Wall clock time and date at job start Wed Apr 1 2020 04:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35984 * 117.00214 * 2 1 4 4 C 1.38971 * 119.90697 * 0.02562 * 3 2 1 5 5 C 1.38031 * 120.33619 * 179.97438 * 4 3 2 6 6 C 1.38677 * 120.14675 * 359.74940 * 5 4 3 7 7 O 1.35733 * 120.09003 * 180.25412 * 6 5 4 8 8 C 1.42897 * 117.00409 * 0.22696 * 7 6 5 9 9 C 1.40086 * 119.81156 * 0.47930 * 6 5 4 10 10 C 1.47541 * 120.16669 * 179.79113 * 9 6 5 11 11 O 1.21589 * 119.99532 * 359.72624 * 10 9 6 12 12 N 1.34774 * 120.00336 * 179.72602 * 10 9 6 13 13 C 1.46499 * 120.00333 * 179.97438 * 12 10 9 14 14 H 1.09008 * 110.68243 * 32.01330 * 13 12 10 15 15 C 1.55478 * 110.75775 * 268.96043 * 13 12 10 16 16 C 1.55845 * 103.32174 * 241.51067 * 15 13 12 17 17 H 1.09005 * 116.12422 * 159.23661 * 16 15 13 18 18 C 1.56855 * 105.77912 * 288.56510 * 16 15 13 19 19 C 1.54844 * 103.35668 * 71.46140 * 18 16 15 20 20 C 1.55840 * 110.62582 * 154.99586 * 13 12 10 21 21 H 1.08998 * 115.56895 * 319.68410 * 20 13 12 22 22 N 1.50234 * 101.05342 * 33.02501 * 16 15 13 23 23 C 1.36945 * 130.84057 * 126.06247 * 22 16 15 24 24 H 1.07999 * 120.00077 * 179.66596 * 23 22 16 25 25 C 1.38812 * 119.99637 * 359.66430 * 23 22 16 26 26 N 1.31617 * 120.00227 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99854 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47118 * 90.00067 * 27 25 23 29 29 H 1.48499 * 109.47293 * 210.00071 * 27 25 23 30 30 H 1.48504 * 109.47104 * 330.00316 * 27 25 23 31 31 C 1.38234 * 119.91086 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47319 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47266 * 299.99774 * 1 2 3 34 34 H 1.09009 * 109.46779 * 59.99767 * 1 2 3 35 35 H 1.07995 * 119.82951 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.92004 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47035 * 179.97438 * 8 7 6 38 38 H 1.09001 * 109.47299 * 300.00200 * 8 7 6 39 39 H 1.09005 * 109.46977 * 59.99957 * 8 7 6 40 40 H 0.96999 * 119.99702 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.61164 * 123.09871 * 15 13 12 42 42 H 1.08997 * 110.75754 * 359.97438 * 15 13 12 43 43 H 1.09001 * 110.43268 * 313.10489 * 18 16 15 44 44 H 1.09001 * 111.03898 * 190.09807 * 18 16 15 45 45 H 1.09004 * 110.62498 * 241.78509 * 19 18 16 46 46 H 1.08994 * 110.76793 * 118.82867 * 19 18 16 47 47 H 0.97005 * 120.00046 * 179.97438 * 26 25 23 48 48 H 1.08000 * 120.06953 * 0.02609 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2877 2.3759 0.0005 5 6 1.9051 3.6104 0.0011 6 6 3.2892 3.6969 0.0063 7 8 3.8952 4.9114 0.0121 8 6 3.0456 6.0604 0.0174 9 6 4.0601 2.5272 0.0009 10 6 5.5332 2.6101 0.0018 11 8 6.0809 3.6956 0.0022 12 7 6.2716 1.4826 0.0022 13 6 7.7343 1.5649 0.0025 14 1 8.0700 2.4500 0.5430 15 6 8.2862 1.5692 -1.4510 16 6 9.1636 0.2824 -1.5058 17 1 9.3704 -0.1156 -2.4993 18 6 10.4277 0.5904 -0.6297 19 6 9.8706 0.5894 0.8150 20 6 8.3565 0.2761 0.6193 21 1 7.8420 -0.1227 1.4936 22 7 8.4020 -0.6250 -0.5819 23 6 7.9068 -1.8873 -0.7737 24 1 7.3818 -2.3887 0.0259 25 6 8.0796 -2.5223 -1.9959 26 7 8.7197 -1.9115 -2.9702 27 14 7.4047 -4.2445 -2.2573 28 1 6.0171 -4.1584 -2.7793 29 1 8.2574 -4.9672 -3.2350 30 1 7.4030 -4.9768 -0.9654 31 6 3.4270 1.2817 0.0005 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8901 35 1 0.2095 2.3145 0.0014 36 1 1.3090 4.5109 0.0011 37 1 3.6559 6.9635 0.0221 38 1 2.4164 6.0512 -0.8727 39 1 2.4163 6.0428 0.9073 40 1 5.8346 0.6167 0.0015 41 1 8.8944 2.4564 -1.6279 42 1 7.4723 1.5097 -2.1735 43 1 10.8371 1.5684 -0.8829 44 1 11.1851 -0.1842 -0.7497 45 1 10.0035 1.5671 1.2784 46 1 10.3490 -0.1860 1.4132 47 1 8.8408 -2.3554 -3.8242 48 1 4.0149 0.3758 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098361284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:06 Heat of formation + Delta-G solvation = -27.390828 kcal Electronic energy + Delta-G solvation = -31256.404831 eV Core-core repulsion = 27085.963112 eV Total energy + Delta-G solvation = -4170.441719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74842 -39.48596 -39.05154 -38.00128 -36.24566 -33.68489 -32.50131 -31.50581 -29.87974 -29.04092 -28.76992 -27.88575 -27.20777 -27.00204 -24.24911 -23.73640 -22.21054 -21.23612 -19.90334 -19.74586 -18.85364 -18.25641 -17.70739 -16.95406 -16.87781 -16.23823 -16.00807 -15.63665 -15.47419 -14.86846 -14.77488 -14.65436 -14.26190 -13.95261 -13.78822 -13.55948 -13.08124 -12.98852 -12.73936 -12.67764 -12.45753 -11.99156 -11.77682 -11.72280 -11.71069 -11.16867 -11.09520 -11.04181 -10.88401 -10.86219 -10.53984 -10.43856 -10.27699 -10.05541 -9.86051 -9.58391 -9.22000 -9.16129 -9.10233 -8.91540 -8.32833 -7.84045 -6.89747 -5.70121 -3.09005 0.75569 1.31490 3.07606 3.09092 3.27343 3.39778 3.44820 3.46571 3.67866 3.92188 4.44940 4.48221 4.57328 4.84839 4.89045 4.94168 5.02798 5.04014 5.18131 5.21200 5.25832 5.31142 5.38259 5.41225 5.58435 5.69330 5.73664 5.78114 5.94154 5.99687 6.09912 6.11987 6.19452 6.22392 6.32204 6.38216 6.49457 6.55772 6.67854 6.81294 6.88710 7.02516 7.16767 7.21147 7.36077 7.40676 7.52091 7.84083 8.11754 8.22132 8.75230 9.11638 9.74962 10.56482 11.38816 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.003859 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.401777 B = 7253.421318 C = 9517.088444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.082 3.918 4 C -0.146 4.146 5 C -0.184 4.184 6 C 0.148 3.852 7 O -0.278 6.278 8 C 0.022 3.978 9 C -0.124 4.124 10 C 0.555 3.445 11 O -0.528 6.528 12 N -0.702 5.702 13 C 0.131 3.869 14 H 0.081 0.919 15 C -0.141 4.141 16 C 0.153 3.847 17 H 0.153 0.847 18 C -0.139 4.139 19 C -0.127 4.127 20 C 0.125 3.875 21 H 0.086 0.914 22 N -0.592 5.592 23 C -0.213 4.213 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.913 3.087 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 C -0.077 4.077 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.401 0.599 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.253 0.747 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 10.647 6.661 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.038 3.962 4 C -0.165 4.165 5 C -0.203 4.203 6 C 0.100 3.900 7 O -0.190 6.190 8 C -0.073 4.073 9 C -0.128 4.128 10 C 0.341 3.659 11 O -0.406 6.406 12 N -0.352 5.352 13 C 0.024 3.976 14 H 0.099 0.901 15 C -0.181 4.181 16 C 0.047 3.953 17 H 0.169 0.831 18 C -0.178 4.178 19 C -0.167 4.167 20 C 0.016 3.984 21 H 0.104 0.896 22 N -0.313 5.313 23 C -0.341 4.341 24 H 0.096 0.904 25 C -0.205 4.205 26 N -0.567 5.567 27 Si 0.744 3.256 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 C -0.096 4.096 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.237 0.763 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.499 10.984 6.485 19.311 hybrid contribution -1.235 -1.073 -0.169 1.645 sum -15.734 9.911 6.316 19.639 Atomic orbital electron populations 1.23037 0.78682 1.04007 1.00995 1.86144 1.21036 1.26208 1.89325 1.18683 0.91935 0.84445 1.01178 1.21140 1.00049 0.91603 1.03690 1.20965 0.92889 0.98533 1.07900 1.18905 0.90315 0.85475 0.95328 1.86418 1.33927 1.11304 1.87302 1.23112 0.95807 0.87623 1.00783 1.19300 0.93911 0.90588 1.09024 1.17833 0.85710 0.84790 0.77522 1.90781 1.72627 1.27428 1.49741 1.45922 1.07628 1.08225 1.73472 1.22700 0.77914 0.99055 0.97884 0.90111 1.23520 1.00151 0.99188 0.95247 1.23952 0.87378 0.86319 0.97666 0.83062 1.23223 0.99777 0.99054 0.95772 1.22857 0.97017 0.99314 0.97503 1.23165 0.94215 0.89507 0.91496 0.89561 1.46557 1.63266 1.13149 1.08322 1.19004 1.28645 0.89030 0.97456 0.90419 1.24683 1.01172 0.98599 0.96077 1.69464 1.46372 1.36917 1.03963 0.86089 0.78202 0.83818 0.77475 1.21675 1.21766 1.20813 1.20529 0.91853 0.97259 0.99966 0.88199 0.92864 0.92813 0.84963 0.84689 0.88135 0.92891 0.92940 0.76307 0.92815 0.92133 0.93452 0.92654 0.93031 0.92487 0.93597 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.88 10.49 -19.69 -0.21 -4.09 16 3 C 0.08 1.06 6.68 -39.31 -0.26 0.80 16 4 C -0.15 -1.56 9.02 -39.39 -0.36 -1.91 16 5 C -0.18 -2.05 9.02 -39.50 -0.36 -2.41 16 6 C 0.15 2.15 6.70 -38.73 -0.26 1.89 16 7 O -0.28 -4.18 8.56 -40.82 -0.35 -4.53 16 8 C 0.02 0.21 9.81 101.05 0.99 1.20 16 9 C -0.12 -2.01 5.88 -104.86 -0.62 -2.62 16 10 C 0.56 10.46 7.76 -12.47 -0.10 10.36 16 11 O -0.53 -11.36 14.80 -16.63 -0.25 -11.61 16 12 N -0.70 -13.03 5.04 -52.11 -0.26 -13.29 16 13 C 0.13 2.55 2.84 -65.10 -0.18 2.37 16 14 H 0.08 1.58 7.26 -51.92 -0.38 1.20 16 15 C -0.14 -2.98 6.28 -23.90 -0.15 -3.13 16 16 C 0.15 3.55 4.72 -62.24 -0.29 3.26 16 17 H 0.15 4.01 5.52 -51.93 -0.29 3.72 16 18 C -0.14 -2.80 6.50 -23.67 -0.15 -2.95 16 19 C -0.13 -2.36 6.46 -24.24 -0.16 -2.52 16 20 C 0.12 2.49 5.01 -62.80 -0.31 2.18 16 21 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 22 N -0.59 -14.20 2.97 -145.21 -0.43 -14.63 16 23 C -0.21 -5.62 10.59 -15.06 -0.16 -5.77 16 24 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 26 N -0.92 -25.96 10.47 55.49 0.58 -25.38 16 27 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 31 C -0.08 -1.12 9.47 -39.03 -0.37 -1.49 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 34 H 0.05 0.35 7.66 -51.92 -0.40 -0.05 16 35 H 0.13 1.00 6.27 -52.49 -0.33 0.67 16 36 H 0.14 1.09 6.29 -52.49 -0.33 0.76 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 39 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 40 H 0.40 7.21 6.69 -40.82 -0.27 6.94 16 41 H 0.05 1.06 7.88 -51.93 -0.41 0.65 16 42 H 0.06 1.39 8.00 -51.93 -0.42 0.98 16 43 H 0.05 0.86 7.88 -51.93 -0.41 0.45 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.15 2.10 6.40 -52.49 -0.34 1.77 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -32.63 382.77 -8.84 -41.46 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.82 Total: 9.61 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.84 Total: 0.09 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.11 Total: -53.29 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.80 Total: -20.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.63 -8.84 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098361284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.073 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds