Wall clock time and date at job start Wed Apr 1 2020 03:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47177 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47144 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47237 * 179.97438 * 6 5 4 8 8 C 1.46855 * 110.99573 * 45.78919 * 7 6 5 9 9 C 1.53040 * 109.51943 * 185.83954 * 8 7 6 10 10 C 1.53119 * 109.27620 * 300.82082 * 9 8 7 11 11 H 1.09003 * 109.52162 * 177.56390 * 10 9 8 12 12 N 1.46501 * 109.57367 * 297.71474 * 10 9 8 13 13 C 1.34771 * 120.00725 * 274.71487 * 12 10 9 14 14 O 1.21284 * 119.99598 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00465 * 180.02562 * 13 12 10 16 16 S 1.80995 * 109.46995 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00123 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99863 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00647 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00572 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99801 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47026 * 89.99674 * 21 19 17 23 23 H 1.48501 * 109.47117 * 210.00355 * 21 19 17 24 24 H 1.48501 * 109.46671 * 330.00030 * 21 19 17 25 25 C 1.53119 * 109.16181 * 57.65664 * 10 9 8 26 26 H 1.08993 * 109.53389 * 62.30543 * 25 10 9 27 27 O 1.42898 * 109.50253 * 182.40260 * 25 10 9 28 28 C 1.46848 * 110.99886 * 169.99612 * 7 6 5 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 32 32 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 33 33 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 34 34 H 1.09002 * 109.47367 * 300.00715 * 4 3 2 35 35 H 1.09000 * 109.46841 * 59.99911 * 4 3 2 36 36 H 1.09006 * 109.46632 * 299.99994 * 5 4 3 37 37 H 1.08995 * 109.47176 * 60.00128 * 5 4 3 38 38 H 1.09002 * 109.47121 * 300.00152 * 6 5 4 39 39 H 1.09000 * 109.47120 * 59.99368 * 6 5 4 40 40 H 1.09000 * 109.45962 * 305.85370 * 8 7 6 41 41 H 1.08997 * 109.46125 * 65.82440 * 8 7 6 42 42 H 1.09000 * 109.49995 * 180.88015 * 9 8 7 43 43 H 1.08993 * 109.53429 * 60.78092 * 9 8 7 44 44 H 0.97001 * 119.99712 * 94.72053 * 12 10 9 45 45 H 1.09000 * 109.46609 * 300.00119 * 15 13 12 46 46 H 1.08994 * 109.46820 * 60.00427 * 15 13 12 47 47 H 0.96995 * 120.00590 * 180.02562 * 20 19 17 48 48 H 0.96698 * 114.00171 * 179.80250 * 27 25 10 49 49 H 1.08994 * 109.46314 * 294.17795 * 28 7 6 50 50 H 1.09001 * 109.46133 * 54.16231 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 6 5.3505 3.0594 0.0012 7 7 5.7293 4.4787 0.0011 8 6 4.9413 5.2336 0.9838 9 6 5.2571 6.7256 0.8551 10 6 6.7532 6.9480 1.0933 11 1 6.9903 8.0035 0.9600 12 7 7.0996 6.5368 2.4561 13 6 6.9469 7.3999 3.4799 14 8 6.5222 8.5169 3.2730 15 6 7.3038 6.9771 4.8816 16 16 6.9893 8.3460 6.0232 17 6 7.4794 7.5974 7.5411 18 1 7.8409 6.5796 7.5493 19 6 7.4019 8.3158 8.7261 20 7 7.7685 7.7567 9.8599 21 14 6.7773 10.0763 8.7119 22 1 5.3047 10.0806 8.9028 23 1 7.4214 10.8389 9.8114 24 1 7.1096 10.7088 7.4101 25 6 7.5517 6.1132 0.0883 26 1 7.3243 6.4463 -0.9243 27 8 8.9493 6.2718 0.3401 28 6 7.1694 4.6390 0.2392 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8333 0.9767 0.8907 35 1 3.8340 0.9766 -0.8892 36 1 3.4228 3.4222 -0.8889 37 1 3.4222 3.4218 0.8911 38 1 5.7534 2.5754 0.8909 39 1 5.7533 2.5761 -0.8890 40 1 3.8793 5.0700 0.8006 41 1 5.1928 4.8945 1.9887 42 1 4.6837 7.2840 1.5951 43 1 4.9928 7.0690 -0.1450 44 1 7.4390 5.6433 2.6216 45 1 6.6962 6.1187 5.1680 46 1 8.3586 6.7053 4.9216 47 1 7.7140 8.2586 10.6882 48 1 9.5166 5.7674 -0.2589 49 1 7.4105 4.3028 1.2476 50 1 7.7257 4.0438 -0.4849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099687607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:57 Heat of formation + Delta-G solvation = -134.544179 kcal Electronic energy + Delta-G solvation = -28343.289813 eV Core-core repulsion = 24303.645527 eV Total energy + Delta-G solvation = -4039.644286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52263 -38.79229 -38.33517 -36.86077 -34.92638 -33.16619 -32.42007 -31.74739 -30.87801 -29.85842 -28.58963 -25.95465 -25.56560 -23.72682 -23.36190 -23.17201 -21.19302 -21.01274 -19.24525 -17.96094 -17.62407 -17.13833 -16.84133 -16.67146 -16.14516 -15.93059 -15.55102 -15.39424 -15.07226 -14.93077 -14.56350 -14.34726 -14.10180 -13.70137 -13.57929 -13.35920 -13.15461 -13.03242 -12.83083 -12.75108 -12.52840 -12.20378 -12.10295 -11.98554 -11.75526 -11.58862 -11.54996 -11.33124 -11.24378 -10.99138 -10.89697 -10.73942 -10.51464 -10.29176 -10.01777 -9.83400 -9.45098 -8.99757 -8.94232 -8.68369 -8.47175 -6.88813 -6.27059 -3.98291 2.79696 3.03249 3.04049 3.32935 3.36091 3.50544 3.52775 3.70525 3.90574 4.34531 4.35174 4.48455 4.51732 4.61337 4.61925 4.68352 4.75259 4.82082 4.85859 4.91302 4.92496 4.96353 4.97361 5.04599 5.11997 5.15844 5.21092 5.30039 5.35233 5.37640 5.45567 5.46980 5.59659 5.66506 5.68092 5.74535 5.76627 5.80315 5.92912 5.98818 6.05037 6.58502 6.59751 6.65624 6.79511 7.34104 7.66691 7.96018 8.43359 8.55780 9.19226 10.82192 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.002246 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.930430 B =12461.709869 C =14342.598284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.065 3.935 5 C -0.124 4.124 6 C 0.060 3.940 7 N -0.531 5.531 8 C 0.045 3.955 9 C -0.126 4.126 10 C 0.154 3.846 11 H 0.096 0.904 12 N -0.723 5.723 13 C 0.533 3.467 14 O -0.520 6.520 15 C -0.123 4.123 16 S -0.140 6.140 17 C -0.521 4.521 18 H 0.087 0.913 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.102 3.898 26 H 0.078 0.922 27 O -0.555 6.555 28 C 0.023 3.977 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.270 0.730 48 H 0.377 0.623 49 H 0.043 0.957 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -16.082 -26.327 31.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.309 6.309 4 C -0.013 4.013 5 C -0.161 4.161 6 C -0.068 4.068 7 N -0.258 5.258 8 C -0.083 4.083 9 C -0.165 4.165 10 C 0.049 3.951 11 H 0.114 0.886 12 N -0.377 5.377 13 C 0.319 3.681 14 O -0.395 6.395 15 C -0.274 4.274 16 S 0.086 5.914 17 C -0.668 4.668 18 H 0.105 0.895 19 C -0.114 4.114 20 N -0.518 5.518 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.042 3.958 26 H 0.095 0.905 27 O -0.359 6.359 28 C -0.105 4.105 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.080 0.920 48 H 0.224 0.776 49 H 0.061 0.939 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.658 -13.445 -26.455 30.648 hybrid contribution 1.070 -2.194 0.993 2.635 sum -6.588 -15.639 -25.463 30.599 Atomic orbital electron populations 1.21751 0.93635 1.02296 1.03283 1.22464 0.95730 0.83700 1.00025 1.87888 1.21046 1.26529 1.95431 1.22411 0.81400 0.97303 1.00139 1.21663 0.94975 0.95147 1.04364 1.21985 0.95018 0.88618 1.01155 1.61963 1.03746 1.09680 1.50364 1.22297 0.98781 0.93713 0.93460 1.21979 0.95456 0.95668 1.03411 1.20902 0.93119 1.00115 0.80977 0.88613 1.45906 1.68436 1.16998 1.06350 1.20231 0.76915 0.84781 0.86153 1.90689 1.44104 1.20065 1.84654 1.23268 1.05136 1.04681 0.94320 1.84766 1.86751 1.18085 1.01788 1.22325 1.50339 1.03264 0.90914 0.89463 1.24717 0.93780 0.98560 0.94306 1.69936 1.45910 1.37620 0.98313 0.86728 0.80065 0.84647 0.80374 1.19223 1.19962 1.15889 1.22038 0.81582 0.93369 0.98775 0.90455 1.86658 1.15777 1.72454 1.61051 1.22817 0.89273 0.97762 1.00674 0.91074 0.91711 0.91821 0.93385 0.93468 0.93373 0.93294 0.90014 0.90417 0.94461 0.90408 0.89449 0.94149 0.89683 0.90008 0.76964 0.88796 0.88557 0.91969 0.77553 0.93888 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.38 6.66 37.16 0.25 0.62 16 3 O -0.39 -3.51 10.34 -35.23 -0.36 -3.87 16 4 C 0.06 0.45 5.94 37.16 0.22 0.67 16 5 C -0.12 -0.89 4.83 -26.73 -0.13 -1.02 16 6 C 0.06 0.40 5.27 -3.82 -0.02 0.38 16 7 N -0.53 -4.16 4.81 -234.66 -1.13 -5.29 16 8 C 0.04 0.41 4.70 -3.83 -0.02 0.40 16 9 C -0.13 -1.33 5.77 -26.65 -0.15 -1.48 16 10 C 0.15 1.83 2.51 -67.81 -0.17 1.66 16 11 H 0.10 1.37 7.58 -51.93 -0.39 0.97 16 12 N -0.72 -9.79 4.18 -53.69 -0.22 -10.01 16 13 C 0.53 9.77 7.82 -10.99 -0.09 9.68 16 14 O -0.52 -11.38 15.52 5.55 0.09 -11.29 16 15 C -0.12 -2.47 6.16 36.01 0.22 -2.25 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 17 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 18 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 19 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.86 13.97 55.49 0.78 -26.08 16 21 Si 0.86 22.08 27.74 -169.99 -4.72 17.36 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.23 -6.06 6.74 56.52 0.38 -5.68 16 25 C 0.10 0.90 3.36 -26.65 -0.09 0.81 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 O -0.56 -5.20 13.14 -35.23 -0.46 -5.67 16 28 C 0.02 0.17 4.89 -3.83 -0.02 0.15 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.64 6.21 -51.93 -0.32 0.32 16 38 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.77 5.81 -51.93 -0.30 0.47 16 41 H 0.04 0.42 7.69 -51.93 -0.40 0.02 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.40 4.62 7.01 -40.82 -0.29 4.33 16 45 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 47 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.38 1.77 9.08 45.56 0.41 2.19 16 49 H 0.04 0.35 6.64 -51.93 -0.34 0.01 16 50 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -35.51 409.48 -9.23 -44.73 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.97 Total: 2.64 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 0.60 Total: -3.07 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.58 Total: -41.39 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.74 Total: -20.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.72 Total: 17.36 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.51 -9.23 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.812 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds