Wall clock time and date at job start Wed Apr 1 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99865 * 2 1 4 4 C 1.34778 * 119.99873 * 179.97438 * 2 1 3 5 5 O 1.21271 * 119.99942 * 0.02562 * 4 2 1 6 6 C 1.50695 * 119.99686 * 180.02562 * 4 2 1 7 7 H 1.09000 * 110.55771 * 55.70435 * 6 4 2 8 8 C 1.55000 * 110.62066 * 292.81773 * 6 4 2 9 9 C 1.55230 * 101.90332 * 204.40874 * 8 6 4 10 10 C 1.54103 * 104.22567 * 20.84927 * 9 8 6 11 11 H 1.08993 * 109.87914 * 242.61235 * 10 9 8 12 12 C 1.53001 * 110.00349 * 121.53486 * 10 9 8 13 13 N 1.46496 * 109.47566 * 180.64234 * 12 10 9 14 14 C 1.34773 * 120.00388 * 179.97438 * 13 12 10 15 15 O 1.21606 * 119.99897 * 0.02562 * 14 13 12 16 16 C 1.47429 * 119.99875 * 179.97438 * 14 13 12 17 17 C 1.39223 * 120.28663 * 354.97308 * 16 14 13 18 18 C 1.38217 * 120.09366 * 179.97438 * 17 16 14 19 19 C 1.38825 * 120.67864 * 0.02562 * 18 17 16 20 20 C 1.37598 * 120.56866 * 359.97438 * 19 18 17 21 21 C 1.40702 * 119.88135 * 359.73794 * 20 19 18 22 22 C 1.40886 * 120.32987 * 180.25172 * 21 20 19 23 23 H 1.08002 * 120.00185 * 141.52800 * 22 21 20 24 24 C 1.40270 * 120.00394 * 321.53349 * 22 21 20 25 25 N 1.30627 * 120.00313 * 174.39408 * 24 22 21 26 26 Si 1.86797 * 119.99920 * 354.39894 * 24 22 21 27 27 H 1.48502 * 109.47327 * 89.36711 * 26 24 22 28 28 H 1.48503 * 109.47490 * 209.36961 * 26 24 22 29 29 H 1.48500 * 109.47040 * 329.36774 * 26 24 22 30 30 O 1.43744 * 107.29470 * 2.03868 * 10 9 8 31 31 H 1.09000 * 109.47498 * 270.00395 * 1 2 3 32 32 H 1.09008 * 109.46658 * 30.00387 * 1 2 3 33 33 H 1.09002 * 109.46807 * 150.00009 * 1 2 3 34 34 H 1.09010 * 109.46866 * 269.99454 * 3 2 1 35 35 H 1.08994 * 109.47654 * 29.99288 * 3 2 1 36 36 H 1.09000 * 109.47148 * 149.99768 * 3 2 1 37 37 H 1.08993 * 110.90595 * 322.52266 * 8 6 4 38 38 H 1.09004 * 110.90400 * 86.12135 * 8 6 4 39 39 H 1.08991 * 110.46039 * 262.16727 * 9 8 6 40 40 H 1.08997 * 110.58929 * 139.59951 * 9 8 6 41 41 H 1.09007 * 109.46648 * 300.63715 * 12 10 9 42 42 H 1.08992 * 109.47286 * 60.63277 * 12 10 9 43 43 H 0.97006 * 119.99571 * 359.97438 * 13 12 10 44 44 H 1.07997 * 119.95432 * 359.97438 * 17 16 14 45 45 H 1.08005 * 119.66210 * 179.97438 * 18 17 16 46 46 H 1.08003 * 119.71571 * 179.97438 * 19 18 17 47 47 H 1.07999 * 120.05702 * 179.97438 * 20 19 18 48 48 H 0.97000 * 119.99992 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2174 0.0005 6 6 3.6458 -1.1672 0.0011 7 1 4.0282 -0.5919 0.8443 8 6 4.1922 -0.6049 -1.3360 9 6 5.5996 -1.2561 -1.4059 10 6 5.5013 -2.4723 -0.4646 11 1 6.2002 -2.3572 0.3637 12 6 5.8145 -3.7568 -1.2346 13 7 5.7028 -4.9062 -0.3332 14 6 5.9358 -6.1504 -0.7957 15 8 6.2392 -6.3190 -1.9612 16 6 5.8239 -7.3070 0.1117 17 6 5.5810 -7.1138 1.4689 18 6 5.4763 -8.2010 2.3159 19 6 5.6116 -9.4939 1.8288 20 6 5.8521 -9.7167 0.4925 21 6 5.9570 -8.6275 -0.3920 22 6 6.1977 -8.8450 -1.7630 23 1 5.7068 -8.2290 -2.5019 24 6 7.0750 -9.8616 -2.1685 25 7 7.2149 -10.1359 -3.4380 26 14 8.0433 -10.8234 -0.8931 27 1 7.2528 -12.0025 -0.4570 28 1 9.3263 -11.2793 -1.4858 29 1 8.3207 -9.9530 0.2777 30 8 4.1543 -2.5181 0.0352 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 2.3792 1.5833 -1.0278 35 1 1.6084 2.0284 0.5137 36 1 3.1499 1.1384 0.5139 37 1 3.5733 -0.9246 -2.1742 38 1 4.2647 0.4822 -1.3001 39 1 6.3596 -0.5599 -1.0515 40 1 5.8229 -1.5780 -2.4231 41 1 5.1070 -3.8694 -2.0563 42 1 6.8278 -3.7040 -1.6324 43 1 5.4611 -4.7716 0.5966 44 1 5.4742 -6.1130 1.8604 45 1 5.2882 -8.0430 3.3676 46 1 5.5274 -10.3322 2.5047 47 1 5.9563 -10.7260 0.1225 48 1 7.8218 -10.8387 -3.7183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601407708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:33 Heat of formation + Delta-G solvation = -81.361224 kcal Electronic energy + Delta-G solvation = -30288.791473 eV Core-core repulsion = 26116.009422 eV Total energy + Delta-G solvation = -4172.782051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.74247 -39.21116 -38.60126 -36.88926 -35.89401 -34.19497 -33.43131 -32.46707 -31.11158 -30.37900 -29.79589 -28.31560 -27.02839 -25.55321 -24.80133 -22.92356 -22.08927 -21.38202 -20.80258 -19.77887 -19.29740 -17.79467 -17.43154 -16.94314 -16.56532 -16.47928 -16.07555 -15.55694 -15.24468 -15.11278 -14.43411 -14.10004 -14.02515 -13.97919 -13.89273 -13.44420 -13.40092 -13.12635 -13.02153 -12.81028 -12.59740 -12.42303 -12.36298 -12.21520 -12.14748 -11.92216 -11.73855 -11.53025 -11.38022 -11.07068 -10.87027 -10.63550 -10.38325 -10.14009 -10.00221 -9.75196 -9.70507 -9.19121 -9.08706 -8.43673 -8.28643 -7.73324 -7.50320 -6.79368 -4.37795 2.18846 2.30669 2.42894 2.67523 3.15020 3.23257 3.34880 3.51459 3.93607 4.03095 4.07562 4.11077 4.22069 4.45510 4.58512 4.64858 4.70503 4.74522 4.82777 4.86031 4.97877 5.12207 5.15985 5.22301 5.26468 5.36844 5.46397 5.48067 5.57744 5.69541 5.81835 5.88246 5.97480 6.02801 6.07992 6.19845 6.46755 6.58026 6.58533 6.87330 6.93273 7.17461 7.21783 7.31242 7.46996 7.65899 7.82469 7.88203 8.08998 8.43548 8.56948 8.71514 8.92412 9.44645 10.19160 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.002447 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.821190 B =11438.386991 C =12105.592852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.075 3.925 4 C 0.516 3.484 5 O -0.507 6.507 6 C 0.060 3.940 7 H 0.095 0.905 8 C -0.143 4.143 9 C -0.146 4.146 10 C 0.063 3.937 11 H 0.079 0.921 12 C 0.130 3.870 13 N -0.742 5.742 14 C 0.561 3.439 15 O -0.527 6.527 16 C -0.243 4.243 17 C -0.042 4.042 18 C -0.251 4.251 19 C -0.066 4.066 20 C -0.226 4.226 21 C 0.118 3.882 22 C -0.397 4.397 23 H 0.114 0.886 24 C 0.078 3.922 25 N -0.801 5.801 26 Si 0.908 3.092 27 H -0.269 1.269 28 H -0.291 1.291 29 H -0.243 1.243 30 O -0.335 6.335 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.395 0.605 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 24.665 7.083 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.361 5.361 3 C -0.068 4.068 4 C 0.303 3.697 5 O -0.380 6.380 6 C -0.002 4.002 7 H 0.112 0.888 8 C -0.181 4.181 9 C -0.184 4.184 10 C 0.005 3.995 11 H 0.097 0.903 12 C 0.005 3.995 13 N -0.398 5.398 14 C 0.354 3.646 15 O -0.405 6.405 16 C -0.248 4.248 17 C -0.061 4.061 18 C -0.271 4.271 19 C -0.085 4.085 20 C -0.245 4.245 21 C 0.113 3.887 22 C -0.424 4.424 23 H 0.132 0.868 24 C -0.141 4.141 25 N -0.425 5.425 26 Si 0.735 3.265 27 H -0.195 1.195 28 H -0.218 1.218 29 H -0.166 1.166 30 O -0.254 6.254 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.230 0.770 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.123 0.877 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.419 23.634 6.010 24.981 hybrid contribution 0.408 -0.063 0.932 1.020 sum -5.012 23.571 6.942 25.078 Atomic orbital electron populations 1.21651 0.78668 1.03304 1.02005 1.47655 1.07204 1.06048 1.75184 1.21930 0.97373 0.85405 1.02112 1.20292 0.89285 0.83518 0.76634 1.90781 1.69641 1.30749 1.46863 1.22932 0.91598 0.86601 0.99025 0.88784 1.23224 0.96795 1.01121 0.96923 1.22999 0.96994 0.96644 1.01812 1.23144 0.84597 0.95571 0.96207 0.90336 1.21335 1.01548 0.83506 0.93084 1.45871 1.74496 1.05909 1.13499 1.18343 0.76406 0.82048 0.87846 1.90761 1.47139 1.84823 1.17733 1.19482 1.20154 0.92753 0.92385 1.20809 0.95384 0.96928 0.92933 1.20302 1.16061 0.92664 0.98045 1.20739 0.96974 0.95948 0.94829 1.21169 1.11426 0.97876 0.94067 1.17577 0.88302 0.89551 0.93230 1.19922 1.19623 1.10871 0.92030 0.86809 1.26291 0.96758 0.94929 0.96104 1.69551 1.30249 1.25804 1.16879 0.86394 0.78127 0.80208 0.81775 1.19499 1.21822 1.16622 1.89120 1.27366 1.23783 1.85088 0.92613 0.91117 0.90329 0.92171 0.90742 0.90859 0.89800 0.89245 0.89810 0.89236 0.91390 0.90696 0.77030 0.88584 0.88505 0.88560 0.87714 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.44 59.85 0.62 1.24 16 2 N -0.62 -5.09 3.27 -189.51 -0.62 -5.71 16 3 C 0.07 0.28 9.05 59.85 0.54 0.82 16 4 C 0.52 6.27 7.10 -10.99 -0.08 6.20 16 5 O -0.51 -8.90 16.14 -13.50 -0.22 -9.12 16 6 C 0.06 0.60 2.79 -26.83 -0.07 0.52 16 7 H 0.09 0.68 7.21 -51.93 -0.37 0.30 16 8 C -0.14 -1.05 5.92 -24.49 -0.14 -1.20 16 9 C -0.15 -1.16 6.66 -24.97 -0.17 -1.32 16 10 C 0.06 0.72 3.49 -26.15 -0.09 0.63 16 11 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 12 C 0.13 2.03 5.16 -4.04 -0.02 2.01 16 13 N -0.74 -14.04 5.42 -61.39 -0.33 -14.38 16 14 C 0.56 13.57 7.72 -12.52 -0.10 13.47 16 15 O -0.53 -14.68 13.68 5.27 0.07 -14.61 16 16 C -0.24 -6.04 5.92 -104.37 -0.62 -6.65 16 17 C -0.04 -0.89 9.52 -39.22 -0.37 -1.26 16 18 C -0.25 -5.23 10.03 -39.37 -0.39 -5.62 16 19 C -0.07 -1.44 10.01 -39.60 -0.40 -1.84 16 20 C -0.23 -5.58 6.94 -38.89 -0.27 -5.85 16 21 C 0.12 3.18 5.04 -106.54 -0.54 2.65 16 22 C -0.40 -11.61 8.08 -37.82 -0.31 -11.91 16 23 H 0.11 3.68 6.37 -52.49 -0.33 3.35 16 24 C 0.08 2.17 5.51 -17.30 -0.10 2.08 16 25 N -0.80 -22.61 13.92 55.56 0.77 -21.84 16 26 Si 0.91 21.55 24.48 -169.99 -4.16 17.39 16 27 H -0.27 -6.06 6.71 56.52 0.38 -5.69 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.24 -5.89 6.67 56.52 0.38 -5.51 16 30 O -0.34 -4.72 10.30 -54.30 -0.56 -5.27 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.30 8.07 -51.92 -0.42 -0.12 16 33 H 0.08 0.73 7.42 -51.93 -0.39 0.34 16 34 H 0.06 0.16 7.75 -51.92 -0.40 -0.24 16 35 H 0.07 0.16 8.07 -51.93 -0.42 -0.26 16 36 H 0.07 0.20 6.06 -51.93 -0.31 -0.11 16 37 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 38 H 0.09 0.36 6.71 -51.93 -0.35 0.01 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.73 7.70 -51.93 -0.40 0.33 16 41 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.40 6.73 6.46 -40.82 -0.26 6.47 16 44 H 0.10 1.73 6.43 -52.49 -0.34 1.39 16 45 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 46 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 47 H 0.11 2.53 4.87 -52.49 -0.26 2.28 16 48 H 0.29 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -37.22 383.37 -8.58 -45.80 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.81 Total: 8.00 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.50 Total: -6.04 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.18 Total: -41.93 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.70 Total: -29.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.16 Total: 17.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.22 -8.58 -45.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601407708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.558 kcal (2) G-P(sol) polarization free energy of solvation -37.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds