Wall clock time and date at job start Wed Apr 1 2020 04:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35984 * 117.00214 * 2 1 4 4 C 1.38971 * 119.90697 * 0.02562 * 3 2 1 5 5 C 1.38031 * 120.33619 * 179.97438 * 4 3 2 6 6 C 1.38677 * 120.14675 * 359.74940 * 5 4 3 7 7 O 1.35733 * 120.09003 * 180.25412 * 6 5 4 8 8 C 1.42897 * 117.00409 * 0.22696 * 7 6 5 9 9 C 1.40086 * 119.81156 * 0.47930 * 6 5 4 10 10 C 1.47541 * 120.16669 * 179.79113 * 9 6 5 11 11 O 1.21589 * 119.99532 * 359.72624 * 10 9 6 12 12 N 1.34774 * 120.00336 * 179.72602 * 10 9 6 13 13 C 1.46499 * 120.00333 * 179.97438 * 12 10 9 14 14 H 1.09008 * 110.68243 * 32.01330 * 13 12 10 15 15 C 1.55478 * 110.75775 * 268.96043 * 13 12 10 16 16 C 1.55845 * 103.32174 * 241.51067 * 15 13 12 17 17 H 1.09005 * 116.12422 * 159.23661 * 16 15 13 18 18 C 1.56855 * 105.77912 * 288.56510 * 16 15 13 19 19 C 1.54844 * 103.35668 * 71.46140 * 18 16 15 20 20 C 1.55840 * 110.62582 * 154.99586 * 13 12 10 21 21 H 1.08998 * 115.56895 * 319.68410 * 20 13 12 22 22 N 1.50234 * 101.05342 * 33.02501 * 16 15 13 23 23 C 1.36945 * 130.84057 * 126.06247 * 22 16 15 24 24 H 1.07999 * 120.00077 * 179.66596 * 23 22 16 25 25 C 1.38812 * 119.99637 * 359.66430 * 23 22 16 26 26 N 1.31617 * 120.00227 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99854 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47118 * 90.00067 * 27 25 23 29 29 H 1.48499 * 109.47293 * 210.00071 * 27 25 23 30 30 H 1.48504 * 109.47104 * 330.00316 * 27 25 23 31 31 C 1.38234 * 119.91086 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47319 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47266 * 299.99774 * 1 2 3 34 34 H 1.09009 * 109.46779 * 59.99767 * 1 2 3 35 35 H 1.07995 * 119.82951 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.92004 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47035 * 179.97438 * 8 7 6 38 38 H 1.09001 * 109.47299 * 300.00200 * 8 7 6 39 39 H 1.09005 * 109.46977 * 59.99957 * 8 7 6 40 40 H 0.96999 * 119.99702 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.61164 * 123.09871 * 15 13 12 42 42 H 1.08997 * 110.75754 * 359.97438 * 15 13 12 43 43 H 1.09001 * 110.43268 * 313.10489 * 18 16 15 44 44 H 1.09001 * 111.03898 * 190.09807 * 18 16 15 45 45 H 1.09004 * 110.62498 * 241.78509 * 19 18 16 46 46 H 1.08994 * 110.76793 * 118.82867 * 19 18 16 47 47 H 0.97005 * 120.00046 * 179.97438 * 26 25 23 48 48 H 1.08000 * 120.06953 * 0.02609 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2877 2.3759 0.0005 5 6 1.9051 3.6104 0.0011 6 6 3.2892 3.6969 0.0063 7 8 3.8952 4.9114 0.0121 8 6 3.0456 6.0604 0.0174 9 6 4.0601 2.5272 0.0009 10 6 5.5332 2.6101 0.0018 11 8 6.0809 3.6956 0.0022 12 7 6.2716 1.4826 0.0022 13 6 7.7343 1.5649 0.0025 14 1 8.0700 2.4500 0.5430 15 6 8.2862 1.5692 -1.4510 16 6 9.1636 0.2824 -1.5058 17 1 9.3704 -0.1156 -2.4993 18 6 10.4277 0.5904 -0.6297 19 6 9.8706 0.5894 0.8150 20 6 8.3565 0.2761 0.6193 21 1 7.8420 -0.1227 1.4936 22 7 8.4020 -0.6250 -0.5819 23 6 7.9068 -1.8873 -0.7737 24 1 7.3818 -2.3887 0.0259 25 6 8.0796 -2.5223 -1.9959 26 7 8.7197 -1.9115 -2.9702 27 14 7.4047 -4.2445 -2.2573 28 1 6.0171 -4.1584 -2.7793 29 1 8.2574 -4.9672 -3.2350 30 1 7.4030 -4.9768 -0.9654 31 6 3.4270 1.2817 0.0005 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8901 35 1 0.2095 2.3145 0.0014 36 1 1.3090 4.5109 0.0011 37 1 3.6559 6.9635 0.0221 38 1 2.4164 6.0512 -0.8727 39 1 2.4163 6.0428 0.9073 40 1 5.8346 0.6167 0.0015 41 1 8.8944 2.4564 -1.6279 42 1 7.4723 1.5097 -2.1735 43 1 10.8371 1.5684 -0.8829 44 1 11.1851 -0.1842 -0.7497 45 1 10.0035 1.5671 1.2784 46 1 10.3490 -0.1860 1.4132 47 1 8.8408 -2.3554 -3.8242 48 1 4.0149 0.3758 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098361284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:05 Heat of formation + Delta-G solvation = -47.391075 kcal Electronic energy + Delta-G solvation = -31257.272107 eV Core-core repulsion = 27085.963112 eV Total energy + Delta-G solvation = -4171.308995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82493 -40.95444 -40.04715 -39.43931 -37.22667 -35.26639 -34.40149 -32.58007 -30.93157 -30.78731 -30.38589 -29.29308 -28.14494 -27.76363 -26.12899 -24.95357 -23.29567 -22.55346 -21.51676 -21.26435 -20.40174 -19.50922 -18.82413 -18.63101 -17.93360 -17.42715 -16.96588 -16.87516 -16.69347 -16.43106 -15.90510 -15.85544 -15.60113 -15.45550 -15.31832 -14.88893 -14.30108 -14.23393 -13.74403 -13.72971 -13.65750 -13.50765 -13.26065 -12.89809 -12.85669 -12.73971 -12.68696 -12.49339 -12.44528 -12.10215 -11.95440 -11.89511 -11.86254 -11.69486 -11.36300 -11.19126 -10.92428 -10.91195 -10.66361 -10.26765 -9.88116 -8.85531 -8.79995 -7.73727 -5.13527 -0.28706 0.33913 1.49925 1.50579 1.58482 1.86232 2.20060 2.31442 2.48133 2.52120 2.75181 3.39530 3.46251 3.61417 3.63903 4.00607 4.03772 4.06387 4.10190 4.20773 4.28818 4.36876 4.42536 4.43359 4.44992 4.47607 4.49602 4.61258 4.65916 4.68898 4.70929 4.77141 4.79806 4.84309 4.92350 5.08673 5.10185 5.15630 5.17677 5.21139 5.38099 5.39862 5.53136 5.62005 5.73412 5.91484 6.28991 6.33385 6.48010 6.66040 7.07999 7.29499 7.74466 8.60613 9.33603 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.003859 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.401777 B = 7253.421318 C = 9517.088444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.077 3.923 4 C -0.127 4.127 5 C -0.171 4.171 6 C 0.136 3.864 7 O -0.314 6.314 8 C 0.012 3.988 9 C -0.156 4.156 10 C 0.554 3.446 11 O -0.562 6.562 12 N -0.703 5.703 13 C 0.141 3.859 14 H 0.087 0.913 15 C -0.131 4.131 16 C 0.140 3.860 17 H 0.116 0.884 18 C -0.131 4.131 19 C -0.118 4.118 20 C 0.126 3.874 21 H 0.099 0.901 22 N -0.611 5.611 23 C -0.214 4.214 24 H 0.084 0.916 25 C -0.066 4.066 26 N -0.948 5.948 27 Si 0.973 3.027 28 H -0.291 1.291 29 H -0.300 1.300 30 H -0.271 1.271 31 C -0.092 4.092 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.402 0.598 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.245 0.755 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.890 11.690 8.265 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.032 3.968 4 C -0.146 4.146 5 C -0.190 4.190 6 C 0.088 3.912 7 O -0.227 6.227 8 C -0.082 4.082 9 C -0.160 4.160 10 C 0.342 3.658 11 O -0.442 6.442 12 N -0.352 5.352 13 C 0.034 3.966 14 H 0.105 0.895 15 C -0.171 4.171 16 C 0.034 3.966 17 H 0.134 0.866 18 C -0.170 4.170 19 C -0.157 4.157 20 C 0.019 3.981 21 H 0.117 0.883 22 N -0.332 5.332 23 C -0.343 4.343 24 H 0.102 0.898 25 C -0.259 4.259 26 N -0.598 5.598 27 Si 0.802 3.198 28 H -0.218 1.218 29 H -0.227 1.227 30 H -0.196 1.196 31 C -0.112 4.112 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.190 0.810 36 H 0.191 0.809 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.238 0.762 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.055 0.945 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.252 12.035 8.125 22.550 hybrid contribution -0.522 -1.324 -0.657 1.568 sum -17.774 10.711 7.469 22.055 Atomic orbital electron populations 1.23392 0.76186 1.05634 1.02617 1.86120 1.23693 1.26158 1.89256 1.18773 0.91464 0.85652 1.00958 1.21579 1.01865 0.90356 1.00793 1.21354 0.91545 1.00223 1.05833 1.19137 0.91600 0.84993 0.95497 1.86362 1.36455 1.12510 1.87360 1.23439 0.96097 0.86020 1.02691 1.19137 0.92265 0.92182 1.12392 1.18295 0.87097 0.84058 0.76324 1.90737 1.73620 1.28359 1.51467 1.45905 1.07273 1.08507 1.73562 1.22540 0.78619 0.98984 0.96441 0.89495 1.23384 0.99126 0.98805 0.95834 1.23791 0.89303 0.86822 0.96724 0.86644 1.23108 0.97940 0.99719 0.96247 1.22808 0.95293 1.01143 0.96474 1.23360 0.95533 0.88617 0.90605 0.88294 1.46738 1.63434 1.13007 1.10068 1.19348 1.27589 0.89959 0.97406 0.89819 1.25408 1.02356 1.01875 0.96219 1.69718 1.48082 1.37953 1.04000 0.85147 0.77053 0.80190 0.77365 1.21834 1.22665 1.19564 1.20436 0.93094 0.96327 1.01331 0.86866 0.90897 0.91326 0.80966 0.80945 0.87339 0.91061 0.90720 0.76174 0.91491 0.94993 0.91174 0.94109 0.90063 0.92022 0.94544 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.83 10.49 -93.37 -0.98 -8.81 16 3 C 0.08 1.87 6.68 22.44 0.15 2.02 16 4 C -0.13 -2.27 9.02 22.40 0.20 -2.07 16 5 C -0.17 -3.26 9.02 22.33 0.20 -3.06 16 6 C 0.14 3.82 6.70 22.82 0.15 3.97 16 7 O -0.31 -9.22 8.56 -69.61 -0.60 -9.82 16 8 C 0.01 0.19 9.81 113.37 1.11 1.30 16 9 C -0.16 -5.12 5.88 -20.02 -0.12 -5.24 16 10 C 0.55 21.53 7.76 86.70 0.67 22.21 16 11 O -0.56 -24.79 14.80 16.96 0.25 -24.54 16 12 N -0.70 -26.87 5.04 -437.03 -2.20 -29.07 16 13 C 0.14 5.52 2.84 46.83 0.13 5.65 16 14 H 0.09 3.34 7.26 -2.38 -0.02 3.32 16 15 C -0.13 -5.70 6.28 32.43 0.20 -5.49 16 16 C 0.14 6.67 4.72 46.60 0.22 6.89 16 17 H 0.12 6.45 5.52 -2.38 -0.01 6.44 16 18 C -0.13 -5.22 6.50 32.57 0.21 -5.01 16 19 C -0.12 -4.17 6.46 32.21 0.21 -3.96 16 20 C 0.13 4.97 5.01 46.23 0.23 5.20 16 21 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 22 N -0.61 -29.77 2.97 -613.33 -1.82 -31.59 16 23 C -0.21 -11.45 10.59 84.03 0.89 -10.56 16 24 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 25 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 26 N -0.95 -55.74 10.47 21.65 0.23 -55.52 16 27 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 28 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 29 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 30 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 31 C -0.09 -2.75 9.47 22.63 0.21 -2.53 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 0.60 7.65 -2.39 -0.02 0.59 16 34 H 0.07 0.63 7.66 -2.38 -0.02 0.62 16 35 H 0.17 1.65 6.27 -2.91 -0.02 1.64 16 36 H 0.17 1.92 6.29 -2.91 -0.02 1.90 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 39 H 0.07 0.86 7.67 -2.38 -0.02 0.84 16 40 H 0.40 15.11 6.69 -92.71 -0.62 14.49 16 41 H 0.07 2.68 7.88 -2.39 -0.02 2.66 16 42 H 0.03 1.53 8.00 -2.39 -0.02 1.51 16 43 H 0.07 2.45 7.88 -2.39 -0.02 2.43 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 2.43 7.85 -2.38 -0.02 2.41 16 46 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.24 14.19 8.31 -92.70 -0.77 13.42 16 48 H 0.13 4.10 6.40 -2.91 -0.02 4.08 16 Total: -1.00 -74.25 382.77 3.54 -70.71 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.38 Total: 33.79 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.26 Total: 7.42 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -3.80 Total: -116.18 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.32 Total: -43.16 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.25 3.54 -70.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098361284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.315 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds