Wall clock time and date at job start Wed Apr 1 2020 04:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28513 * 124.44171 * 2 1 4 4 C 1.31134 * 109.06008 * 180.02562 * 3 2 1 5 5 C 1.40927 * 105.77339 * 0.02562 * 4 3 2 6 6 C 1.47799 * 127.23626 * 179.97438 * 5 4 3 7 7 O 1.21568 * 119.99929 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00420 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00503 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47399 * 180.02562 * 9 8 6 11 11 C 1.35344 * 126.75640 * 94.99848 * 10 9 8 12 12 N 1.35308 * 106.17843 * 179.97438 * 11 10 9 13 13 C 1.46509 * 125.86964 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.64098 * 203.30899 * 13 12 11 15 15 C 1.55160 * 110.71923 * 79.97059 * 13 12 11 16 16 C 1.55135 * 101.48110 * 205.97270 * 15 13 12 17 17 N 1.47416 * 104.72564 * 37.29431 * 16 15 13 18 18 C 1.36939 * 125.64950 * 155.81761 * 17 16 15 19 19 H 1.07995 * 120.00142 * 194.57186 * 18 17 16 20 20 C 1.38815 * 119.99679 * 14.56490 * 18 17 16 21 21 N 1.31618 * 119.99688 * 203.65649 * 20 18 17 22 22 Si 1.86796 * 119.99898 * 23.66378 * 20 18 17 23 23 H 1.48501 * 109.46721 * 269.99503 * 22 20 18 24 24 H 1.48499 * 109.47520 * 29.99495 * 22 20 18 25 25 H 1.48500 * 109.46964 * 149.99796 * 22 20 18 26 26 C 1.47021 * 108.70650 * 335.55764 * 17 16 15 27 27 N 1.28712 * 108.26272 * 0.26042 * 12 11 10 28 28 N 1.28633 * 110.17931 * 359.56273 * 27 12 11 29 29 N 1.28585 * 124.44308 * 180.34014 * 2 1 3 30 30 H 1.09002 * 109.47132 * 89.97846 * 1 2 3 31 31 H 1.09001 * 109.47080 * 209.97148 * 1 2 3 32 32 H 1.08994 * 109.47154 * 329.97490 * 1 2 3 33 33 H 1.08001 * 127.11279 * 179.97438 * 4 3 2 34 34 H 0.97009 * 119.99720 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.46955 * 59.99736 * 9 8 6 36 36 H 1.09004 * 109.47025 * 300.00280 * 9 8 6 37 37 H 1.08009 * 126.90916 * 359.97438 * 11 10 9 38 38 H 1.08998 * 111.00356 * 324.20660 * 15 13 12 39 39 H 1.08995 * 111.00449 * 88.02740 * 15 13 12 40 40 H 1.09003 * 110.49218 * 278.45466 * 16 15 13 41 41 H 1.08998 * 110.33998 * 156.06342 * 16 15 13 42 42 H 0.96998 * 120.00089 * 354.69529 * 21 20 18 43 43 H 1.08991 * 109.88882 * 120.69924 * 26 17 16 44 44 H 1.08999 * 109.88521 * 241.87209 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4563 0.7120 -0.0006 5 6 3.4659 -0.6972 -0.0015 6 6 4.6487 -1.5835 -0.0029 7 8 5.7664 -1.1054 -0.0039 8 7 4.4882 -2.9216 -0.0032 9 6 5.6605 -3.8001 -0.0052 10 6 5.2106 -5.2383 -0.0058 11 6 5.0577 -6.0387 -1.0864 12 7 4.6410 -7.2359 -0.6130 13 6 4.3436 -8.4218 -1.4201 14 1 3.6633 -9.0874 -0.8889 15 6 5.6502 -9.1626 -1.8095 16 6 5.2209 -9.8796 -3.1165 17 7 4.3312 -8.9201 -3.7954 18 6 4.0788 -8.8798 -5.1407 19 1 3.6079 -8.0108 -5.5760 20 6 4.4285 -9.9558 -5.9450 21 7 4.6314 -9.7761 -7.2329 22 14 4.6107 -11.6588 -5.1993 23 1 6.0132 -11.8561 -4.7529 24 1 3.6977 -11.7900 -4.0355 25 1 4.2663 -12.6841 -6.2168 26 6 3.7547 -8.0175 -2.7881 27 7 4.5461 -7.1522 0.6679 28 7 4.8843 -5.9753 1.0620 29 7 2.1923 -1.0604 -0.0063 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 4.3130 1.3696 -0.0011 34 1 3.5962 -3.3031 -0.0029 35 1 6.2606 -3.6071 0.8840 36 1 6.2582 -3.6064 -0.8960 37 1 5.2330 -5.7749 -2.1190 38 1 6.4593 -8.4563 -1.9951 39 1 5.9328 -9.8849 -1.0437 40 1 4.6828 -10.7996 -2.8880 41 1 6.0923 -10.0926 -3.7356 42 1 4.4623 -8.9094 -7.6343 43 1 4.0234 -6.9864 -3.0172 44 1 2.6702 -8.1252 -2.7711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000028717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:41 Heat of formation + Delta-G solvation = 186.745584 kcal Electronic energy + Delta-G solvation = -29112.294255 eV Core-core repulsion = 24912.183347 eV Total energy + Delta-G solvation = -4200.110909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.73758 -44.45512 -40.61059 -39.70552 -36.52085 -35.53452 -34.83018 -34.08180 -33.79669 -32.47410 -31.39130 -29.81850 -29.30435 -27.86099 -26.24389 -24.91653 -24.08086 -23.15533 -22.91742 -22.41164 -21.61872 -21.46231 -19.68613 -19.26901 -18.35977 -18.06735 -17.97235 -17.46455 -17.06617 -16.75818 -16.38656 -16.13750 -15.83006 -15.71096 -15.51969 -15.39673 -15.12337 -14.47709 -14.31216 -14.02208 -13.75020 -13.68248 -13.66368 -13.30295 -13.14013 -13.05877 -12.89472 -12.72944 -12.48726 -12.16472 -12.07830 -11.87069 -11.59703 -11.58987 -11.53108 -11.34939 -11.06437 -10.68356 -10.56439 -10.40556 -10.21378 -9.22728 -8.64255 -5.51520 0.15341 0.46414 0.85113 1.07746 1.17338 1.29509 1.42945 1.55883 1.70911 2.10192 2.19115 2.52929 2.85404 3.00325 3.05559 3.25334 3.34000 3.41390 3.66250 3.72461 3.81396 3.93446 3.97535 4.15496 4.21534 4.26261 4.28305 4.40826 4.46872 4.53582 4.62679 4.64764 4.68773 4.76527 4.79004 4.86129 4.91094 4.96000 5.03895 5.16206 5.48745 5.50191 5.56475 6.06848 6.26620 6.76675 6.90515 7.04171 7.36087 7.39257 8.02467 8.83298 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.002183 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.614242 B =12823.686713 C =13721.434593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.136 5.136 3 N -0.300 5.300 4 C 0.032 3.968 5 C -0.067 4.067 6 C 0.616 3.384 7 O -0.553 6.553 8 N -0.702 5.702 9 C 0.217 3.783 10 C -0.048 4.048 11 C -0.012 4.012 12 N -0.271 5.271 13 C 0.137 3.863 14 H 0.143 0.857 15 C -0.121 4.121 16 C 0.096 3.904 17 N -0.622 5.622 18 C -0.319 4.319 19 H 0.045 0.955 20 C -0.072 4.072 21 N -0.954 5.954 22 Si 1.100 2.900 23 H -0.267 1.267 24 H -0.258 1.258 25 H -0.310 1.310 26 C 0.128 3.872 27 N -0.098 5.098 28 N -0.277 5.277 29 N -0.257 5.257 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.226 0.774 34 H 0.412 0.588 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.206 0.794 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.249 0.751 43 H 0.047 0.953 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 15.623 17.833 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.040 5.040 3 N -0.140 5.140 4 C -0.150 4.150 5 C -0.229 4.229 6 C 0.400 3.600 7 O -0.429 6.429 8 N -0.354 5.354 9 C 0.092 3.908 10 C -0.186 4.186 11 C -0.165 4.165 12 N -0.063 5.063 13 C 0.035 3.965 14 H 0.161 0.839 15 C -0.160 4.160 16 C -0.028 4.028 17 N -0.351 5.351 18 C -0.447 4.447 19 H 0.063 0.937 20 C -0.267 4.267 21 N -0.597 5.597 22 Si 0.926 3.074 23 H -0.193 1.193 24 H -0.183 1.183 25 H -0.238 1.238 26 C 0.001 3.999 27 N -0.077 5.077 28 N -0.143 5.143 29 N -0.107 5.107 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.243 0.757 34 H 0.248 0.752 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.223 0.777 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.094 13.639 18.734 23.962 hybrid contribution 0.015 1.978 -1.461 2.460 sum -6.079 15.618 17.273 24.067 Atomic orbital electron populations 1.22785 0.66961 1.08095 1.07125 1.48608 1.10672 0.98543 1.46193 1.74039 1.03989 1.15863 1.20138 1.25214 0.94967 0.93454 1.01415 1.22940 0.91250 0.95260 1.13410 1.16621 0.85982 0.81433 0.76008 1.90816 1.24661 1.75765 1.51661 1.45795 1.11015 1.04851 1.73696 1.19421 0.86827 0.79694 1.04844 1.21849 1.09298 0.98464 0.89038 1.23748 1.04330 0.85636 1.02805 1.47468 1.41398 1.11285 1.06109 1.22829 1.00081 0.83062 0.90495 0.83947 1.23164 0.95136 1.00197 0.97521 1.22292 0.94116 0.93596 0.92809 1.44713 1.51050 1.36953 1.02368 1.19855 1.41256 1.01393 0.82190 0.93675 1.27170 0.98531 1.05976 0.94980 1.71029 1.48297 1.26918 1.13491 0.83419 0.78120 0.71677 0.74203 1.19314 1.18323 1.23815 1.21676 0.96932 0.95160 0.86094 1.78301 1.20526 1.15576 0.93282 1.75040 1.14576 0.97941 1.26786 1.74352 1.03054 1.16583 1.16707 0.87137 0.86065 0.85478 0.75716 0.75242 0.89142 0.87780 0.77720 0.90025 0.86701 0.93119 0.92550 0.94106 0.93556 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.55 127.77 1.48 1.95 16 2 N -0.14 -2.20 4.35 -206.53 -0.90 -3.09 16 3 N -0.30 -5.52 12.01 -56.16 -0.67 -6.20 16 4 C 0.03 0.61 12.04 85.46 1.03 1.64 16 5 C -0.07 -1.44 7.21 42.24 0.30 -1.14 16 6 C 0.62 14.30 7.83 86.77 0.68 14.97 16 7 O -0.55 -15.34 16.95 -3.93 -0.07 -15.40 16 8 N -0.70 -14.52 5.55 -469.76 -2.60 -17.12 16 9 C 0.22 4.37 6.23 85.63 0.53 4.90 16 10 C -0.05 -1.12 6.61 41.59 0.28 -0.84 16 11 C -0.01 -0.29 10.44 83.49 0.87 0.58 16 12 N -0.27 -6.90 3.36 -321.51 -1.08 -7.98 16 13 C 0.14 3.50 3.98 46.18 0.18 3.68 16 14 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 15 C -0.12 -3.10 6.78 32.07 0.22 -2.88 16 16 C 0.10 3.38 4.71 86.94 0.41 3.79 16 17 N -0.62 -26.21 3.25 -691.56 -2.25 -28.46 16 18 C -0.32 -16.92 10.44 84.03 0.88 -16.04 16 19 H 0.05 2.62 8.06 -2.91 -0.02 2.60 16 20 C -0.07 -4.00 5.43 84.86 0.46 -3.54 16 21 N -0.95 -58.35 13.70 21.65 0.30 -58.05 16 22 Si 1.10 48.81 24.69 68.60 1.69 50.50 16 23 H -0.27 -10.73 6.66 99.48 0.66 -10.07 16 24 H -0.26 -10.17 6.22 99.48 0.62 -9.55 16 25 H -0.31 -14.37 7.11 99.48 0.71 -13.66 16 26 C 0.13 4.16 6.86 86.73 0.59 4.75 16 27 N -0.10 -2.79 13.16 37.02 0.49 -2.30 16 28 N -0.28 -7.78 12.41 -48.60 -0.60 -8.39 16 29 N -0.26 -5.11 11.84 -48.17 -0.57 -5.68 16 30 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.23 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.41 8.19 8.23 -92.70 -0.76 7.43 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.21 4.20 7.05 -2.91 -0.02 4.18 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.05 1.71 5.50 -2.39 -0.01 1.70 16 41 H 0.06 2.16 6.38 -2.39 -0.02 2.15 16 42 H 0.25 15.37 8.73 -92.71 -0.81 14.56 16 43 H 0.05 1.48 6.01 -2.39 -0.01 1.46 16 44 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -74.78 372.66 1.78 -73.01 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.13 Total: 17.34 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 7.91 Total: 11.83 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -7.89 Total: -137.28 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.07 Total: -15.40 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 1.69 Total: 50.50 kcal Total: -74.78 1.78 -73.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000028717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.751 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds