Wall clock time and date at job start Wed Apr 1 2020 04:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99937 * 2 1 4 4 C 1.53004 * 109.46917 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47165 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47158 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47158 * 179.97438 * 6 5 4 8 8 C 1.46846 * 111.00090 * 66.04256 * 7 6 5 9 9 C 1.53038 * 109.52264 * 174.16151 * 8 7 6 10 10 C 1.53117 * 109.27797 * 59.18348 * 9 8 7 11 11 H 1.09000 * 109.52474 * 62.31357 * 10 9 8 12 12 N 1.46496 * 109.52055 * 182.43819 * 10 9 8 13 13 C 1.34777 * 120.00271 * 274.86886 * 12 10 9 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 10 16 16 S 1.81002 * 109.47178 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00092 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99810 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00234 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99664 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47231 * 60.00264 * 21 19 17 23 23 H 1.48505 * 109.47271 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47260 * 299.99689 * 21 19 17 25 25 C 1.53116 * 109.21158 * 302.37622 * 10 9 8 26 26 H 1.09000 * 109.50256 * 297.67752 * 25 10 9 27 27 O 1.42898 * 109.50247 * 177.56516 * 25 10 9 28 28 C 1.46851 * 110.99943 * 301.83715 * 7 6 5 29 29 H 1.09003 * 109.47381 * 59.99825 * 1 2 3 30 30 H 1.09004 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47277 * 300.00176 * 1 2 3 32 32 H 1.08996 * 109.47261 * 60.00368 * 3 2 1 33 33 H 1.08994 * 109.46793 * 299.99566 * 3 2 1 34 34 H 1.09007 * 109.47302 * 59.99726 * 4 3 2 35 35 H 1.08996 * 109.46944 * 299.99923 * 4 3 2 36 36 H 1.08993 * 109.47111 * 59.99473 * 5 4 3 37 37 H 1.09008 * 109.46950 * 300.00096 * 5 4 3 38 38 H 1.08999 * 109.47433 * 60.00165 * 6 5 4 39 39 H 1.08998 * 109.47458 * 299.99441 * 6 5 4 40 40 H 1.09005 * 109.46239 * 54.14701 * 8 7 6 41 41 H 1.09000 * 109.45458 * 294.17571 * 8 7 6 42 42 H 1.08998 * 109.50558 * 299.23567 * 9 8 7 43 43 H 1.09004 * 109.49694 * 179.12216 * 9 8 7 44 44 H 0.97005 * 120.00266 * 94.87469 * 12 10 9 45 45 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 46 46 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 47 47 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 48 48 H 0.96705 * 113.99638 * 179.97438 * 27 25 10 49 49 H 1.09001 * 109.46227 * 305.85234 * 28 7 6 50 50 H 1.08999 * 109.46341 * 65.83312 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6830 2.4615 -0.0026 7 7 6.2805 3.8035 -0.0038 8 6 5.9872 4.5113 1.2489 9 6 6.7428 5.8419 1.2735 10 6 6.3123 6.6900 0.0734 11 1 5.2480 6.9131 0.1481 12 7 7.0749 7.9407 0.0592 13 6 6.6546 8.9946 0.7865 14 8 5.6452 8.9074 1.4532 15 6 7.4388 10.2815 0.7714 16 16 6.6259 11.4960 1.8393 17 6 7.7212 12.8615 1.6388 18 1 8.5858 12.7706 0.9979 19 6 7.4724 14.0541 2.3036 20 7 6.4179 14.1653 3.0835 21 14 8.6333 15.5020 2.0905 22 1 8.6799 15.8925 0.6585 23 1 8.1492 16.6482 2.9011 24 1 9.9941 15.1162 2.5429 25 6 6.5826 5.9111 -1.2168 26 1 7.6521 5.7230 -1.3111 27 8 6.1309 6.6735 -2.3378 28 6 5.8329 4.5778 -1.1685 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8567 0.6438 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 3.8365 3.1235 0.8886 37 1 3.8357 3.1230 -0.8913 38 1 6.0039 1.9205 -0.8928 39 1 6.0054 1.9207 0.8872 40 1 6.3019 3.8993 2.0942 41 1 4.9159 4.7007 1.3166 42 1 7.8149 5.6527 1.2196 43 1 6.5125 6.3741 2.1965 44 1 7.8824 8.0105 -0.4738 45 1 7.4855 10.6665 -0.2473 46 1 8.4489 10.0957 1.1364 47 1 6.2443 14.9988 3.5484 48 1 6.2713 6.2398 -3.1907 49 1 6.0356 4.0140 -2.0791 50 1 4.7624 4.7670 -1.0892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099686669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:09 Heat of formation + Delta-G solvation = -140.825214 kcal Electronic energy + Delta-G solvation = -27937.557050 eV Core-core repulsion = 23897.640398 eV Total energy + Delta-G solvation = -4039.916652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.32924 -38.82319 -38.34442 -36.95884 -35.10876 -33.90588 -32.40117 -31.62783 -30.06118 -29.23783 -27.98007 -26.41702 -25.46036 -24.48821 -23.41546 -22.35669 -21.75371 -20.30800 -19.80739 -17.81925 -17.62312 -16.84882 -16.75364 -16.66098 -16.27173 -15.80017 -15.70897 -15.16124 -14.88854 -14.88194 -14.77755 -14.40323 -14.24128 -13.89971 -13.40516 -13.35537 -13.15641 -12.93554 -12.83043 -12.56347 -12.45681 -12.16841 -12.04439 -11.89395 -11.65887 -11.60090 -11.47405 -11.29791 -11.01693 -11.01507 -10.93852 -10.77137 -10.61875 -10.32592 -10.13855 -9.78938 -9.32208 -9.03514 -8.83002 -8.67393 -8.20276 -6.46331 -6.18728 -3.88890 3.05865 3.15991 3.22526 3.25597 3.29407 3.33274 3.43066 3.73298 3.95461 4.23522 4.35430 4.41234 4.46458 4.63909 4.70755 4.75428 4.79912 4.84145 4.89112 4.93186 4.96876 5.00417 5.09600 5.15178 5.16311 5.19594 5.25642 5.26268 5.34590 5.39511 5.42864 5.54141 5.55274 5.63269 5.69976 5.74692 5.81870 5.94783 5.94918 6.13400 6.19862 6.61280 6.64508 6.67982 6.70946 7.37340 7.62106 7.78926 8.37940 8.68464 9.26448 10.88650 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.001698 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.213316 B =16485.123890 C =17149.416477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.113 4.113 5 C -0.160 4.160 6 C 0.058 3.942 7 N -0.532 5.532 8 C 0.053 3.947 9 C -0.127 4.127 10 C 0.157 3.843 11 H 0.089 0.911 12 N -0.727 5.727 13 C 0.535 3.465 14 O -0.520 6.520 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.101 3.899 26 H 0.069 0.931 27 O -0.556 6.556 28 C 0.025 3.975 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.377 0.623 49 H 0.080 0.920 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -29.093 -10.214 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C -0.018 4.018 4 C -0.151 4.151 5 C -0.199 4.199 6 C -0.070 4.070 7 N -0.256 5.256 8 C -0.075 4.075 9 C -0.166 4.166 10 C 0.051 3.949 11 H 0.108 0.892 12 N -0.379 5.379 13 C 0.321 3.679 14 O -0.395 6.395 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C 0.041 3.959 26 H 0.087 0.913 27 O -0.360 6.360 28 C -0.104 4.104 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.224 0.776 49 H 0.098 0.902 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.537 -28.871 -8.540 30.447 hybrid contribution 1.260 0.972 -1.584 2.245 sum -3.277 -27.898 -10.124 29.859 Atomic orbital electron populations 1.22750 0.80875 1.02807 1.00118 1.87858 1.19871 1.28202 1.95458 1.22592 0.94285 0.84582 1.00303 1.21419 0.92898 0.97305 1.03461 1.22238 0.97712 0.97043 1.02896 1.22207 0.91108 0.90377 1.03298 1.62159 1.58390 1.02784 1.02299 1.22156 0.98627 0.94921 0.91825 1.21999 1.01243 0.94364 0.98978 1.20852 0.98089 0.83781 0.92191 0.89246 1.45888 1.29551 1.12238 1.50261 1.20282 0.85077 0.84205 0.78319 1.90684 1.25003 1.82974 1.40832 1.23527 1.03234 0.97260 1.06312 1.85365 1.35540 1.05087 1.57360 1.22839 1.12873 0.98903 1.33786 0.90995 1.24981 0.95810 0.98230 0.94517 1.70011 1.25906 1.26797 1.27636 0.86231 0.80376 0.80562 0.78365 1.19947 1.20827 1.19951 1.22040 0.97748 0.89489 0.86627 0.91330 1.86665 1.85903 1.46957 1.16447 1.22796 0.98680 0.94451 0.94477 0.94030 0.89571 0.93976 0.93246 0.93359 0.91019 0.90931 0.91302 0.91407 0.90400 0.90180 0.89975 0.93985 0.90607 0.89686 0.76797 0.89230 0.89282 0.92169 0.77637 0.90210 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.39 10.70 -35.23 -0.38 -3.77 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.11 -0.69 5.58 -26.73 -0.15 -0.84 16 5 C -0.16 -0.97 4.52 -26.73 -0.12 -1.09 16 6 C 0.06 0.35 5.36 -3.83 -0.02 0.33 16 7 N -0.53 -4.11 4.86 -234.67 -1.14 -5.25 16 8 C 0.05 0.47 5.05 -3.83 -0.02 0.45 16 9 C -0.13 -1.40 5.67 -26.65 -0.15 -1.55 16 10 C 0.16 1.95 2.20 -67.81 -0.15 1.81 16 11 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 12 N -0.73 -10.35 4.99 -53.69 -0.27 -10.62 16 13 C 0.53 10.32 7.82 -10.98 -0.09 10.23 16 14 O -0.52 -12.02 15.53 5.56 0.09 -11.94 16 15 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 21 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.10 0.94 3.14 -26.65 -0.08 0.85 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 O -0.56 -5.49 13.23 -35.23 -0.47 -5.95 16 28 C 0.02 0.19 4.46 -3.83 -0.02 0.17 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.48 6.68 -51.93 -0.35 0.13 16 37 H 0.07 0.43 6.50 -51.92 -0.34 0.10 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 40 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 41 H 0.04 0.40 6.76 -51.93 -0.35 0.05 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.40 4.67 8.60 -40.82 -0.35 4.32 16 45 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 48 H 0.38 1.93 9.09 45.56 0.41 2.35 16 49 H 0.08 0.48 8.12 -51.93 -0.42 0.05 16 50 H 0.05 0.42 6.61 -51.93 -0.34 0.08 16 LS Contribution 413.90 15.07 6.24 6.24 Total: -1.00 -36.12 413.90 -9.48 -45.61 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.01 Total: 2.46 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 0.96 Total: -3.80 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: -0.67 Total: -41.56 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.76 Total: -21.66 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.12 -9.48 -45.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099686669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.219 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds