 -5.3262 9.4981 28 6 6.0851 -2.1040 3.6735 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7209 -0.2700 -1.9980 33 1 1.7517 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.8532 0.4370 1.3572 36 1 3.9994 -1.0727 0.4258 37 1 3.7865 -2.3843 2.5198 38 1 3.6402 -0.8743 3.4506 39 1 5.5651 0.7879 2.0356 40 1 5.5787 0.5164 3.7950 41 1 7.8663 -0.0681 1.8587 42 1 7.8055 1.2553 3.0481 43 1 7.8839 -3.8944 4.6716 44 1 7.8040 -2.4852 5.7561 45 1 10.0944 -2.2240 4.1243 46 1 12.2508 -3.7171 4.7432 47 1 12.1785 -2.3102 5.8310 48 1 17.1343 -4.8887 8.0390 49 1 5.7827 -3.1337 3.4829 50 1 5.7072 -1.7876 4.6456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753645495.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:03 Heat of formation + Delta-G solvation = -143.017063 kcal Electronic energy + Delta-G solvation = -27342.837203 eV Core-core repulsion = 23302.825506 eV Total energy + Delta-G solvation = -4040.011697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.26896 -39.05264 -38.40698 -36.66317 -34.73061 -33.77923 -32.40439 -31.98234 -31.04479 -29.61453 -28.31101 -26.32117 -25.55579 -24.66675 -23.33470 -21.69144 -21.28195 -20.90843 -20.20769 -18.03187 -17.88224 -16.94350 -16.81835 -16.31980 -16.16728 -15.83616 -15.43619 -15.17733 -15.00292 -14.93983 -14.88380 -14.55800 -14.40981 -13.95594 -13.71477 -13.34828 -13.17927 -13.12608 -12.87083 -12.77352 -12.63513 -12.43277 -12.24525 -12.04181 -11.84904 -11.66377 -11.51495 -11.23005 -11.19622 -11.05974 -10.97613 -10.76736 -10.55315 -10.51946 -9.99440 -9.81860 -9.46878 -8.98064 -8.91123 -8.82802 -8.45589 -6.87327 -6.25349 -3.96638 2.78913 3.03917 3.16919 3.35789 3.38243 3.44409 3.53885 3.70689 3.73784 4.16398 4.36650 4.39400 4.46445 4.48376 4.53808 4.55293 4.65807 4.73861 4.80503 4.85266 4.88486 4.96612 5.03688 5.05402 5.13763 5.16211 5.19890 5.23473 5.30116 5.32968 5.33436 5.41853 5.44153 5.47355 5.55085 5.63879 5.75716 5.79966 5.84475 5.91622 6.08462 6.48359 6.50680 6.57897 6.84233 7.12191 7.69332 7.97798 8.45658 8.55521 9.20990 10.83950 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.038843 B = 0.001430 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.682878 B =19569.274210 C =19894.896464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.101 3.899 3 H 0.054 0.946 4 O -0.565 6.565 5 C -0.113 4.113 6 C -0.112 4.112 7 C 0.055 3.945 8 N -0.536 5.536 9 C 0.014 3.986 10 C 0.064 3.936 11 O -0.375 6.375 12 C 0.084 3.916 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.730 5.730 16 C 0.531 3.469 17 O -0.523 6.523 18 C -0.123 4.123 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.027 3.973 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.376 0.624 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.403 0.597 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.270 0.730 49 H 0.090 0.910 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.358 12.808 -17.345 38.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.042 3.958 3 H 0.072 0.928 4 O -0.371 6.371 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.073 4.073 8 N -0.260 5.260 9 C -0.114 4.114 10 C -0.013 4.013 11 O -0.294 6.294 12 C 0.025 3.975 13 H 0.094 0.906 14 C 0.007 3.993 15 N -0.384 5.384 16 C 0.317 3.683 17 O -0.398 6.398 18 C -0.274 4.274 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 C -0.102 4.102 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.223 0.777 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.238 0.762 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -32.530 11.164 -15.718 37.814 hybrid contribution 0.002 1.240 -0.578 1.368 sum -32.528 12.404 -16.296 38.438 Atomic orbital electron populations 1.22534 0.96592 1.02933 1.02469 1.21792 0.92518 0.95235 0.86249 0.92848 1.86559 1.77012 1.57618 1.15904 1.21591 0.96054 1.01710 0.95744 1.21538 0.94460 1.00469 0.98554 1.22167 0.86428 1.01344 0.97329 1.62177 1.10413 1.07245 1.46196 1.22863 0.97223 0.90167 1.01113 1.22664 0.91736 0.94649 0.92279 1.88068 1.73463 1.17267 1.50590 1.22395 0.93070 0.83018 0.99004 0.90626 1.21242 0.81038 0.98990 0.98021 1.45788 1.06110 1.51745 1.34760 1.20267 0.89197 0.78510 0.80303 1.90694 1.72547 1.39715 1.36835 1.23268 0.93220 1.05626 1.05250 1.84765 1.05648 1.63120 1.38103 1.22331 0.88362 1.35810 1.20342 0.89379 1.24704 0.94046 0.95497 0.97008 1.69937 1.00377 1.43015 1.38469 0.86737 0.80997 0.81873 0.82260 1.19222 1.19970 1.15916 1.22683 0.95066 0.98672 0.93793 0.92372 0.91711 0.91574 0.77672 0.90973 0.90798 0.92208 0.90132 0.90467 0.94765 0.89417 0.93893 0.92113 0.88261 0.89979 0.90912 0.76231 0.88486 0.88394 0.91977 0.89147 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.65 9.53 37.16 0.35 -0.30 16 2 C 0.10 0.46 3.58 -26.73 -0.10 0.36 16 3 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 4 O -0.57 -3.28 12.85 -35.23 -0.45 -3.74 16 5 C -0.11 -0.56 4.92 -26.73 -0.13 -0.69 16 6 C -0.11 -0.67 5.05 -26.73 -0.13 -0.80 16 7 C 0.05 0.36 4.96 -3.82 -0.02 0.34 16 8 N -0.54 -4.17 4.73 -234.31 -1.11 -5.27 16 9 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 10 C 0.06 0.49 7.01 37.21 0.26 0.75 16 11 O -0.38 -3.91 10.23 -35.23 -0.36 -4.27 16 12 C 0.08 0.79 2.89 -26.68 -0.08 0.71 16 13 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 14 C 0.13 1.54 5.37 -4.04 -0.02 1.52 16 15 N -0.73 -9.99 5.45 -60.29 -0.33 -10.32 16 16 C 0.53 9.79 7.85 -10.99 -0.09 9.71 16 17 O -0.52 -11.55 15.86 5.55 0.09 -11.47 16 18 C -0.12 -2.46 6.16 36.00 0.22 -2.23 16 19 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16 20 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 21 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 22 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 23 N -0.88 -26.88 13.97 55.49 0.78 -26.10 16 24 Si 0.86 22.05 27.74 -169.99 -4.72 17.34 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 28 C 0.03 0.22 4.93 -3.71 -0.02 0.20 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.38 0.74 9.08 45.56 0.41 1.16 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.34 6.51 -51.93 -0.34 0.00 16 36 H 0.08 0.63 7.82 -51.93 -0.41 0.22 16 37 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 38 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 39 H 0.09 0.51 6.38 -51.93 -0.33 0.18 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.40 4.65 8.36 -40.82 -0.34 4.31 16 46 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 47 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 48 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 49 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 50 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 414.41 15.07 6.25 6.25 Total: -1.00 -35.88 414.41 -9.58 -45.46 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.18 Total: 0.33 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 0.45 Total: -2.53 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.66 Total: -41.69 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.73 Total: -19.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.88 -9.58 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753645495.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.557 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds