Wall clock time and date at job start Wed Apr 1 2020 04:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46770 * 2 1 4 4 C 1.46504 * 119.99887 * 274.99732 * 3 2 1 5 5 C 1.50693 * 109.47366 * 275.91161 * 4 3 2 6 6 H 1.08004 * 120.00404 * 5.09441 * 5 4 3 7 7 C 1.37876 * 120.00230 * 185.10053 * 5 4 3 8 8 N 1.31519 * 120.00387 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99636 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47411 * 90.00507 * 9 7 5 11 11 H 1.48507 * 109.46981 * 210.00314 * 9 7 5 12 12 H 1.48498 * 109.47392 * 329.99833 * 9 7 5 13 13 S 1.65596 * 120.00003 * 95.00600 * 3 2 1 14 14 O 1.42100 * 106.40076 * 342.28750 * 13 3 2 15 15 O 1.42103 * 106.40207 * 209.36721 * 13 3 2 16 16 N 1.65600 * 107.21864 * 95.83088 * 13 3 2 17 17 C 1.46506 * 119.99536 * 295.70397 * 16 13 3 18 18 H 1.08998 * 109.55099 * 24.47797 * 17 16 13 19 19 C 1.53178 * 109.55119 * 264.28294 * 17 16 13 20 20 C 1.53095 * 109.18463 * 182.79012 * 19 17 16 21 21 O 1.42956 * 109.39493 * 57.99298 * 20 19 17 22 22 C 1.42524 * 114.20342 * 299.54219 * 21 20 19 23 23 C 1.53598 * 110.07101 * 298.39758 * 22 21 20 24 24 C 1.54349 * 106.50011 * 240.75882 * 23 22 21 25 25 C 1.54914 * 104.20105 * 23.56959 * 24 23 22 26 26 C 1.54010 * 109.79325 * 181.02121 * 22 21 20 27 27 C 1.52764 * 110.38021 * 59.96391 * 22 21 20 28 28 H 1.09007 * 109.46708 * 300.00183 * 1 2 3 29 29 H 1.08998 * 109.47747 * 59.99665 * 1 2 3 30 30 H 1.09003 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46716 * 240.00285 * 2 1 3 32 32 H 1.08996 * 109.47246 * 119.99768 * 2 1 3 33 33 H 1.09002 * 109.46763 * 35.91051 * 4 3 2 34 34 H 1.09001 * 109.47093 * 155.90977 * 4 3 2 35 35 H 0.96999 * 120.00109 * 179.97438 * 8 7 5 36 36 H 0.96995 * 120.00579 * 115.71391 * 16 13 3 37 37 H 1.09006 * 109.52054 * 302.70041 * 19 17 16 38 38 H 1.08997 * 109.52040 * 62.87105 * 19 17 16 39 39 H 1.09009 * 109.48246 * 177.96859 * 20 19 17 40 40 H 1.08996 * 109.48165 * 298.01283 * 20 19 17 41 41 H 1.09003 * 110.04911 * 0.02562 * 23 22 21 42 42 H 1.09000 * 110.05443 * 121.49829 * 23 22 21 43 43 H 1.08994 * 110.48517 * 264.88936 * 24 23 22 44 44 H 1.08999 * 110.59878 * 142.30362 * 24 23 22 45 45 H 1.08993 * 110.75331 * 203.88001 * 25 24 23 46 46 H 1.08998 * 110.75074 * 80.52164 * 25 24 23 47 47 H 1.08999 * 110.50109 * 214.56523 * 26 22 21 48 48 H 1.09005 * 110.49642 * 337.24162 * 26 22 21 49 49 H 1.09005 * 109.51320 * 183.57587 * 27 22 21 50 50 H 1.08992 * 109.51465 * 63.42537 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4852 1.7716 -1.8934 6 1 4.1213 1.0231 -1.4444 7 6 3.8876 2.4189 -3.0423 8 7 5.0456 2.1244 -3.5920 9 14 2.7873 3.7132 -3.8192 10 1 3.1136 5.0460 -3.2513 11 1 3.0076 3.7335 -5.2877 12 1 1.3659 3.3891 -3.5364 13 16 2.4122 2.1202 1.4286 14 8 1.7967 1.3578 2.4578 15 8 2.1738 3.5085 1.2414 16 7 4.0466 1.9501 1.6342 17 6 4.6283 0.6164 1.8056 18 1 3.9717 -0.1285 1.3560 19 6 4.7953 0.3181 3.2987 20 6 5.4673 -1.0472 3.4669 21 8 6.7289 -1.0413 2.7945 22 6 6.6430 -0.7958 1.3932 23 6 5.8217 -1.9016 0.7136 24 6 6.7601 -2.5806 -0.3065 25 6 8.1829 -2.2834 0.2295 26 6 8.0505 -0.8370 0.7693 27 6 6.0027 0.5660 1.1300 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3523 1.8217 -1.9395 34 1 2.1082 3.1808 -1.0736 35 1 5.3284 2.5795 -4.4005 36 1 4.6187 2.7333 1.6413 37 1 5.4158 1.0883 3.7569 38 1 3.8169 0.3041 3.7790 39 1 5.6213 -1.2485 4.5271 40 1 4.8305 -1.8211 3.0384 41 1 5.4871 -2.6276 1.4547 42 1 4.9632 -1.4680 0.2007 43 1 6.6267 -2.1447 -1.2965 44 1 6.5806 -3.6553 -0.3365 45 1 8.9163 -2.3296 -0.5754 46 1 8.4449 -2.9727 1.0322 47 1 8.1282 -0.1170 -0.0453 48 1 8.8096 -0.6413 1.5267 49 1 5.8860 0.7119 0.0560 50 1 6.6380 1.3520 1.5380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336903607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:26 Heat of formation + Delta-G solvation = -139.512027 kcal Electronic energy + Delta-G solvation = -31816.568395 eV Core-core repulsion = 27776.708687 eV Total energy + Delta-G solvation = -4039.859708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.32039 -36.84874 -36.28615 -36.21103 -35.32502 -35.23192 -32.68916 -30.74139 -30.45288 -30.26247 -28.65697 -27.19283 -25.41425 -23.67523 -22.98890 -21.63747 -21.57925 -20.54869 -19.11358 -18.57059 -17.34988 -16.96284 -16.78476 -16.43996 -16.29480 -15.60992 -15.06028 -14.77261 -14.64885 -14.22794 -14.04267 -13.95584 -13.53531 -13.33270 -13.21911 -12.95420 -12.76125 -12.57086 -12.07203 -11.96576 -11.73928 -11.67896 -11.56585 -11.50367 -11.41935 -11.30132 -11.16000 -11.07968 -11.05204 -11.00676 -10.95386 -10.79886 -10.55403 -10.42463 -10.40832 -10.22953 -9.93501 -9.63072 -9.32994 -9.12464 -8.68409 -8.17435 -6.20628 -4.20451 1.20353 3.22832 3.29738 3.34273 3.39628 3.84861 4.05395 4.31606 4.58267 4.68664 4.83462 4.89308 4.96142 5.03564 5.10220 5.13983 5.26217 5.28958 5.38035 5.42238 5.51178 5.62338 5.64241 5.68381 5.72854 5.76427 5.81925 5.89016 5.94308 5.97384 6.00838 6.05369 6.16229 6.17770 6.19032 6.24647 6.37615 6.43075 6.46230 6.47730 6.52788 6.54040 6.81151 7.04553 7.25709 7.43164 7.44668 7.53065 8.36670 8.82801 9.40919 10.91217 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.005390 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.985777 B = 5193.998759 C = 6732.110698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.987 5.987 4 C 0.216 3.784 5 C -0.539 4.539 6 H 0.082 0.918 7 C 0.077 3.923 8 N -0.891 5.891 9 Si 0.866 3.134 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.786 3.214 14 O -0.996 6.996 15 O -0.986 6.986 16 N -1.115 6.115 17 C 0.165 3.835 18 H 0.081 0.919 19 C -0.175 4.175 20 C 0.062 3.938 21 O -0.373 6.373 22 C 0.120 3.880 23 C -0.153 4.153 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.110 4.110 27 C -0.146 4.146 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.099 0.901 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 -8.472 9.622 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.828 5.828 4 C 0.093 3.907 5 C -0.578 4.578 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.693 3.307 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.794 3.206 14 O -0.979 6.979 15 O -0.971 6.971 16 N -0.872 5.872 17 C 0.057 3.943 18 H 0.099 0.901 19 C -0.215 4.215 20 C -0.015 4.015 21 O -0.292 6.292 22 C 0.080 3.920 23 C -0.190 4.190 24 C -0.159 4.159 25 C -0.159 4.159 26 C -0.148 4.148 27 C -0.185 4.185 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.247 0.753 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.118 0.882 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.525 -8.156 10.136 13.099 hybrid contribution -0.270 1.002 -1.010 1.448 sum 1.255 -7.154 9.126 11.664 Atomic orbital electron populations 1.22204 0.96833 1.01618 1.02246 1.21074 0.93755 0.82693 1.02513 1.57515 1.78866 1.22957 1.23413 1.19550 0.98287 0.91925 0.80984 1.21422 1.02345 1.23889 1.10117 0.89962 1.24831 0.94781 0.96417 0.96579 1.69875 1.20019 1.42266 1.20730 0.86994 0.81911 0.82942 0.78831 1.19800 1.21068 1.18899 1.01695 0.72894 0.72956 0.73011 1.93545 1.75312 1.73009 1.56038 1.93573 1.84360 1.32594 1.86526 1.55928 1.28207 1.13483 1.89614 1.20605 0.95696 0.83581 0.94401 0.90083 1.22794 1.02512 0.98633 0.97543 1.22536 0.85750 0.95821 0.97411 1.87884 1.29083 1.92154 1.20104 1.21890 0.95916 0.93201 0.80982 1.22845 0.99332 0.97974 0.98874 1.22318 0.94470 0.99964 0.99173 1.22484 0.97086 0.96346 1.00033 1.22355 0.94708 0.97762 0.99943 1.22538 0.95156 0.97248 1.03597 0.92730 0.92178 0.92069 0.89879 0.91524 0.94679 0.94207 0.92536 0.75297 0.90681 0.89738 0.88922 0.92887 0.91151 0.90442 0.90840 0.91926 0.91539 0.91604 0.89710 0.90759 0.88225 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.13 2.04 5.84 -4.04 -0.02 2.02 16 3 N -0.99 -18.98 2.83 -115.66 -0.33 -19.31 16 4 C 0.22 4.85 4.51 -5.19 -0.02 4.82 16 5 C -0.54 -13.51 9.93 -34.44 -0.34 -13.85 16 6 H 0.08 2.14 7.82 -52.48 -0.41 1.73 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -24.88 13.96 55.43 0.77 -24.11 16 9 Si 0.87 20.39 27.37 -169.99 -4.65 15.74 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.26 -5.98 6.69 56.52 0.38 -5.60 16 13 S 2.79 52.99 6.01 -107.50 -0.65 52.34 16 14 O -1.00 -19.13 16.33 -57.17 -0.93 -20.06 16 15 O -0.99 -21.90 16.82 -57.17 -0.96 -22.86 16 16 N -1.12 -18.28 5.54 -4.71 -0.03 -18.30 16 17 C 0.16 2.44 2.54 -67.71 -0.17 2.27 16 18 H 0.08 1.21 5.65 -51.93 -0.29 0.92 16 19 C -0.18 -2.28 5.74 -26.59 -0.15 -2.44 16 20 C 0.06 0.73 6.53 37.21 0.24 0.97 16 21 O -0.37 -4.98 10.16 -35.23 -0.36 -5.34 16 22 C 0.12 1.60 0.96 -89.90 -0.09 1.52 16 23 C -0.15 -1.96 5.20 -25.71 -0.13 -2.10 16 24 C -0.12 -1.47 6.84 -25.01 -0.17 -1.65 16 25 C -0.12 -1.38 6.91 -24.69 -0.17 -1.56 16 26 C -0.11 -1.38 6.08 -25.17 -0.15 -1.54 16 27 C -0.15 -2.15 4.10 -26.73 -0.11 -2.26 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 32 H 0.07 0.98 6.63 -51.93 -0.34 0.63 16 33 H 0.04 0.78 7.52 -51.93 -0.39 0.38 16 34 H 0.04 0.95 6.13 -51.93 -0.32 0.63 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.41 6.34 8.84 -34.47 -0.30 6.03 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.14 7.78 -51.93 -0.40 0.73 16 39 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.05 0.59 6.48 -51.93 -0.34 0.25 16 41 H 0.07 0.84 6.53 -51.93 -0.34 0.50 16 42 H 0.08 1.08 6.65 -51.93 -0.35 0.74 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 1.11 7.83 -51.93 -0.41 0.71 16 48 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 49 H 0.10 1.73 7.91 -51.93 -0.41 1.32 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -30.23 392.46 -10.76 -40.99 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.53 Total: 8.93 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.01 Total: -13.92 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.42 Total: -61.72 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -2.25 Total: -48.27 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.65 Total: 15.74 kcal Atomic # 16 Polarization: 52.99 SS G_CDS: -0.65 Total: 52.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.23 -10.76 -40.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336903607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.524 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds