Wall clock time and date at job start Wed Apr 1 2020 04:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99937 * 2 1 4 4 C 1.53004 * 109.46917 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47165 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47158 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47158 * 179.97438 * 6 5 4 8 8 C 1.46846 * 111.00090 * 66.04256 * 7 6 5 9 9 C 1.53038 * 109.52264 * 174.16151 * 8 7 6 10 10 C 1.53117 * 109.27797 * 59.18348 * 9 8 7 11 11 H 1.09000 * 109.52474 * 62.31357 * 10 9 8 12 12 N 1.46496 * 109.52055 * 182.43819 * 10 9 8 13 13 C 1.34777 * 120.00271 * 274.86886 * 12 10 9 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 10 16 16 S 1.81002 * 109.47178 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00092 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99810 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00234 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99664 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47231 * 60.00264 * 21 19 17 23 23 H 1.48505 * 109.47271 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47260 * 299.99689 * 21 19 17 25 25 C 1.53116 * 109.21158 * 302.37622 * 10 9 8 26 26 H 1.09000 * 109.50256 * 297.67752 * 25 10 9 27 27 O 1.42898 * 109.50247 * 177.56516 * 25 10 9 28 28 C 1.46851 * 110.99943 * 301.83715 * 7 6 5 29 29 H 1.09003 * 109.47381 * 59.99825 * 1 2 3 30 30 H 1.09004 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47277 * 300.00176 * 1 2 3 32 32 H 1.08996 * 109.47261 * 60.00368 * 3 2 1 33 33 H 1.08994 * 109.46793 * 299.99566 * 3 2 1 34 34 H 1.09007 * 109.47302 * 59.99726 * 4 3 2 35 35 H 1.08996 * 109.46944 * 299.99923 * 4 3 2 36 36 H 1.08993 * 109.47111 * 59.99473 * 5 4 3 37 37 H 1.09008 * 109.46950 * 300.00096 * 5 4 3 38 38 H 1.08999 * 109.47433 * 60.00165 * 6 5 4 39 39 H 1.08998 * 109.47458 * 299.99441 * 6 5 4 40 40 H 1.09005 * 109.46239 * 54.14701 * 8 7 6 41 41 H 1.09000 * 109.45458 * 294.17571 * 8 7 6 42 42 H 1.08998 * 109.50558 * 299.23567 * 9 8 7 43 43 H 1.09004 * 109.49694 * 179.12216 * 9 8 7 44 44 H 0.97005 * 120.00266 * 94.87469 * 12 10 9 45 45 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 46 46 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 47 47 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 48 48 H 0.96705 * 113.99638 * 179.97438 * 27 25 10 49 49 H 1.09001 * 109.46227 * 305.85234 * 28 7 6 50 50 H 1.08999 * 109.46341 * 65.83312 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6830 2.4615 -0.0026 7 7 6.2805 3.8035 -0.0038 8 6 5.9872 4.5113 1.2489 9 6 6.7428 5.8419 1.2735 10 6 6.3123 6.6900 0.0734 11 1 5.2480 6.9131 0.1481 12 7 7.0749 7.9407 0.0592 13 6 6.6546 8.9946 0.7865 14 8 5.6452 8.9074 1.4532 15 6 7.4388 10.2815 0.7714 16 16 6.6259 11.4960 1.8393 17 6 7.7212 12.8615 1.6388 18 1 8.5858 12.7706 0.9979 19 6 7.4724 14.0541 2.3036 20 7 6.4179 14.1653 3.0835 21 14 8.6333 15.5020 2.0905 22 1 8.6799 15.8925 0.6585 23 1 8.1492 16.6482 2.9011 24 1 9.9941 15.1162 2.5429 25 6 6.5826 5.9111 -1.2168 26 1 7.6521 5.7230 -1.3111 27 8 6.1309 6.6735 -2.3378 28 6 5.8329 4.5778 -1.1685 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8567 0.6438 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 3.8365 3.1235 0.8886 37 1 3.8357 3.1230 -0.8913 38 1 6.0039 1.9205 -0.8928 39 1 6.0054 1.9207 0.8872 40 1 6.3019 3.8993 2.0942 41 1 4.9159 4.7007 1.3166 42 1 7.8149 5.6527 1.2196 43 1 6.5125 6.3741 2.1965 44 1 7.8824 8.0105 -0.4738 45 1 7.4855 10.6665 -0.2473 46 1 8.4489 10.0957 1.1364 47 1 6.2443 14.9988 3.5484 48 1 6.2713 6.2398 -3.1907 49 1 6.0356 4.0140 -2.0791 50 1 4.7624 4.7670 -1.0892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099686669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:08 Heat of formation + Delta-G solvation = -170.725123 kcal Electronic energy + Delta-G solvation = -27938.853607 eV Core-core repulsion = 23897.640398 eV Total energy + Delta-G solvation = -4041.213209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.30107 -39.98956 -38.97506 -37.69034 -36.06609 -34.77714 -34.58249 -32.66246 -30.90200 -30.43284 -28.74958 -27.67128 -26.97366 -25.24096 -24.18082 -22.99099 -22.41258 -21.70412 -20.66068 -19.76945 -18.37019 -17.84281 -17.77962 -17.32323 -17.26689 -16.87832 -16.52372 -16.49265 -16.29530 -15.94825 -15.72481 -15.45833 -15.21344 -14.95772 -14.72590 -14.46115 -14.12430 -13.98140 -13.81641 -13.49124 -13.39978 -13.17088 -13.10971 -12.86440 -12.78095 -12.61712 -12.50033 -12.39465 -12.22282 -12.13970 -11.98757 -11.77388 -11.51765 -11.44416 -11.12830 -11.09114 -10.83114 -10.68285 -10.28639 -10.11478 -9.31342 -8.67021 -8.34359 -6.12848 1.26453 1.44252 1.46487 1.56559 1.61295 2.24173 2.28707 2.69514 2.83556 2.99610 3.20634 3.32472 3.67028 3.84787 3.87763 3.95351 3.98705 4.01263 4.11639 4.23514 4.26130 4.27439 4.29884 4.34828 4.43815 4.47678 4.48434 4.50261 4.56138 4.62508 4.67941 4.75490 4.78898 4.83204 4.87701 4.90363 5.01045 5.05302 5.18074 5.22830 5.33748 5.41396 5.47678 5.98715 6.03944 6.16951 6.19625 6.50123 6.89028 7.06558 7.24635 8.74684 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.001698 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.213316 B =16485.123890 C =17149.416477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.055 3.945 4 C -0.106 4.106 5 C -0.152 4.152 6 C 0.060 3.940 7 N -0.530 5.530 8 C 0.058 3.942 9 C -0.120 4.120 10 C 0.151 3.849 11 H 0.054 0.946 12 N -0.703 5.703 13 C 0.535 3.465 14 O -0.567 6.567 15 C -0.129 4.129 16 S -0.150 6.150 17 C -0.549 4.549 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.111 3.889 26 H 0.088 0.912 27 O -0.577 6.577 28 C 0.029 3.971 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.031 0.969 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.415 0.585 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.271 0.729 48 H 0.399 0.601 49 H 0.107 0.893 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 -30.423 -12.198 32.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.021 4.021 4 C -0.144 4.144 5 C -0.191 4.191 6 C -0.068 4.068 7 N -0.254 5.254 8 C -0.070 4.070 9 C -0.159 4.159 10 C 0.046 3.954 11 H 0.073 0.927 12 N -0.355 5.355 13 C 0.321 3.679 14 O -0.445 6.445 15 C -0.280 4.280 16 S 0.077 5.923 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.186 1.186 25 C 0.051 3.949 26 H 0.106 0.894 27 O -0.385 6.385 28 C -0.100 4.100 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.049 0.951 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.251 0.749 45 H 0.124 0.876 46 H 0.129 0.871 47 H 0.080 0.920 48 H 0.249 0.751 49 H 0.125 0.875 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.364 -30.257 -10.579 32.140 hybrid contribution 0.550 1.258 -1.035 1.719 sum -1.814 -28.999 -11.614 31.291 Atomic orbital electron populations 1.22914 0.79735 1.03836 1.00658 1.87820 1.21296 1.28989 1.95578 1.22675 0.94914 0.84206 1.00354 1.21360 0.92250 0.97215 1.03603 1.22147 0.97910 0.96810 1.02221 1.22266 0.90708 0.89418 1.04369 1.62183 1.58442 1.03250 1.01552 1.22066 0.97629 0.94093 0.93226 1.21888 1.02209 0.94923 0.96883 1.21045 0.95890 0.83249 0.95196 0.92727 1.45675 1.29729 1.11601 1.48498 1.20064 0.84384 0.84808 0.78610 1.90673 1.26993 1.83733 1.43146 1.23365 1.03409 0.95930 1.05270 1.85553 1.38214 1.08212 1.60318 1.23183 1.13059 0.99258 1.34138 0.89933 1.26133 0.97598 1.01552 0.93793 1.70181 1.28076 1.27774 1.28747 0.84997 0.77992 0.76116 0.78834 1.18692 1.20328 1.18576 1.21922 0.98938 0.89208 0.84796 0.89444 1.86611 1.86180 1.47960 1.17775 1.22791 0.97698 0.93921 0.95556 0.93337 0.88390 0.93593 0.93497 0.93035 0.90533 0.91049 0.92502 0.91607 0.88872 0.89601 0.88753 0.95084 0.89312 0.92620 0.74866 0.87573 0.87115 0.91984 0.75081 0.87458 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -6.91 10.70 -148.98 -1.59 -8.50 16 3 C 0.05 0.74 5.94 71.98 0.43 1.17 16 4 C -0.11 -1.16 5.58 30.60 0.17 -0.99 16 5 C -0.15 -1.64 4.52 30.59 0.14 -1.51 16 6 C 0.06 0.58 5.36 86.30 0.46 1.04 16 7 N -0.53 -6.97 4.86 -896.35 -4.36 -11.32 16 8 C 0.06 0.99 5.05 86.33 0.44 1.42 16 9 C -0.12 -2.61 5.67 30.65 0.17 -2.44 16 10 C 0.15 3.72 2.20 45.07 0.10 3.82 16 11 H 0.05 1.75 7.58 -2.39 -0.02 1.74 16 12 N -0.70 -19.43 4.99 -442.17 -2.21 -21.64 16 13 C 0.54 20.88 7.82 87.66 0.69 21.56 16 14 O -0.57 -27.39 15.53 -3.02 -0.05 -27.43 16 15 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 16 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 17 C -0.55 -31.87 9.50 67.95 0.65 -31.23 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 21 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 C 0.11 1.81 3.14 30.65 0.10 1.91 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 O -0.58 -10.13 13.23 -148.98 -1.97 -12.10 16 28 C 0.03 0.38 4.46 86.33 0.38 0.76 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.76 6.68 -2.39 -0.02 0.75 16 37 H 0.07 0.75 6.50 -2.38 -0.02 0.74 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 0.78 8.06 -2.39 -0.02 0.76 16 40 H 0.09 1.38 8.06 -2.38 -0.02 1.36 16 41 H 0.03 0.60 6.76 -2.39 -0.02 0.58 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.41 8.78 8.60 -92.70 -0.80 7.98 16 45 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 46 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 47 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 48 H 0.40 2.90 9.09 -74.05 -0.67 2.23 16 49 H 0.11 0.86 8.12 -2.39 -0.02 0.84 16 50 H 0.04 0.59 6.61 -2.39 -0.02 0.57 16 Total: -1.00 -81.24 413.90 -3.69 -84.93 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.54 Total: 22.69 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.87 Total: -6.56 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -6.28 Total: -89.34 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -3.61 Total: -48.04 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -81.24 -3.69 -84.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099686669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.799 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds