Wall clock time and date at job start Wed Apr 1 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46855 * 2 1 4 4 C 1.42899 * 114.00097 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.84621 * 18.80315 * 4 3 2 6 6 C 1.53777 * 113.61240 * 149.99967 * 4 3 2 7 7 C 1.53774 * 87.08054 * 139.98586 * 6 4 3 8 8 H 1.08997 * 113.62038 * 89.20202 * 7 6 4 9 9 N 1.46505 * 113.61454 * 220.01988 * 7 6 4 10 10 C 1.34773 * 120.00136 * 204.99905 * 9 7 6 11 11 O 1.21349 * 119.99815 * 359.97438 * 10 9 7 12 12 C 1.49451 * 120.00261 * 179.97438 * 10 9 7 13 13 O 1.21355 * 119.99655 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00261 * 180.02562 * 12 10 9 15 15 C 1.46505 * 120.00136 * 180.02562 * 14 12 10 16 16 C 1.50698 * 109.47099 * 179.97438 * 15 14 12 17 17 C 1.38637 * 119.75119 * 270.24907 * 16 15 14 18 18 C 1.37613 * 120.24527 * 180.26027 * 17 16 15 19 19 C 1.40709 * 119.74954 * 359.47065 * 18 17 16 20 20 C 1.41391 * 120.24881 * 180.29949 * 19 18 17 21 21 H 1.08004 * 120.00321 * 24.37553 * 20 19 18 22 22 C 1.39949 * 120.00394 * 204.37955 * 20 19 18 23 23 N 1.30826 * 119.99793 * 17.83971 * 22 20 19 24 24 Si 1.86793 * 120.00334 * 197.84214 * 22 20 19 25 25 H 1.48499 * 109.47118 * 89.99811 * 24 22 20 26 26 H 1.48498 * 109.47443 * 210.00158 * 24 22 20 27 27 H 1.48505 * 109.47294 * 329.99982 * 24 22 20 28 28 C 1.40717 * 119.50871 * 0.27696 * 19 18 17 29 29 C 1.37615 * 119.74803 * 359.97438 * 28 19 18 30 30 C 1.53772 * 113.61387 * 247.49746 * 4 3 2 31 31 H 1.08998 * 109.47495 * 60.00671 * 1 2 3 32 32 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47712 * 299.99867 * 1 2 3 34 34 H 1.08997 * 109.47247 * 240.00032 * 2 1 3 35 35 H 1.08999 * 109.46959 * 119.99875 * 2 1 3 36 36 H 1.08996 * 113.61909 * 25.43552 * 6 4 3 37 37 H 1.09004 * 113.68983 * 254.53955 * 6 4 3 38 38 H 0.96995 * 119.99710 * 24.99323 * 9 7 6 39 39 H 0.96995 * 120.00154 * 359.97438 * 14 12 10 40 40 H 1.09001 * 109.46985 * 59.99574 * 15 14 12 41 41 H 1.08999 * 109.46837 * 299.99965 * 15 14 12 42 42 H 1.07998 * 119.87313 * 0.02562 * 17 16 15 43 43 H 1.08007 * 120.12325 * 179.74770 * 18 17 16 44 44 H 0.97001 * 120.00110 * 179.97438 * 23 22 20 45 45 H 1.08004 * 120.12753 * 180.02562 * 28 19 18 46 46 H 1.08003 * 119.87743 * 180.02562 * 29 28 19 47 47 H 1.08998 * 113.61424 * 105.47288 * 30 4 3 48 48 H 1.09001 * 113.62127 * 334.56543 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9280 0.5457 -0.3228 6 6 3.9487 2.7252 -0.7039 7 6 4.9895 2.8316 0.4231 8 1 5.9144 2.2935 0.2157 9 7 5.2203 4.2039 0.8812 10 6 6.3929 4.5336 1.4580 11 8 7.2573 3.6935 1.5984 12 6 6.6286 5.9336 1.9248 13 8 5.7643 6.7737 1.7839 14 7 7.8014 6.2634 2.5011 15 6 8.0323 7.6357 2.9592 16 6 9.4096 7.7391 3.5619 17 6 9.5883 7.4968 4.9152 18 6 10.8406 7.5936 5.4773 19 6 11.9439 7.9289 4.6709 20 6 13.2363 8.0251 5.2361 21 1 13.4708 7.4864 6.1424 22 6 14.2117 8.8183 4.6215 23 7 13.8605 9.7301 3.7514 24 14 16.0151 8.5754 5.0432 25 1 16.6076 7.5711 4.1237 26 1 16.7358 9.8657 4.8977 27 1 16.1359 8.0964 6.4437 28 6 11.7515 8.1675 3.2975 29 6 10.4893 8.0701 2.7578 30 6 4.0017 2.0467 1.3024 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2303 3.5449 -0.7136 37 1 4.3849 2.5331 -1.6842 38 1 4.5292 4.8752 0.7692 39 1 8.4924 5.5920 2.6134 40 1 7.2868 7.8984 3.7098 41 1 7.9530 8.3190 2.1137 42 1 8.7408 7.2349 5.5313 43 1 10.9769 7.4085 6.5326 44 1 14.5365 10.2802 3.3257 45 1 12.5913 8.4252 2.6691 46 1 10.3393 8.2524 1.7039 47 1 4.4805 1.3053 1.9421 48 1 3.2977 2.6808 1.8414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326921143.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:52 Heat of formation + Delta-G solvation = -86.605951 kcal Electronic energy + Delta-G solvation = -28314.118307 eV Core-core repulsion = 24141.108827 eV Total energy + Delta-G solvation = -4173.009479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79725 -39.71551 -38.38354 -37.63847 -36.89101 -34.98048 -33.68289 -33.18519 -31.25860 -30.45025 -29.38469 -27.42401 -26.19713 -25.71556 -24.03692 -23.26345 -22.56213 -21.10416 -20.62037 -20.21531 -20.06469 -18.32513 -17.74797 -17.40885 -16.62594 -16.14755 -16.02249 -15.73008 -15.47743 -15.41812 -14.96194 -14.39331 -14.27010 -14.05751 -13.81473 -13.62357 -13.38946 -13.26771 -12.99438 -12.89426 -12.58409 -12.23631 -12.07443 -12.02430 -11.97676 -11.64290 -11.60081 -11.54201 -11.36608 -11.22917 -11.19012 -11.14315 -10.62891 -10.56535 -9.87422 -9.76570 -9.54909 -9.48325 -9.37545 -9.24312 -8.86754 -7.59251 -7.47865 -6.88532 -4.48335 1.49329 2.27561 2.68550 2.97389 3.01615 3.04893 3.08162 3.29104 3.29676 3.84366 3.86809 4.05066 4.10918 4.39680 4.40512 4.48283 4.62591 4.68853 4.75419 4.91620 4.93257 5.19747 5.31684 5.32825 5.44675 5.52631 5.54760 5.57389 5.63682 5.70759 5.72291 5.81330 6.12476 6.16366 6.22036 6.31217 6.55274 6.82101 6.85204 6.96096 6.99472 7.15849 7.24372 7.49402 7.50737 7.72159 7.84928 7.94120 7.98395 8.15377 8.18590 8.52215 8.77047 8.84762 10.05416 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.028345 B = 0.001490 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.592352 B =18792.907843 C =19082.480611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.373 6.373 4 C 0.066 3.934 5 H 0.092 0.908 6 C -0.143 4.143 7 C 0.122 3.878 8 H 0.122 0.878 9 N -0.693 5.693 10 C 0.509 3.491 11 O -0.518 6.518 12 C 0.497 3.503 13 O -0.535 6.535 14 N -0.682 5.682 15 C 0.182 3.818 16 C -0.251 4.251 17 C -0.067 4.067 18 C -0.229 4.229 19 C 0.118 3.882 20 C -0.457 4.457 21 H 0.080 0.920 22 C 0.076 3.924 23 N -0.786 5.786 24 Si 0.910 3.090 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.169 4.169 29 C -0.079 4.079 30 C -0.168 4.168 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.414 0.586 39 H 0.413 0.587 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.283 0.717 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.573 -15.166 -8.763 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.292 6.292 4 C 0.008 3.992 5 H 0.110 0.890 6 C -0.181 4.181 7 C 0.017 3.983 8 H 0.140 0.860 9 N -0.346 5.346 10 C 0.290 3.710 11 O -0.393 6.393 12 C 0.277 3.723 13 O -0.413 6.413 14 N -0.333 5.333 15 C 0.061 3.939 16 C -0.253 4.253 17 C -0.086 4.086 18 C -0.249 4.249 19 C 0.115 3.885 20 C -0.486 4.486 21 H 0.098 0.902 22 C -0.143 4.143 23 N -0.410 5.410 24 Si 0.734 3.266 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.188 4.188 29 C -0.098 4.098 30 C -0.207 4.207 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.251 0.749 39 H 0.249 0.751 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.137 0.863 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.564 -14.783 -8.893 25.342 hybrid contribution 1.004 -0.209 0.195 1.044 sum -17.560 -14.992 -8.697 24.673 Atomic orbital electron populations 1.21754 0.93726 1.02291 1.03201 1.22532 0.95673 0.83848 1.00102 1.87959 1.20209 1.26426 1.94566 1.23399 0.81471 0.97765 0.96589 0.88969 1.23628 0.97545 0.98539 0.98379 1.22293 0.98292 0.82677 0.95059 0.86026 1.45669 1.17074 1.11999 1.59867 1.20482 0.82654 0.89287 0.78558 1.90764 1.43544 1.50896 1.54106 1.20064 0.83867 0.88146 0.80239 1.90734 1.43878 1.50619 1.56073 1.46495 1.15607 1.14213 1.57019 1.20128 0.95501 0.80328 0.97939 1.18921 0.92915 1.18910 0.94547 1.20405 0.96102 0.98438 0.93641 1.20967 0.92542 1.13345 0.98049 1.17685 0.92266 0.87147 0.91414 1.19690 0.95079 1.24452 1.09365 0.90186 1.25964 1.01723 0.93094 0.93550 1.69822 1.36326 1.13563 1.21315 0.86275 0.81370 0.78674 0.80247 1.19143 1.20204 1.18505 1.21311 0.95748 1.06376 0.95410 1.20557 0.93164 0.99029 0.97031 1.24029 0.98587 1.00311 0.97771 0.91842 0.91111 0.91788 0.93309 0.93265 0.88279 0.89862 0.74933 0.75077 0.91729 0.91633 0.89305 0.88816 0.90627 0.86329 0.89316 0.90428 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.39 16 2 C 0.05 0.33 6.50 37.16 0.24 0.57 16 3 O -0.37 -3.07 10.35 -35.23 -0.36 -3.43 16 4 C 0.07 0.46 4.31 -25.93 -0.11 0.35 16 5 H 0.09 0.49 7.87 -51.93 -0.41 0.08 16 6 C -0.14 -0.97 7.66 -25.92 -0.20 -1.17 16 7 C 0.12 1.05 4.24 -67.12 -0.28 0.76 16 8 H 0.12 1.12 7.46 -51.93 -0.39 0.73 16 9 N -0.69 -7.34 5.35 -53.45 -0.29 -7.63 16 10 C 0.51 7.06 7.89 -11.59 -0.09 6.97 16 11 O -0.52 -8.27 16.08 5.50 0.09 -8.18 16 12 C 0.50 7.75 7.89 -11.59 -0.09 7.66 16 13 O -0.53 -9.14 16.48 5.49 0.09 -9.05 16 14 N -0.68 -11.12 5.54 -61.91 -0.34 -11.47 16 15 C 0.18 3.21 5.79 -5.19 -0.03 3.18 16 16 C -0.25 -5.17 5.27 -104.33 -0.55 -5.72 16 17 C -0.07 -1.43 9.67 -39.66 -0.38 -1.81 16 18 C -0.23 -5.41 9.80 -38.88 -0.38 -5.79 16 19 C 0.12 3.02 5.57 -106.83 -0.60 2.43 16 20 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 21 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 22 C 0.08 1.83 5.14 -17.34 -0.09 1.75 16 23 N -0.79 -19.63 10.95 55.55 0.61 -19.03 16 24 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 28 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 29 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 30 C -0.17 -1.33 7.71 -25.92 -0.20 -1.53 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.41 3.96 8.20 -40.82 -0.33 3.62 16 39 H 0.41 6.76 7.94 -40.82 -0.32 6.43 16 40 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 41 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 42 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 44 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 45 H 0.12 3.06 6.16 -52.48 -0.32 2.74 16 46 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 408.22 15.07 6.15 6.15 Total: -1.00 -28.65 408.22 -9.77 -38.43 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -7.24 Total: 12.68 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.45 Total: -11.48 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.02 Total: -38.12 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.19 Total: -20.67 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -28.65 -9.77 -38.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326921143.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.181 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds